data_4XSO # _model_server_result.job_id mN_yzXrNSILTQynX-XQl7Q _model_server_result.datetime_utc '2024-11-07 01:33:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xso # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4XSO # _exptl.entry_id 4XSO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XSO _cell.length_a 78.289 _cell.length_b 133.469 _cell.length_c 142.812 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XSO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4XSO _atom_sites.fract_transf_matrix[1][1] 0.012773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007492 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 401 1 GOL GOL . D 2 GOL B 1 402 5 GOL GOL . E 2 GOL A 1 401 2 GOL GOL . F 2 GOL A 1 402 3 GOL GOL . G 3 HOH B 1 501 8 HOH HOH . G 3 HOH B 2 502 22 HOH HOH . G 3 HOH B 3 503 50 HOH HOH . G 3 HOH B 4 504 19 HOH HOH . G 3 HOH B 5 505 15 HOH HOH . G 3 HOH B 6 506 9 HOH HOH . G 3 HOH B 7 507 25 HOH HOH . G 3 HOH B 8 508 36 HOH HOH . G 3 HOH B 9 509 74 HOH HOH . G 3 HOH B 10 510 87 HOH HOH . G 3 HOH B 11 511 88 HOH HOH . G 3 HOH B 12 512 17 HOH HOH . G 3 HOH B 13 513 94 HOH HOH . G 3 HOH B 14 514 75 HOH HOH . G 3 HOH B 15 515 92 HOH HOH . G 3 HOH B 16 516 90 HOH HOH . G 3 HOH B 17 517 13 HOH HOH . G 3 HOH B 18 518 14 HOH HOH . G 3 HOH B 19 519 18 HOH HOH . G 3 HOH B 20 520 19 HOH HOH . G 3 HOH B 21 521 23 HOH HOH . G 3 HOH B 22 522 28 HOH HOH . G 3 HOH B 23 523 29 HOH HOH . G 3 HOH B 24 524 30 HOH HOH . G 3 HOH B 25 525 31 HOH HOH . G 3 HOH B 26 526 33 HOH HOH . G 3 HOH B 27 527 34 HOH HOH . G 3 HOH B 28 528 35 HOH HOH . G 3 HOH B 29 529 37 HOH HOH . G 3 HOH B 30 530 38 HOH HOH . G 3 HOH B 31 531 39 HOH HOH . G 3 HOH B 32 532 49 HOH HOH . G 3 HOH B 33 533 52 HOH HOH . G 3 HOH B 34 534 56 HOH HOH . G 3 HOH B 35 535 57 HOH HOH . G 3 HOH B 36 536 58 HOH HOH . G 3 HOH B 37 537 59 HOH HOH . G 3 HOH B 38 538 60 HOH HOH . G 3 HOH B 39 539 61 HOH HOH . G 3 HOH B 40 540 62 HOH HOH . G 3 HOH B 41 541 63 HOH HOH . G 3 HOH B 42 542 64 HOH HOH . G 3 HOH B 43 543 65 HOH HOH . G 3 HOH B 44 544 66 HOH HOH . G 3 HOH B 45 545 67 HOH HOH . G 3 HOH B 46 546 68 HOH HOH . G 3 HOH B 47 547 70 HOH HOH . G 3 HOH B 48 548 71 HOH HOH . G 3 HOH B 49 549 72 HOH HOH . G 3 HOH B 50 550 73 HOH HOH . G 3 HOH B 51 551 76 HOH HOH . G 3 HOH B 52 552 77 HOH HOH . G 3 HOH B 53 553 80 HOH HOH . G 3 HOH B 54 554 84 HOH HOH . G 3 HOH B 55 555 85 HOH HOH . G 3 HOH B 56 556 86 HOH HOH . G 3 HOH B 57 557 89 HOH HOH . G 3 HOH B 58 558 91 HOH HOH . G 3 HOH B 59 559 105 HOH HOH . G 3 HOH B 60 560 1 HOH HOH . G 3 HOH B 61 561 3 HOH HOH . G 3 HOH B 62 562 4 HOH HOH . G 3 HOH B 63 563 5 HOH HOH . G 3 HOH B 64 564 6 HOH HOH . G 3 HOH B 65 565 7 HOH HOH . G 3 HOH B 66 566 8 HOH HOH . G 3 HOH B 67 567 18 HOH HOH . G 3 HOH B 68 568 21 HOH HOH . G 3 HOH B 69 569 27 HOH HOH . G 3 HOH B 70 570 30 HOH HOH . G 3 HOH B 71 571 31 HOH HOH . H 3 HOH A 1 501 144 HOH HOH . H 3 HOH A 2 502 147 HOH HOH . H 3 HOH A 3 503 162 HOH HOH . H 3 HOH A 4 504 82 HOH HOH . H 3 HOH A 5 505 97 HOH HOH . H 3 HOH A 6 506 16 HOH HOH . H 3 HOH A 7 507 93 HOH HOH . H 3 HOH A 8 508 131 HOH HOH . H 3 HOH A 9 509 26 HOH HOH . H 3 HOH A 10 510 81 HOH HOH . H 3 HOH A 11 511 98 HOH HOH . H 3 HOH A 12 512 28 HOH HOH . H 3 HOH A 13 513 160 HOH HOH . H 3 HOH A 14 514 51 HOH HOH . H 3 HOH A 15 515 17 HOH HOH . H 3 HOH A 16 516 21 HOH HOH . H 3 HOH A 17 517 6 HOH HOH . H 3 HOH A 18 518 129 HOH HOH . H 3 HOH A 19 519 132 HOH HOH . H 3 HOH A 20 520 117 HOH HOH . H 3 HOH A 21 521 158 HOH HOH . H 3 HOH A 22 522 130 HOH HOH . H 3 HOH A 23 523 43 HOH HOH . H 3 HOH A 24 524 11 HOH HOH . H 3 HOH A 25 525 12 HOH HOH . H 3 HOH A 26 526 20 HOH HOH . H 3 HOH A 27 527 22 HOH HOH . H 3 HOH A 28 528 24 HOH HOH . H 3 HOH A 29 529 25 HOH HOH . H 3 HOH A 30 530 40 HOH HOH . H 3 HOH A 31 531 42 HOH HOH . H 3 HOH A 32 532 44 HOH HOH . H 3 HOH A 33 533 45 HOH HOH . H 3 HOH A 34 534 46 HOH HOH . H 3 HOH A 35 535 47 HOH HOH . H 3 HOH A 36 536 48 HOH HOH . H 3 HOH A 37 537 95 HOH HOH . H 3 HOH A 38 538 100 HOH HOH . H 3 HOH A 39 539 102 HOH HOH . H 3 HOH A 40 540 103 HOH HOH . H 3 HOH A 41 541 106 HOH HOH . H 3 HOH A 42 542 108 HOH HOH . H 3 HOH A 43 543 110 HOH HOH . H 3 HOH A 44 544 111 HOH HOH . H 3 HOH A 45 545 112 HOH HOH . H 3 HOH A 46 546 115 HOH HOH . H 3 HOH A 47 547 116 HOH HOH . H 3 HOH A 48 548 119 HOH HOH . H 3 HOH A 49 549 120 HOH HOH . H 3 HOH A 50 550 121 HOH HOH . H 3 HOH A 51 551 123 HOH HOH . H 3 HOH A 52 552 124 HOH HOH . H 3 HOH A 53 553 127 HOH HOH . H 3 HOH A 54 554 134 HOH HOH . H 3 HOH A 55 555 135 HOH HOH . H 3 HOH A 56 556 136 HOH HOH . H 3 HOH A 57 557 137 HOH HOH . H 3 HOH A 58 558 138 HOH HOH . H 3 HOH A 59 559 139 HOH HOH . H 3 HOH A 60 560 141 HOH HOH . H 3 HOH A 61 561 142 HOH HOH . H 3 HOH A 62 562 146 HOH HOH . H 3 HOH A 63 563 148 HOH HOH . H 3 HOH A 64 564 149 HOH HOH . H 3 HOH A 65 565 150 HOH HOH . H 3 HOH A 66 566 151 HOH HOH . H 3 HOH A 67 567 152 HOH HOH . H 3 HOH A 68 568 153 HOH HOH . H 3 HOH A 69 569 154 HOH HOH . H 3 HOH A 70 570 155 HOH HOH . H 3 HOH A 71 571 156 HOH HOH . H 3 HOH A 72 572 15 HOH HOH . H 3 HOH A 73 573 2 HOH HOH . H 3 HOH A 74 574 12 HOH HOH . H 3 HOH A 75 575 23 HOH HOH . H 3 HOH A 76 576 24 HOH HOH . H 3 HOH A 77 577 26 HOH HOH . H 3 HOH A 78 578 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 -21.979 -28.586 35.571 1 62.2 ? C1 GOL 402 B 1 HETATM 2 O O1 GOL . . . D 2 -23.196 -27.83 35.208 1 47.98 ? O1 GOL 402 B 1 HETATM 3 C C2 GOL . . . D 2 -20.609 -27.85 35.477 1 51.95 ? C2 GOL 402 B 1 HETATM 4 O O2 GOL . . . D 2 -20.864 -26.544 35.872 1 31.64 ? O2 GOL 402 B 1 HETATM 5 C C3 GOL . . . D 2 -19.417 -28.416 36.308 1 60.45 ? C3 GOL 402 B 1 HETATM 6 O O3 GOL . . . D 2 -18.559 -27.309 36.729 1 52.25 ? O3 GOL 402 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #