data_4XSV # _model_server_result.job_id QDgfyJC6nfssRPKwZPW5aA _model_server_result.datetime_utc '2024-11-05 03:44:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xsv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4XSV # _exptl.entry_id 4XSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.197 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XSV _cell.length_a 73.39 _cell.length_b 73.39 _cell.length_c 140.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H14 N3 O8 P' _chem_comp.formula_weight 323.197 _chem_comp.id C5P _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P C5P sing 70 n n O3P HOP3 C5P sing 71 n n P O1P C5P doub 72 n n P O2P C5P sing 73 n n P O5' C5P sing 74 n n O2P HOP2 C5P sing 75 n n O5' C5' C5P sing 76 n n C5' C4' C5P sing 77 n n C5' "H5'1" C5P sing 78 n n C5' "H5'2" C5P sing 79 n n C4' O4' C5P sing 80 n n C4' C3' C5P sing 81 n n C4' H4' C5P sing 82 n n O4' C1' C5P sing 83 n n C3' O3' C5P sing 84 n n C3' C2' C5P sing 85 n n C3' H3' C5P sing 86 n n O3' HO3' C5P sing 87 n n C2' O2' C5P sing 88 n n C2' C1' C5P sing 89 n n C2' "H2'1" C5P sing 90 n n O2' HO2' C5P sing 91 n n C1' N1 C5P sing 92 n n C1' H1' C5P sing 93 n n N1 C2 C5P sing 94 n n N1 C6 C5P sing 95 n n C2 N3 C5P sing 96 n n C2 O2 C5P doub 97 n n N3 C4 C5P doub 98 n n C4 C5 C5P sing 99 n n C4 N4 C5P sing 100 n n C5 C6 C5P doub 101 n n C5 H5 C5P sing 102 n n C6 H6 C5P sing 103 n n N4 HN41 C5P sing 104 n n N4 HN42 C5P sing 105 n n # _atom_sites.entry_id 4XSV _atom_sites.fract_transf_matrix[1][1] 0.013626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C5P A 1 401 400 C5P C5P . C 3 CTP A 1 402 401 CTP CTP . D 4 GOL A 1 403 500 GOL GOL . E 5 HOH A 1 501 21 HOH HOH . E 5 HOH A 2 502 1 HOH HOH . E 5 HOH A 3 503 19 HOH HOH . E 5 HOH A 4 504 3 HOH HOH . E 5 HOH A 5 505 18 HOH HOH . E 5 HOH A 6 506 12 HOH HOH . E 5 HOH A 7 507 2 HOH HOH . E 5 HOH A 8 508 4 HOH HOH . E 5 HOH A 9 509 5 HOH HOH . E 5 HOH A 10 510 6 HOH HOH . E 5 HOH A 11 511 7 HOH HOH . E 5 HOH A 12 512 8 HOH HOH . E 5 HOH A 13 513 9 HOH HOH . E 5 HOH A 14 514 10 HOH HOH . E 5 HOH A 15 515 11 HOH HOH . E 5 HOH A 16 516 13 HOH HOH . E 5 HOH A 17 517 14 HOH HOH . E 5 HOH A 18 518 15 HOH HOH . E 5 HOH A 19 519 16 HOH HOH . E 5 HOH A 20 520 17 HOH HOH . E 5 HOH A 21 521 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P C5P . . . B 2 -18.949 -3.631 -12.97 1 21.63 ? O3P C5P 401 A 1 HETATM 2 P P C5P . . . B 2 -20.228 -2.82 -12.873 1 21.43 ? P C5P 401 A 1 HETATM 3 O O1P C5P . . . B 2 -19.959 -1.381 -13.279 1 22.55 ? O1P C5P 401 A 1 HETATM 4 O O2P C5P . . . B 2 -20.999 -2.977 -11.607 1 19.87 ? O2P C5P 401 A 1 HETATM 5 O O5' C5P . . . B 2 -21.235 -3.373 -13.969 1 21.76 ? O5' C5P 401 A 1 HETATM 6 C C5' C5P . . . B 2 -21.488 -4.785 -14.096 1 22.37 ? C5' C5P 401 A 1 HETATM 7 C C4' C5P . . . B 2 -22.167 -5.101 -15.43 1 21.51 ? C4' C5P 401 A 1 HETATM 8 O O4' C5P . . . B 2 -23.492 -4.515 -15.466 1 22.72 ? O4' C5P 401 A 1 HETATM 9 C C3' C5P . . . B 2 -21.37 -4.503 -16.573 1 21.92 ? C3' C5P 401 A 1 HETATM 10 O O3' C5P . . . B 2 -21.445 -5.33 -17.717 1 20.84 ? O3' C5P 401 A 1 HETATM 11 C C2' C5P . . . B 2 -22.11 -3.22 -16.852 1 24.15 ? C2' C5P 401 A 1 HETATM 12 O O2' C5P . . . B 2 -21.883 -2.727 -18.165 1 24.29 ? O2' C5P 401 A 1 HETATM 13 C C1' C5P . . . B 2 -23.573 -3.624 -16.588 1 24.82 ? C1' C5P 401 A 1 HETATM 14 N N1 C5P . . . B 2 -24.393 -2.446 -16.322 1 26.37 ? N1 C5P 401 A 1 HETATM 15 C C2 C5P . . . B 2 -25.375 -1.949 -17.257 1 28.63 ? C2 C5P 401 A 1 HETATM 16 N N3 C5P . . . B 2 -26.093 -0.844 -16.958 1 26.98 ? N3 C5P 401 A 1 HETATM 17 C C4 C5P . . . B 2 -25.87 -0.208 -15.792 1 28.09 ? C4 C5P 401 A 1 HETATM 18 C C5 C5P . . . B 2 -24.913 -0.669 -14.9 1 27.95 ? C5 C5P 401 A 1 HETATM 19 C C6 C5P . . . B 2 -24.167 -1.805 -15.18 1 26.62 ? C6 C5P 401 A 1 HETATM 20 O O2 C5P . . . B 2 -25.65 -2.508 -18.359 1 30.18 ? O2 C5P 401 A 1 HETATM 21 N N4 C5P . . . B 2 -26.592 0.899 -15.477 1 30.04 ? N4 C5P 401 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #