data_4XSV # _model_server_result.job_id P39SZ9idTt218Cj7I3L-Fw _model_server_result.datetime_utc '2024-11-05 03:56:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xsv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4XSV # _exptl.entry_id 4XSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XSV _cell.length_a 73.39 _cell.length_b 73.39 _cell.length_c 140.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 106 n n N1 C6 CTP sing 107 n n N1 C1' CTP sing 108 n n C2 N3 CTP sing 109 n n C2 O2 CTP doub 110 n n N3 C4 CTP doub 111 n n C4 C5 CTP sing 112 n n C4 N4 CTP sing 113 n n C5 C6 CTP doub 114 n n C5 H5 CTP sing 115 n n C6 H6 CTP sing 116 n n N4 HN41 CTP sing 117 n n N4 HN42 CTP sing 118 n n C1' C2' CTP sing 119 n n C1' O4' CTP sing 120 n n C1' H1' CTP sing 121 n n C2' O2' CTP sing 122 n n C2' C3' CTP sing 123 n n C2' H2' CTP sing 124 n n O2' HO2' CTP sing 125 n n C3' C4' CTP sing 126 n n C3' O3' CTP sing 127 n n C3' H3' CTP sing 128 n n C4' O4' CTP sing 129 n n C4' C5' CTP sing 130 n n C4' H4' CTP sing 131 n n O3' HO3' CTP sing 132 n n C5' O5' CTP sing 133 n n C5' "H5'1" CTP sing 134 n n C5' "H5'2" CTP sing 135 n n O5' PA CTP sing 136 n n PA O1A CTP doub 137 n n PA O2A CTP sing 138 n n PA O3A CTP sing 139 n n O2A HOA2 CTP sing 140 n n O3A PB CTP sing 141 n n PB O1B CTP doub 142 n n PB O2B CTP sing 143 n n PB O3B CTP sing 144 n n O2B HOB2 CTP sing 145 n n O3B PG CTP sing 146 n n PG O1G CTP doub 147 n n PG O2G CTP sing 148 n n PG O3G CTP sing 149 n n O2G HOG2 CTP sing 150 n n O3G HOG3 CTP sing 151 n n # _atom_sites.entry_id 4XSV _atom_sites.fract_transf_matrix[1][1] 0.013626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C5P A 1 401 400 C5P C5P . C 3 CTP A 1 402 401 CTP CTP . D 4 GOL A 1 403 500 GOL GOL . E 5 HOH A 1 501 21 HOH HOH . E 5 HOH A 2 502 1 HOH HOH . E 5 HOH A 3 503 19 HOH HOH . E 5 HOH A 4 504 3 HOH HOH . E 5 HOH A 5 505 18 HOH HOH . E 5 HOH A 6 506 12 HOH HOH . E 5 HOH A 7 507 2 HOH HOH . E 5 HOH A 8 508 4 HOH HOH . E 5 HOH A 9 509 5 HOH HOH . E 5 HOH A 10 510 6 HOH HOH . E 5 HOH A 11 511 7 HOH HOH . E 5 HOH A 12 512 8 HOH HOH . E 5 HOH A 13 513 9 HOH HOH . E 5 HOH A 14 514 10 HOH HOH . E 5 HOH A 15 515 11 HOH HOH . E 5 HOH A 16 516 13 HOH HOH . E 5 HOH A 17 517 14 HOH HOH . E 5 HOH A 18 518 15 HOH HOH . E 5 HOH A 19 519 16 HOH HOH . E 5 HOH A 20 520 17 HOH HOH . E 5 HOH A 21 521 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . C 3 -34.289 -5.37 8.031 1 49.24 ? N1 CTP 402 A 1 HETATM 2 C C2 CTP . . . C 3 -33.557 -6.507 8.338 1 44.51 ? C2 CTP 402 A 1 HETATM 3 N N3 CTP . . . C 3 -32.182 -6.435 8.411 1 44.6 ? N3 CTP 402 A 1 HETATM 4 C C4 CTP . . . C 3 -31.506 -5.24 8.189 1 41.76 ? C4 CTP 402 A 1 HETATM 5 C C5 CTP . . . C 3 -32.226 -4.08 7.894 1 39.42 ? C5 CTP 402 A 1 HETATM 6 C C6 CTP . . . C 3 -33.618 -4.14 7.822 1 43.61 ? C6 CTP 402 A 1 HETATM 7 O O2 CTP . . . C 3 -34.097 -7.582 8.548 1 45 ? O2 CTP 402 A 1 HETATM 8 N N4 CTP . . . C 3 -30.174 -5.276 8.276 1 39.75 ? N4 CTP 402 A 1 HETATM 9 C C1' CTP . . . C 3 -35.758 -5.463 8.006 1 60.4 ? C1' CTP 402 A 1 HETATM 10 C C2' CTP . . . C 3 -36.037 -4.292 8.95 1 66.7 ? C2' CTP 402 A 1 HETATM 11 O O2' CTP . . . C 3 -36.1 -4.712 10.321 1 58.61 ? O2' CTP 402 A 1 HETATM 12 C C3' CTP . . . C 3 -37.383 -3.757 8.458 1 75.15 ? C3' CTP 402 A 1 HETATM 13 C C4' CTP . . . C 3 -37.745 -4.72 7.294 1 77.7 ? C4' CTP 402 A 1 HETATM 14 O O4' CTP . . . C 3 -36.427 -5.082 6.795 1 68.08 ? O4' CTP 402 A 1 HETATM 15 O O3' CTP . . . C 3 -38.34 -3.769 9.54 1 84.51 ? O3' CTP 402 A 1 HETATM 16 C C5' CTP . . . C 3 -38.63 -4.088 6.169 1 78.11 ? C5' CTP 402 A 1 HETATM 17 O O5' CTP . . . C 3 -37.834 -3.22 5.331 1 78.77 ? O5' CTP 402 A 1 HETATM 18 P PA CTP . . . C 3 -38.041 -1.57 5.163 1 78.21 ? PA CTP 402 A 1 HETATM 19 O O1A CTP . . . C 3 -38.595 -1.332 3.643 1 70.78 ? O1A CTP 402 A 1 HETATM 20 O O2A CTP . . . C 3 -38.989 -0.926 6.126 1 73.89 ? O2A CTP 402 A 1 HETATM 21 O O3A CTP . . . C 3 -36.477 -0.949 5.167 1 62.02 ? O3A CTP 402 A 1 HETATM 22 P PB CTP . . . C 3 -35.61 -0.671 6.524 1 52.82 ? PB CTP 402 A 1 HETATM 23 O O1B CTP . . . C 3 -35.592 0.969 6.786 1 45.3 ? O1B CTP 402 A 1 HETATM 24 O O2B CTP . . . C 3 -36.099 -1.558 7.623 1 49.82 ? O2B CTP 402 A 1 HETATM 25 O O3B CTP . . . C 3 -34.047 -0.988 6.248 1 54.25 ? O3B CTP 402 A 1 HETATM 26 P PG CTP . . . C 3 -32.821 -0.467 7.224 1 52.06 ? PG CTP 402 A 1 HETATM 27 O O1G CTP . . . C 3 -31.447 -1.162 6.654 1 45.95 ? O1G CTP 402 A 1 HETATM 28 O O2G CTP . . . C 3 -33.007 -0.671 8.691 1 45.73 ? O2G CTP 402 A 1 HETATM 29 O O3G CTP . . . C 3 -32.688 1.097 6.802 1 53.99 ? O3G CTP 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #