data_4XT1 # _model_server_result.job_id p66tnZdmx3SacKWkMmmqUg _model_server_result.datetime_utc '2025-01-03 14:31:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xt1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":408}' # _entry.id 4XT1 # _exptl.entry_id 4XT1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XT1 _cell.length_a 81.024 _cell.length_b 81.024 _cell.length_c 231.303 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XT1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 23 1_555 A SG CYS 271 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 112 A CYS 104 1_555 A SG CYS 181 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 8 B CYS 8 1_555 B SG CYS 34 B CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 12 B CYS 12 1_555 B SG CYS 50 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 26 C CYS 22 1_555 C SG CYS 99 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B C PCA 1 B PCA 1 1_555 B N HIS 2 B HIS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 314 n n C10 C9 OLC doub 315 n n C10 C11 OLC sing 316 n n C9 C8 OLC sing 317 n n C17 C16 OLC sing 318 z n C11 C12 OLC sing 319 n n C8 C7 OLC sing 320 n n C24 C22 OLC sing 321 n n C24 O25 OLC sing 322 n n C16 C15 OLC sing 323 n n C12 C13 OLC sing 324 n n C7 C6 OLC sing 325 n n C15 C14 OLC sing 326 n n C13 C14 OLC sing 327 n n C6 C5 OLC sing 328 n n C5 C4 OLC sing 329 n n C4 C3 OLC sing 330 n n C3 C2 OLC sing 331 n n C2 C1 OLC sing 332 n n C21 C22 OLC sing 333 n n C21 O20 OLC sing 334 n n C1 O19 OLC doub 335 n n C1 O20 OLC sing 336 n n C22 O23 OLC sing 337 n n C18 H18 OLC sing 338 n n C18 H18A OLC sing 339 n n C18 H18B OLC sing 340 n n C10 H10 OLC sing 341 n n C9 H9 OLC sing 342 n n C17 H17 OLC sing 343 n n C17 H17A OLC sing 344 n n C11 H11 OLC sing 345 n n C11 H11A OLC sing 346 n n C8 H8 OLC sing 347 n n C8 H8A OLC sing 348 n n C24 H24 OLC sing 349 n n C24 H24A OLC sing 350 n n C16 H16 OLC sing 351 n n C16 H16A OLC sing 352 n n C12 H12 OLC sing 353 n n C12 H12A OLC sing 354 n n C7 H7 OLC sing 355 n n C7 H7A OLC sing 356 n n C15 H15 OLC sing 357 n n C15 H15A OLC sing 358 n n C13 H13 OLC sing 359 n n C13 H13A OLC sing 360 n n C6 H6 OLC sing 361 n n C6 H6A OLC sing 362 n n C14 H14 OLC sing 363 n n C14 H14A OLC sing 364 n n C5 H5 OLC sing 365 n n C5 H5A OLC sing 366 n n C4 H4 OLC sing 367 n n C4 H4A OLC sing 368 n n C3 H3 OLC sing 369 n n C3 H3A OLC sing 370 n n C2 H2 OLC sing 371 n n C2 H2A OLC sing 372 n n C21 H21 OLC sing 373 n n C21 H21A OLC sing 374 n n C22 H22 OLC sing 375 n n O25 HO25 OLC sing 376 n n O23 HO23 OLC sing 377 n n # _atom_sites.entry_id 4XT1 _atom_sites.fract_transf_matrix[1][1] 0.012342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CLR A 1 401 401 CLR CLR . E 4 CLR A 1 402 402 CLR CLR . F 5 OLC A 1 403 501 OLC OLC . G 5 OLC A 1 404 502 OLC OLC . H 5 OLC A 1 405 503 OLC OLC . I 5 OLC A 1 406 504 OLC OLC . J 5 OLC A 1 407 505 OLC OLC . K 5 OLC A 1 408 506 OLC OLC . L 6 UNL A 1 409 601 UNL UNL . M 6 UNL A 1 410 602 UNL UNL . N 6 UNL A 1 411 603 UNL UNL . O 6 UNL A 1 412 604 UNL UNL . P 6 UNL A 1 413 605 UNL UNL . Q 6 UNL A 1 414 606 UNL UNL . R 6 UNL A 1 415 607 UNL UNL . S 7 SIN A 1 416 701 SIN SIN . T 8 HOH A 1 501 810 HOH HOH . T 8 HOH A 2 502 801 HOH HOH . T 8 HOH A 3 503 802 HOH HOH . T 8 HOH A 4 504 803 HOH HOH . T 8 HOH A 5 505 805 HOH HOH . T 8 HOH A 6 506 807 HOH HOH . T 8 HOH A 7 507 808 HOH HOH . T 8 HOH A 8 508 809 HOH HOH . T 8 HOH A 9 509 811 HOH HOH . T 8 HOH A 10 510 813 HOH HOH . T 8 HOH A 11 511 814 HOH HOH . T 8 HOH A 12 512 815 HOH HOH . T 8 HOH A 13 513 816 HOH HOH . T 8 HOH A 14 514 817 HOH HOH . T 8 HOH A 15 515 818 HOH HOH . T 8 HOH A 16 516 819 HOH HOH . T 8 HOH A 17 517 820 HOH HOH . T 8 HOH A 18 518 821 HOH HOH . U 8 HOH B 1 101 804 HOH HOH . V 8 HOH C 1 201 806 HOH HOH . V 8 HOH C 2 202 812 HOH HOH . V 8 HOH C 3 203 201 HOH HOH . V 8 HOH C 4 204 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . K 5 116.155 17.678 251.85 1 123.44 ? C24 OLC 408 A 1 HETATM 2 C C7 OLC . . . K 5 117.094 22.681 242.654 1 56.68 ? C7 OLC 408 A 1 HETATM 3 C C6 OLC . . . K 5 116.287 23.002 243.912 1 58.82 ? C6 OLC 408 A 1 HETATM 4 C C5 OLC . . . K 5 116.184 21.765 244.81 1 64.6 ? C5 OLC 408 A 1 HETATM 5 C C4 OLC . . . K 5 115.312 22.02 246.042 1 68.34 ? C4 OLC 408 A 1 HETATM 6 C C3 OLC . . . K 5 115.342 20.818 246.985 1 72.1 ? C3 OLC 408 A 1 HETATM 7 C C2 OLC . . . K 5 114.1 20.792 247.874 1 73.72 ? C2 OLC 408 A 1 HETATM 8 C C21 OLC . . . K 5 115.319 19.094 249.982 1 110.23 ? C21 OLC 408 A 1 HETATM 9 C C1 OLC . . . K 5 114.408 21.31 249.261 1 91.12 ? C1 OLC 408 A 1 HETATM 10 C C22 OLC . . . K 5 114.914 18.137 251.089 1 116.97 ? C22 OLC 408 A 1 HETATM 11 O O19 OLC . . . K 5 114.263 22.494 249.521 1 89.61 ? O19 OLC 408 A 1 HETATM 12 O O25 OLC . . . K 5 115.758 16.727 252.854 1 113.97 ? O25 OLC 408 A 1 HETATM 13 O O23 OLC . . . K 5 114.031 18.825 251.981 1 111.47 ? O23 OLC 408 A 1 HETATM 14 O O20 OLC . . . K 5 114.861 20.402 250.305 1 103.43 ? O20 OLC 408 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #