data_4XT1 # _model_server_result.job_id x1jFItVMhPX7l-SM21IS2A _model_server_result.datetime_utc '2025-01-03 15:29:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xt1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":416}' # _entry.id 4XT1 # _exptl.entry_id 4XT1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XT1 _cell.length_a 81.024 _cell.length_b 81.024 _cell.length_c 231.303 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XT1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 23 1_555 A SG CYS 271 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 112 A CYS 104 1_555 A SG CYS 181 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 8 B CYS 8 1_555 B SG CYS 34 B CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 12 B CYS 12 1_555 B SG CYS 50 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 26 C CYS 22 1_555 C SG CYS 99 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B C PCA 1 B PCA 1 1_555 B N HIS 2 B HIS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 447 n n C1 O2 SIN sing 448 n n C1 C2 SIN sing 449 n n O2 HO2 SIN sing 450 n n C2 C3 SIN sing 451 n n C2 H21 SIN sing 452 n n C2 H22 SIN sing 453 n n C3 C4 SIN sing 454 n n C3 H31 SIN sing 455 n n C3 H32 SIN sing 456 n n C4 O3 SIN doub 457 n n C4 O4 SIN sing 458 n n O4 HO4 SIN sing 459 n n # _atom_sites.entry_id 4XT1 _atom_sites.fract_transf_matrix[1][1] 0.012342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CLR A 1 401 401 CLR CLR . E 4 CLR A 1 402 402 CLR CLR . F 5 OLC A 1 403 501 OLC OLC . G 5 OLC A 1 404 502 OLC OLC . H 5 OLC A 1 405 503 OLC OLC . I 5 OLC A 1 406 504 OLC OLC . J 5 OLC A 1 407 505 OLC OLC . K 5 OLC A 1 408 506 OLC OLC . L 6 UNL A 1 409 601 UNL UNL . M 6 UNL A 1 410 602 UNL UNL . N 6 UNL A 1 411 603 UNL UNL . O 6 UNL A 1 412 604 UNL UNL . P 6 UNL A 1 413 605 UNL UNL . Q 6 UNL A 1 414 606 UNL UNL . R 6 UNL A 1 415 607 UNL UNL . S 7 SIN A 1 416 701 SIN SIN . T 8 HOH A 1 501 810 HOH HOH . T 8 HOH A 2 502 801 HOH HOH . T 8 HOH A 3 503 802 HOH HOH . T 8 HOH A 4 504 803 HOH HOH . T 8 HOH A 5 505 805 HOH HOH . T 8 HOH A 6 506 807 HOH HOH . T 8 HOH A 7 507 808 HOH HOH . T 8 HOH A 8 508 809 HOH HOH . T 8 HOH A 9 509 811 HOH HOH . T 8 HOH A 10 510 813 HOH HOH . T 8 HOH A 11 511 814 HOH HOH . T 8 HOH A 12 512 815 HOH HOH . T 8 HOH A 13 513 816 HOH HOH . T 8 HOH A 14 514 817 HOH HOH . T 8 HOH A 15 515 818 HOH HOH . T 8 HOH A 16 516 819 HOH HOH . T 8 HOH A 17 517 820 HOH HOH . T 8 HOH A 18 518 821 HOH HOH . U 8 HOH B 1 101 804 HOH HOH . V 8 HOH C 1 201 806 HOH HOH . V 8 HOH C 2 202 812 HOH HOH . V 8 HOH C 3 203 201 HOH HOH . V 8 HOH C 4 204 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . S 7 94.962 28.415 240.325 1 89.35 ? C1 SIN 416 A 1 HETATM 2 O O1 SIN . . . S 7 95.198 27.957 239.175 1 73.87 ? O1 SIN 416 A 1 HETATM 3 O O2 SIN . . . S 7 95.557 28.001 241.353 1 107.2 ? O2 SIN 416 A 1 HETATM 4 C C2 SIN . . . S 7 93.899 29.516 240.438 1 84.34 ? C2 SIN 416 A 1 HETATM 5 C C3 SIN . . . S 7 93.563 29.909 241.868 1 79.28 ? C3 SIN 416 A 1 HETATM 6 C C4 SIN . . . S 7 92.565 31.067 241.989 1 89.13 ? C4 SIN 416 A 1 HETATM 7 O O3 SIN . . . S 7 92.152 31.664 240.964 1 86.31 ? O3 SIN 416 A 1 HETATM 8 O O4 SIN . . . S 7 92.188 31.378 243.152 1 98.57 ? O4 SIN 416 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #