data_4XT4 # _model_server_result.job_id uqVDbHC-Xz1T8y_nhzkTJw _model_server_result.datetime_utc '2024-11-21 17:25:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xt4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4XT4 # _exptl.entry_id 4XT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XT4 _cell.length_a 70.281 _cell.length_b 94.427 _cell.length_c 75.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 70.281 0 37.91 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 273 n n PA O2A NAP sing 274 n n PA O5B NAP sing 275 n n PA O3 NAP sing 276 n n O2A HOA2 NAP sing 277 n n O5B C5B NAP sing 278 n n C5B C4B NAP sing 279 n n C5B H51A NAP sing 280 n n C5B H52A NAP sing 281 n n C4B O4B NAP sing 282 n n C4B C3B NAP sing 283 n n C4B H4B NAP sing 284 n n O4B C1B NAP sing 285 n n C3B O3B NAP sing 286 n n C3B C2B NAP sing 287 n n C3B H3B NAP sing 288 n n O3B HO3A NAP sing 289 n n C2B O2B NAP sing 290 n n C2B C1B NAP sing 291 n n C2B H2B NAP sing 292 n n O2B P2B NAP sing 293 n n C1B N9A NAP sing 294 n n C1B H1B NAP sing 295 n n N9A C8A NAP sing 296 n y N9A C4A NAP sing 297 n y C8A N7A NAP doub 298 n y C8A H8A NAP sing 299 n n N7A C5A NAP sing 300 n y C5A C6A NAP sing 301 n y C5A C4A NAP doub 302 n y C6A N6A NAP sing 303 n n C6A N1A NAP doub 304 n y N6A H61A NAP sing 305 n n N6A H62A NAP sing 306 n n N1A C2A NAP sing 307 n y C2A N3A NAP doub 308 n y C2A H2A NAP sing 309 n n N3A C4A NAP sing 310 n y O3 PN NAP sing 311 n n PN O1N NAP doub 312 n n PN O2N NAP sing 313 n n PN O5D NAP sing 314 n n O5D C5D NAP sing 315 n n C5D C4D NAP sing 316 n n C5D H51N NAP sing 317 n n C5D H52N NAP sing 318 n n C4D O4D NAP sing 319 n n C4D C3D NAP sing 320 n n C4D H4D NAP sing 321 n n O4D C1D NAP sing 322 n n C3D O3D NAP sing 323 n n C3D C2D NAP sing 324 n n C3D H3D NAP sing 325 n n O3D HO3N NAP sing 326 n n C2D O2D NAP sing 327 n n C2D C1D NAP sing 328 n n C2D H2D NAP sing 329 n n O2D HO2N NAP sing 330 n n C1D N1N NAP sing 331 n n C1D H1D NAP sing 332 n n N1N C2N NAP sing 333 n y N1N C6N NAP doub 334 n y C2N C3N NAP doub 335 n y C2N H2N NAP sing 336 n n C3N C7N NAP sing 337 n n C3N C4N NAP sing 338 n y C7N O7N NAP doub 339 n n C7N N7N NAP sing 340 n n N7N H71N NAP sing 341 n n N7N H72N NAP sing 342 n n C4N C5N NAP doub 343 n y C4N H4N NAP sing 344 n n C5N C6N NAP sing 345 n y C5N H5N NAP sing 346 n n C6N H6N NAP sing 347 n n P2B O1X NAP doub 348 n n P2B O2X NAP sing 349 n n P2B O3X NAP sing 350 n n O2X HOP2 NAP sing 351 n n O3X HOP3 NAP sing 352 n n # _atom_sites.entry_id 4XT4 _atom_sites.fract_transf_matrix[1][1] 0.014229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 259 NAP NAP . C 3 44W A 1 302 260 44W DHP . D 4 GOL A 1 303 261 GOL GOL . E 4 GOL A 1 304 262 GOL GOL . F 5 HOH A 1 401 37 HOH HOH . F 5 HOH A 2 402 87 HOH HOH . F 5 HOH A 3 403 51 HOH HOH . F 5 HOH A 4 404 43 HOH HOH . F 5 HOH A 5 405 41 HOH HOH . F 5 HOH A 6 406 3 HOH HOH . F 5 HOH A 7 407 19 HOH HOH . F 5 HOH A 8 408 25 HOH HOH . F 5 HOH A 9 409 71 HOH HOH . F 5 HOH A 10 410 10 HOH HOH . F 5 HOH A 11 411 73 HOH HOH . F 5 HOH A 12 412 28 HOH HOH . F 5 HOH A 13 413 4 HOH HOH . F 5 HOH A 14 414 35 HOH HOH . F 5 HOH A 15 415 84 HOH HOH . F 5 HOH A 16 416 58 HOH HOH . F 5 HOH A 17 417 34 HOH HOH . F 5 HOH A 18 418 30 HOH HOH . F 5 HOH A 19 419 60 HOH HOH . F 5 HOH A 20 420 32 HOH HOH . F 5 HOH A 21 421 97 HOH HOH . F 5 HOH A 22 422 101 HOH HOH . F 5 HOH A 23 423 52 HOH HOH . F 5 HOH A 24 424 9 HOH HOH . F 5 HOH A 25 425 86 HOH HOH . F 5 HOH A 26 426 56 HOH HOH . F 5 HOH A 27 427 8 HOH HOH . F 5 HOH A 28 428 20 HOH HOH . F 5 HOH A 29 429 78 HOH HOH . F 5 HOH A 30 430 94 HOH HOH . F 5 HOH A 31 431 40 HOH HOH . F 5 HOH A 32 432 24 HOH HOH . F 5 HOH A 33 433 77 HOH HOH . F 5 HOH A 34 434 17 HOH HOH . F 5 HOH A 35 435 62 HOH HOH . F 5 HOH A 36 436 61 HOH HOH . F 5 HOH A 37 437 98 HOH HOH . F 5 HOH A 38 438 33 HOH HOH . F 5 HOH A 39 439 99 HOH HOH . F 5 HOH A 40 440 67 HOH HOH . F 5 HOH A 41 441 75 HOH HOH . F 5 HOH A 42 442 85 HOH HOH . F 5 HOH A 43 443 38 HOH HOH . F 5 HOH A 44 444 76 HOH HOH . F 5 HOH A 45 445 1 HOH HOH . F 5 HOH A 46 446 2 HOH HOH . F 5 HOH A 47 447 5 HOH HOH . F 5 HOH A 48 448 6 HOH HOH . F 5 HOH A 49 449 7 HOH HOH . F 5 HOH A 50 450 11 HOH HOH . F 5 HOH A 51 451 12 HOH HOH . F 5 HOH A 52 452 13 HOH HOH . F 5 HOH A 53 453 14 HOH HOH . F 5 HOH A 54 454 15 HOH HOH . F 5 HOH A 55 455 16 HOH HOH . F 5 HOH A 56 456 21 HOH HOH . F 5 HOH A 57 457 22 HOH HOH . F 5 HOH A 58 458 23 HOH HOH . F 5 HOH A 59 459 26 HOH HOH . F 5 HOH A 60 460 27 HOH HOH . F 5 HOH A 61 461 29 HOH HOH . F 5 HOH A 62 462 31 HOH HOH . F 5 HOH A 63 463 36 HOH HOH . F 5 HOH A 64 464 39 HOH HOH . F 5 HOH A 65 465 42 HOH HOH . F 5 HOH A 66 466 45 HOH HOH . F 5 HOH A 67 467 47 HOH HOH . F 5 HOH A 68 468 48 HOH HOH . F 5 HOH A 69 469 49 HOH HOH . F 5 HOH A 70 470 50 HOH HOH . F 5 HOH A 71 471 53 HOH HOH . F 5 HOH A 72 472 54 HOH HOH . F 5 HOH A 73 473 63 HOH HOH . F 5 HOH A 74 474 64 HOH HOH . F 5 HOH A 75 475 65 HOH HOH . F 5 HOH A 76 476 69 HOH HOH . F 5 HOH A 77 477 72 HOH HOH . F 5 HOH A 78 478 74 HOH HOH . F 5 HOH A 79 479 80 HOH HOH . F 5 HOH A 80 480 82 HOH HOH . F 5 HOH A 81 481 83 HOH HOH . F 5 HOH A 82 482 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 20.713 15.583 14.403 0.73 28.37 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . B 2 21.548 16.019 13.25 0.73 28.15 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . B 2 19.579 16.556 14.611 0.73 28.84 -1 O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . B 2 20.189 14.152 14.177 0.73 34.02 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . B 2 20.617 13.384 13.13 0.73 35.07 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . B 2 19.525 12.65 12.388 0.73 33.52 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . B 2 18.668 13.573 11.62 0.73 33.72 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . B 2 20.005 11.615 11.43 0.73 38.36 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . B 2 20.05 10.353 11.966 0.73 38.2 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . B 2 19.005 11.649 10.377 0.73 35.64 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . B 2 17.851 10.96 10.701 0.73 36.71 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . B 2 18.706 13.132 10.311 0.73 30.78 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . B 2 19.63 13.859 9.43 0.73 31.69 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . B 2 20.613 14.727 9.737 0.73 31.62 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . B 2 21.185 15.133 8.585 0.73 32.27 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . B 2 20.57 14.524 7.55 0.73 32.21 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . B 2 20.698 14.534 6.167 0.73 30.38 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . B 2 21.696 15.346 5.477 0.73 27.94 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . B 2 19.873 13.769 5.435 0.73 34.76 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . B 2 18.921 12.988 5.989 0.73 33.67 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . B 2 18.779 12.965 7.318 0.73 32 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . B 2 19.582 13.717 8.1 0.73 31.43 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . B 2 21.562 15.575 15.715 0.73 36.09 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . B 2 22.508 14.447 16.202 0.73 38.77 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . B 2 23.692 14.313 15.301 0.73 38.61 -1 O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . B 2 22.959 14.833 17.657 0.73 38.6 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . B 2 21.795 13.122 16.279 0.73 40.66 ? O5D NAP 301 A 1 HETATM 28 P P2B NAP . . . B 2 17.566 9.458 10.401 0.73 37.05 ? P2B NAP 301 A 1 HETATM 29 O O1X NAP . . . B 2 17.765 9.147 8.953 0.73 33.91 ? O1X NAP 301 A 1 HETATM 30 O O2X NAP . . . B 2 16.116 9.198 10.775 0.73 33.82 -1 O2X NAP 301 A 1 HETATM 31 O O3X NAP . . . B 2 18.458 8.601 11.246 0.73 40.54 -1 O3X NAP 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #