data_4XT4 # _model_server_result.job_id LYv8bGvd6gItEMuCGWTrAw _model_server_result.datetime_utc '2024-11-21 18:03:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xt4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4XT4 # _exptl.entry_id 4XT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XT4 _cell.length_a 70.281 _cell.length_b 94.427 _cell.length_c 75.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 70.281 0 37.91 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 152 n n C1 C2 GOL sing 153 n n C1 H11 GOL sing 154 n n C1 H12 GOL sing 155 n n O1 HO1 GOL sing 156 n n C2 O2 GOL sing 157 n n C2 C3 GOL sing 158 n n C2 H2 GOL sing 159 n n O2 HO2 GOL sing 160 n n C3 O3 GOL sing 161 n n C3 H31 GOL sing 162 n n C3 H32 GOL sing 163 n n O3 HO3 GOL sing 164 n n # _atom_sites.entry_id 4XT4 _atom_sites.fract_transf_matrix[1][1] 0.014229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 259 NAP NAP . C 3 44W A 1 302 260 44W DHP . D 4 GOL A 1 303 261 GOL GOL . E 4 GOL A 1 304 262 GOL GOL . F 5 HOH A 1 401 37 HOH HOH . F 5 HOH A 2 402 87 HOH HOH . F 5 HOH A 3 403 51 HOH HOH . F 5 HOH A 4 404 43 HOH HOH . F 5 HOH A 5 405 41 HOH HOH . F 5 HOH A 6 406 3 HOH HOH . F 5 HOH A 7 407 19 HOH HOH . F 5 HOH A 8 408 25 HOH HOH . F 5 HOH A 9 409 71 HOH HOH . F 5 HOH A 10 410 10 HOH HOH . F 5 HOH A 11 411 73 HOH HOH . F 5 HOH A 12 412 28 HOH HOH . F 5 HOH A 13 413 4 HOH HOH . F 5 HOH A 14 414 35 HOH HOH . F 5 HOH A 15 415 84 HOH HOH . F 5 HOH A 16 416 58 HOH HOH . F 5 HOH A 17 417 34 HOH HOH . F 5 HOH A 18 418 30 HOH HOH . F 5 HOH A 19 419 60 HOH HOH . F 5 HOH A 20 420 32 HOH HOH . F 5 HOH A 21 421 97 HOH HOH . F 5 HOH A 22 422 101 HOH HOH . F 5 HOH A 23 423 52 HOH HOH . F 5 HOH A 24 424 9 HOH HOH . F 5 HOH A 25 425 86 HOH HOH . F 5 HOH A 26 426 56 HOH HOH . F 5 HOH A 27 427 8 HOH HOH . F 5 HOH A 28 428 20 HOH HOH . F 5 HOH A 29 429 78 HOH HOH . F 5 HOH A 30 430 94 HOH HOH . F 5 HOH A 31 431 40 HOH HOH . F 5 HOH A 32 432 24 HOH HOH . F 5 HOH A 33 433 77 HOH HOH . F 5 HOH A 34 434 17 HOH HOH . F 5 HOH A 35 435 62 HOH HOH . F 5 HOH A 36 436 61 HOH HOH . F 5 HOH A 37 437 98 HOH HOH . F 5 HOH A 38 438 33 HOH HOH . F 5 HOH A 39 439 99 HOH HOH . F 5 HOH A 40 440 67 HOH HOH . F 5 HOH A 41 441 75 HOH HOH . F 5 HOH A 42 442 85 HOH HOH . F 5 HOH A 43 443 38 HOH HOH . F 5 HOH A 44 444 76 HOH HOH . F 5 HOH A 45 445 1 HOH HOH . F 5 HOH A 46 446 2 HOH HOH . F 5 HOH A 47 447 5 HOH HOH . F 5 HOH A 48 448 6 HOH HOH . F 5 HOH A 49 449 7 HOH HOH . F 5 HOH A 50 450 11 HOH HOH . F 5 HOH A 51 451 12 HOH HOH . F 5 HOH A 52 452 13 HOH HOH . F 5 HOH A 53 453 14 HOH HOH . F 5 HOH A 54 454 15 HOH HOH . F 5 HOH A 55 455 16 HOH HOH . F 5 HOH A 56 456 21 HOH HOH . F 5 HOH A 57 457 22 HOH HOH . F 5 HOH A 58 458 23 HOH HOH . F 5 HOH A 59 459 26 HOH HOH . F 5 HOH A 60 460 27 HOH HOH . F 5 HOH A 61 461 29 HOH HOH . F 5 HOH A 62 462 31 HOH HOH . F 5 HOH A 63 463 36 HOH HOH . F 5 HOH A 64 464 39 HOH HOH . F 5 HOH A 65 465 42 HOH HOH . F 5 HOH A 66 466 45 HOH HOH . F 5 HOH A 67 467 47 HOH HOH . F 5 HOH A 68 468 48 HOH HOH . F 5 HOH A 69 469 49 HOH HOH . F 5 HOH A 70 470 50 HOH HOH . F 5 HOH A 71 471 53 HOH HOH . F 5 HOH A 72 472 54 HOH HOH . F 5 HOH A 73 473 63 HOH HOH . F 5 HOH A 74 474 64 HOH HOH . F 5 HOH A 75 475 65 HOH HOH . F 5 HOH A 76 476 69 HOH HOH . F 5 HOH A 77 477 72 HOH HOH . F 5 HOH A 78 478 74 HOH HOH . F 5 HOH A 79 479 80 HOH HOH . F 5 HOH A 80 480 82 HOH HOH . F 5 HOH A 81 481 83 HOH HOH . F 5 HOH A 82 482 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 18.644 29.056 24.73 1 46.29 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 4 19.259 29.947 23.818 1 38.06 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 4 17.38 28.488 24.105 1 47.04 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 4 16.25 29.184 24.585 1 55.02 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 4 17.25 27.021 24.462 1 51.52 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 4 17.285 26.883 25.866 1 57.2 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 670 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #