data_4XT6
#
_model_server_result.job_id            qO9-EyGNjNyITuxaZaJ0KA 
_model_server_result.datetime_utc      '2024-11-21 16:41:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xt6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    4XT6 
#
_exptl.entry_id    4XT6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XT6 
_cell.length_a            70.428 
_cell.length_b            96.016 
_cell.length_c            76.107 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XT6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 70.428 0 38.0535 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 262 n n 
PA O2A NAP sing 263 n n 
PA O5B NAP sing 264 n n 
PA O3 NAP sing 265 n n 
O2A HOA2 NAP sing 266 n n 
O5B C5B NAP sing 267 n n 
C5B C4B NAP sing 268 n n 
C5B H51A NAP sing 269 n n 
C5B H52A NAP sing 270 n n 
C4B O4B NAP sing 271 n n 
C4B C3B NAP sing 272 n n 
C4B H4B NAP sing 273 n n 
O4B C1B NAP sing 274 n n 
C3B O3B NAP sing 275 n n 
C3B C2B NAP sing 276 n n 
C3B H3B NAP sing 277 n n 
O3B HO3A NAP sing 278 n n 
C2B O2B NAP sing 279 n n 
C2B C1B NAP sing 280 n n 
C2B H2B NAP sing 281 n n 
O2B P2B NAP sing 282 n n 
C1B N9A NAP sing 283 n n 
C1B H1B NAP sing 284 n n 
N9A C8A NAP sing 285 n y 
N9A C4A NAP sing 286 n y 
C8A N7A NAP doub 287 n y 
C8A H8A NAP sing 288 n n 
N7A C5A NAP sing 289 n y 
C5A C6A NAP sing 290 n y 
C5A C4A NAP doub 291 n y 
C6A N6A NAP sing 292 n n 
C6A N1A NAP doub 293 n y 
N6A H61A NAP sing 294 n n 
N6A H62A NAP sing 295 n n 
N1A C2A NAP sing 296 n y 
C2A N3A NAP doub 297 n y 
C2A H2A NAP sing 298 n n 
N3A C4A NAP sing 299 n y 
O3 PN NAP sing 300 n n 
PN O1N NAP doub 301 n n 
PN O2N NAP sing 302 n n 
PN O5D NAP sing 303 n n 
O5D C5D NAP sing 304 n n 
C5D C4D NAP sing 305 n n 
C5D H51N NAP sing 306 n n 
C5D H52N NAP sing 307 n n 
C4D O4D NAP sing 308 n n 
C4D C3D NAP sing 309 n n 
C4D H4D NAP sing 310 n n 
O4D C1D NAP sing 311 n n 
C3D O3D NAP sing 312 n n 
C3D C2D NAP sing 313 n n 
C3D H3D NAP sing 314 n n 
O3D HO3N NAP sing 315 n n 
C2D O2D NAP sing 316 n n 
C2D C1D NAP sing 317 n n 
C2D H2D NAP sing 318 n n 
O2D HO2N NAP sing 319 n n 
C1D N1N NAP sing 320 n n 
C1D H1D NAP sing 321 n n 
N1N C2N NAP sing 322 n y 
N1N C6N NAP doub 323 n y 
C2N C3N NAP doub 324 n y 
C2N H2N NAP sing 325 n n 
C3N C7N NAP sing 326 n n 
C3N C4N NAP sing 327 n y 
C7N O7N NAP doub 328 n n 
C7N N7N NAP sing 329 n n 
N7N H71N NAP sing 330 n n 
N7N H72N NAP sing 331 n n 
C4N C5N NAP doub 332 n y 
C4N H4N NAP sing 333 n n 
C5N C6N NAP sing 334 n y 
C5N H5N NAP sing 335 n n 
C6N H6N NAP sing 336 n n 
P2B O1X NAP doub 337 n n 
P2B O2X NAP sing 338 n n 
P2B O3X NAP sing 339 n n 
O2X HOP2 NAP sing 340 n n 
O3X HOP3 NAP sing 341 n n 
#
_atom_sites.entry_id                     4XT6 
_atom_sites.fract_transf_matrix[1][1]    0.014199 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010415 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013139 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 301 259 NAP NAP . 
C 3 44V A 1 302 260 44V THF . 
D 4 HOH A 1 401 15 HOH HOH . 
D 4 HOH A 2 402 33 HOH HOH . 
D 4 HOH A 3 403 39 HOH HOH . 
D 4 HOH A 4 404 37 HOH HOH . 
D 4 HOH A 5 405 19 HOH HOH . 
D 4 HOH A 6 406 67 HOH HOH . 
D 4 HOH A 7 407 16 HOH HOH . 
D 4 HOH A 8 408 66 HOH HOH . 
D 4 HOH A 9 409 14 HOH HOH . 
D 4 HOH A 10 410 54 HOH HOH . 
D 4 HOH A 11 411 35 HOH HOH . 
D 4 HOH A 12 412 46 HOH HOH . 
D 4 HOH A 13 413 65 HOH HOH . 
D 4 HOH A 14 414 44 HOH HOH . 
D 4 HOH A 15 415 17 HOH HOH . 
D 4 HOH A 16 416 36 HOH HOH . 
D 4 HOH A 17 417 18 HOH HOH . 
D 4 HOH A 18 418 31 HOH HOH . 
D 4 HOH A 19 419 13 HOH HOH . 
D 4 HOH A 20 420 9 HOH HOH . 
D 4 HOH A 21 421 6 HOH HOH . 
D 4 HOH A 22 422 45 HOH HOH . 
D 4 HOH A 23 423 51 HOH HOH . 
D 4 HOH A 24 424 80 HOH HOH . 
D 4 HOH A 25 425 72 HOH HOH . 
D 4 HOH A 26 426 89 HOH HOH . 
D 4 HOH A 27 427 55 HOH HOH . 
D 4 HOH A 28 428 1 HOH HOH . 
D 4 HOH A 29 429 2 HOH HOH . 
D 4 HOH A 30 430 3 HOH HOH . 
D 4 HOH A 31 431 4 HOH HOH . 
D 4 HOH A 32 432 5 HOH HOH . 
D 4 HOH A 33 433 7 HOH HOH . 
D 4 HOH A 34 434 10 HOH HOH . 
D 4 HOH A 35 435 11 HOH HOH . 
D 4 HOH A 36 436 12 HOH HOH . 
D 4 HOH A 37 437 23 HOH HOH . 
D 4 HOH A 38 438 24 HOH HOH . 
D 4 HOH A 39 439 25 HOH HOH . 
D 4 HOH A 40 440 26 HOH HOH . 
D 4 HOH A 41 441 27 HOH HOH . 
D 4 HOH A 42 442 28 HOH HOH . 
D 4 HOH A 43 443 29 HOH HOH . 
D 4 HOH A 44 444 32 HOH HOH . 
D 4 HOH A 45 445 34 HOH HOH . 
D 4 HOH A 46 446 38 HOH HOH . 
D 4 HOH A 47 447 40 HOH HOH . 
D 4 HOH A 48 448 42 HOH HOH . 
D 4 HOH A 49 449 47 HOH HOH . 
D 4 HOH A 50 450 50 HOH HOH . 
D 4 HOH A 51 451 52 HOH HOH . 
D 4 HOH A 52 452 53 HOH HOH . 
D 4 HOH A 53 453 57 HOH HOH . 
D 4 HOH A 54 454 59 HOH HOH . 
D 4 HOH A 55 455 60 HOH HOH . 
D 4 HOH A 56 456 61 HOH HOH . 
D 4 HOH A 57 457 62 HOH HOH . 
D 4 HOH A 58 458 63 HOH HOH . 
D 4 HOH A 59 459 69 HOH HOH . 
D 4 HOH A 60 460 70 HOH HOH . 
D 4 HOH A 61 461 74 HOH HOH . 
D 4 HOH A 62 462 76 HOH HOH . 
D 4 HOH A 63 463 82 HOH HOH . 
D 4 HOH A 64 464 83 HOH HOH . 
D 4 HOH A 65 465 84 HOH HOH . 
D 4 HOH A 66 466 85 HOH HOH . 
D 4 HOH A 67 467 86 HOH HOH . 
D 4 HOH A 68 468 87 HOH HOH . 
D 4 HOH A 69 469 88 HOH HOH . 
D 4 HOH A 70 470 90 HOH HOH . 
D 4 HOH A 71 471 91 HOH HOH . 
D 4 HOH A 72 472 92 HOH HOH . 
D 4 HOH A 73 473 93 HOH HOH . 
D 4 HOH A 74 474 94 HOH HOH . 
D 4 HOH A 75 475 95 HOH HOH . 
D 4 HOH A 76 476 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . B 2 20.614 15.871 14.518 1 29.79 ? PA NAP 301 A 1 
HETATM 2 O O1A NAP . . . B 2 21.577 16.337 13.481 1 27.87 ? O1A NAP 301 A 1 
HETATM 3 O O2A NAP . . . B 2 19.476 16.857 14.681 1 30.54 -1 O2A NAP 301 A 1 
HETATM 4 O O5B NAP . . . B 2 20.062 14.465 14.227 1 36.03 ? O5B NAP 301 A 1 
HETATM 5 C C5B NAP . . . B 2 20.541 13.668 13.23 1 38.06 ? C5B NAP 301 A 1 
HETATM 6 C C4B NAP . . . B 2 19.465 12.882 12.519 1 39.01 ? C4B NAP 301 A 1 
HETATM 7 O O4B NAP . . . B 2 18.575 13.767 11.75 1 38.58 ? O4B NAP 301 A 1 
HETATM 8 C C3B NAP . . . B 2 19.962 11.861 11.56 1 43.84 ? C3B NAP 301 A 1 
HETATM 9 O O3B NAP . . . B 2 20.097 10.62 12.132 1 46.79 ? O3B NAP 301 A 1 
HETATM 10 C C2B NAP . . . B 2 18.916 11.837 10.549 1 40.57 ? C2B NAP 301 A 1 
HETATM 11 O O2B NAP . . . B 2 17.784 11.148 10.954 1 39.4 ? O2B NAP 301 A 1 
HETATM 12 C C1B NAP . . . B 2 18.605 13.313 10.44 1 34.54 ? C1B NAP 301 A 1 
HETATM 13 N N9A NAP . . . B 2 19.553 14.02 9.571 1 35.66 ? N9A NAP 301 A 1 
HETATM 14 C C8A NAP . . . B 2 20.543 14.873 9.919 1 35.22 ? C8A NAP 301 A 1 
HETATM 15 N N7A NAP . . . B 2 21.162 15.277 8.79 1 33.32 ? N7A NAP 301 A 1 
HETATM 16 C C5A NAP . . . B 2 20.566 14.681 7.728 1 37.05 ? C5A NAP 301 A 1 
HETATM 17 C C6A NAP . . . B 2 20.748 14.698 6.35 1 31.68 ? C6A NAP 301 A 1 
HETATM 18 N N6A NAP . . . B 2 21.788 15.511 5.732 1 33.92 ? N6A NAP 301 A 1 
HETATM 19 N N1A NAP . . . B 2 19.946 13.951 5.57 1 39.01 ? N1A NAP 301 A 1 
HETATM 20 C C2A NAP . . . B 2 18.963 13.182 6.083 1 37.23 ? C2A NAP 301 A 1 
HETATM 21 N N3A NAP . . . B 2 18.767 13.15 7.406 1 37.39 ? N3A NAP 301 A 1 
HETATM 22 C C4A NAP . . . B 2 19.549 13.882 8.234 1 38.21 ? C4A NAP 301 A 1 
HETATM 23 O O3 NAP . . . B 2 21.312 15.779 15.922 1 41.49 ? O3 NAP 301 A 1 
HETATM 24 P PN NAP . . . B 2 22.47 14.847 16.363 1 45.36 ? PN NAP 301 A 1 
HETATM 25 O O1N NAP . . . B 2 23.718 15.087 15.576 1 41.9 -1 O1N NAP 301 A 1 
HETATM 26 O O2N NAP . . . B 2 22.76 15.146 17.885 1 52.55 ? O2N NAP 301 A 1 
HETATM 27 O O5D NAP . . . B 2 22.067 13.399 16.23 1 49.21 ? O5D NAP 301 A 1 
HETATM 28 P P2B NAP . . . B 2 17.411 9.725 10.426 1 44.14 ? P2B NAP 301 A 1 
HETATM 29 O O1X NAP . . . B 2 17.515 9.658 8.934 1 41.4 ? O1X NAP 301 A 1 
HETATM 30 O O2X NAP . . . B 2 15.986 9.407 10.844 1 44.17 -1 O2X NAP 301 A 1 
HETATM 31 O O3X NAP . . . B 2 18.329 8.704 11.026 1 54.87 -1 O3X NAP 301 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#