data_4XT7 # _model_server_result.job_id RRi7ysbvmicVpJ7L5oGemw _model_server_result.datetime_utc '2024-11-02 03:34:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xt7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4XT7 # _exptl.entry_id 4XT7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XT7 _cell.length_a 69.017 _cell.length_b 93.128 _cell.length_c 74.572 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XT7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 69.017 0 37.286 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 250 n n PA O2A NAP sing 251 n n PA O5B NAP sing 252 n n PA O3 NAP sing 253 n n O2A HOA2 NAP sing 254 n n O5B C5B NAP sing 255 n n C5B C4B NAP sing 256 n n C5B H51A NAP sing 257 n n C5B H52A NAP sing 258 n n C4B O4B NAP sing 259 n n C4B C3B NAP sing 260 n n C4B H4B NAP sing 261 n n O4B C1B NAP sing 262 n n C3B O3B NAP sing 263 n n C3B C2B NAP sing 264 n n C3B H3B NAP sing 265 n n O3B HO3A NAP sing 266 n n C2B O2B NAP sing 267 n n C2B C1B NAP sing 268 n n C2B H2B NAP sing 269 n n O2B P2B NAP sing 270 n n C1B N9A NAP sing 271 n n C1B H1B NAP sing 272 n n N9A C8A NAP sing 273 n y N9A C4A NAP sing 274 n y C8A N7A NAP doub 275 n y C8A H8A NAP sing 276 n n N7A C5A NAP sing 277 n y C5A C6A NAP sing 278 n y C5A C4A NAP doub 279 n y C6A N6A NAP sing 280 n n C6A N1A NAP doub 281 n y N6A H61A NAP sing 282 n n N6A H62A NAP sing 283 n n N1A C2A NAP sing 284 n y C2A N3A NAP doub 285 n y C2A H2A NAP sing 286 n n N3A C4A NAP sing 287 n y O3 PN NAP sing 288 n n PN O1N NAP doub 289 n n PN O2N NAP sing 290 n n PN O5D NAP sing 291 n n O5D C5D NAP sing 292 n n C5D C4D NAP sing 293 n n C5D H51N NAP sing 294 n n C5D H52N NAP sing 295 n n C4D O4D NAP sing 296 n n C4D C3D NAP sing 297 n n C4D H4D NAP sing 298 n n O4D C1D NAP sing 299 n n C3D O3D NAP sing 300 n n C3D C2D NAP sing 301 n n C3D H3D NAP sing 302 n n O3D HO3N NAP sing 303 n n C2D O2D NAP sing 304 n n C2D C1D NAP sing 305 n n C2D H2D NAP sing 306 n n O2D HO2N NAP sing 307 n n C1D N1N NAP sing 308 n n C1D H1D NAP sing 309 n n N1N C2N NAP sing 310 n y N1N C6N NAP doub 311 n y C2N C3N NAP doub 312 n y C2N H2N NAP sing 313 n n C3N C7N NAP sing 314 n n C3N C4N NAP sing 315 n y C7N O7N NAP doub 316 n n C7N N7N NAP sing 317 n n N7N H71N NAP sing 318 n n N7N H72N NAP sing 319 n n C4N C5N NAP doub 320 n y C4N H4N NAP sing 321 n n C5N C6N NAP sing 322 n y C5N H5N NAP sing 323 n n C6N H6N NAP sing 324 n n P2B O1X NAP doub 325 n n P2B O2X NAP sing 326 n n P2B O3X NAP sing 327 n n O2X HOP2 NAP sing 328 n n O3X HOP3 NAP sing 329 n n # _atom_sites.entry_id 4XT7 _atom_sites.fract_transf_matrix[1][1] 0.014489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 259 NAP NAP . C 3 TOP A 1 302 260 TOP TMP . D 4 GOL A 1 303 261 GOL GOL . E 5 PEG A 1 304 262 PEG DEG . F 6 HOH A 1 401 38 HOH HOH . F 6 HOH A 2 402 7 HOH HOH . F 6 HOH A 3 403 70 HOH HOH . F 6 HOH A 4 404 71 HOH HOH . F 6 HOH A 5 405 12 HOH HOH . F 6 HOH A 6 406 52 HOH HOH . F 6 HOH A 7 407 3 HOH HOH . F 6 HOH A 8 408 4 HOH HOH . F 6 HOH A 9 409 45 HOH HOH . F 6 HOH A 10 410 8 HOH HOH . F 6 HOH A 11 411 50 HOH HOH . F 6 HOH A 12 412 78 HOH HOH . F 6 HOH A 13 413 56 HOH HOH . F 6 HOH A 14 414 29 HOH HOH . F 6 HOH A 15 415 43 HOH HOH . F 6 HOH A 16 416 37 HOH HOH . F 6 HOH A 17 417 60 HOH HOH . F 6 HOH A 18 418 65 HOH HOH . F 6 HOH A 19 419 21 HOH HOH . F 6 HOH A 20 420 20 HOH HOH . F 6 HOH A 21 421 81 HOH HOH . F 6 HOH A 22 422 68 HOH HOH . F 6 HOH A 23 423 19 HOH HOH . F 6 HOH A 24 424 11 HOH HOH . F 6 HOH A 25 425 77 HOH HOH . F 6 HOH A 26 426 28 HOH HOH . F 6 HOH A 27 427 76 HOH HOH . F 6 HOH A 28 428 53 HOH HOH . F 6 HOH A 29 429 55 HOH HOH . F 6 HOH A 30 430 1 HOH HOH . F 6 HOH A 31 431 2 HOH HOH . F 6 HOH A 32 432 5 HOH HOH . F 6 HOH A 33 433 6 HOH HOH . F 6 HOH A 34 434 9 HOH HOH . F 6 HOH A 35 435 10 HOH HOH . F 6 HOH A 36 436 13 HOH HOH . F 6 HOH A 37 437 14 HOH HOH . F 6 HOH A 38 438 15 HOH HOH . F 6 HOH A 39 439 16 HOH HOH . F 6 HOH A 40 440 22 HOH HOH . F 6 HOH A 41 441 24 HOH HOH . F 6 HOH A 42 442 25 HOH HOH . F 6 HOH A 43 443 30 HOH HOH . F 6 HOH A 44 444 31 HOH HOH . F 6 HOH A 45 445 33 HOH HOH . F 6 HOH A 46 446 34 HOH HOH . F 6 HOH A 47 447 39 HOH HOH . F 6 HOH A 48 448 41 HOH HOH . F 6 HOH A 49 449 42 HOH HOH . F 6 HOH A 50 450 44 HOH HOH . F 6 HOH A 51 451 46 HOH HOH . F 6 HOH A 52 452 47 HOH HOH . F 6 HOH A 53 453 48 HOH HOH . F 6 HOH A 54 454 49 HOH HOH . F 6 HOH A 55 455 51 HOH HOH . F 6 HOH A 56 456 59 HOH HOH . F 6 HOH A 57 457 62 HOH HOH . F 6 HOH A 58 458 67 HOH HOH . F 6 HOH A 59 459 69 HOH HOH . F 6 HOH A 60 460 72 HOH HOH . F 6 HOH A 61 461 75 HOH HOH . F 6 HOH A 62 462 80 HOH HOH . F 6 HOH A 63 463 82 HOH HOH . F 6 HOH A 64 464 83 HOH HOH . F 6 HOH A 65 465 84 HOH HOH . F 6 HOH A 66 466 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 20.43 15.746 14.099 1 24.15 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . B 2 21.327 16.19 12.927 1 25.72 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . B 2 19.246 16.68 14.279 1 26.4 -1 O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . B 2 19.837 14.324 13.899 1 27.29 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . B 2 20.369 13.395 13.051 1 22.77 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . B 2 19.287 12.697 12.274 1 27.73 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . B 2 18.447 13.674 11.556 1 24.96 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . B 2 19.768 11.738 11.251 1 27.98 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . B 2 19.852 10.467 11.738 1 20.97 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . B 2 18.721 11.795 10.248 1 24.91 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . B 2 17.559 11.159 10.629 1 27.95 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . B 2 18.423 13.27 10.239 1 22.12 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . B 2 19.315 13.988 9.329 1 24.13 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . B 2 20.307 14.855 9.602 1 24.48 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . B 2 20.833 15.253 8.432 1 22.54 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . B 2 20.171 14.633 7.431 1 23.02 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . B 2 20.238 14.639 6.055 1 19.18 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . B 2 21.218 15.451 5.391 1 18.88 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . B 2 19.394 13.883 5.328 1 24.73 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . B 2 18.456 13.105 5.921 1 25.4 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . B 2 18.361 13.081 7.255 1 24.43 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . B 2 19.208 13.831 8.011 1 24.12 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . B 2 21.228 15.724 15.45 1 36.82 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . B 2 22.41 14.774 15.815 1 31.11 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . B 2 23.479 14.792 14.749 1 32.26 -1 O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . B 2 21.867 13.386 16.055 1 27.9 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . B 2 23.031 15.366 17.148 1 39.32 ? O5D NAP 301 A 1 HETATM 28 C C5D NAP . . . B 2 22.301 15.453 18.339 1 34.7 ? C5D NAP 301 A 1 HETATM 29 C C4D NAP . . . B 2 22.969 16.299 19.435 1 44.38 ? C4D NAP 301 A 1 HETATM 30 O O4D NAP . . . B 2 23.529 17.507 19.015 1 43.83 ? O4D NAP 301 A 1 HETATM 31 C C3D NAP . . . B 2 21.999 16.626 20.57 1 41.99 ? C3D NAP 301 A 1 HETATM 32 O O3D NAP . . . B 2 22.594 16.332 21.741 1 40.77 ? O3D NAP 301 A 1 HETATM 33 C C2D NAP . . . B 2 21.742 18.06 20.475 1 41.08 ? C2D NAP 301 A 1 HETATM 34 O O2D NAP . . . B 2 21.553 18.638 21.721 1 40 ? O2D NAP 301 A 1 HETATM 35 C C1D NAP . . . B 2 22.976 18.615 19.856 1 42.72 ? C1D NAP 301 A 1 HETATM 36 N N1N NAP . . . B 2 22.733 19.954 19.252 1 40.68 ? N1N NAP 301 A 1 HETATM 37 C C2N NAP . . . B 2 23.538 20.998 19.556 1 39.46 ? C2N NAP 301 A 1 HETATM 38 C C3N NAP . . . B 2 23.309 22.259 19.008 1 39.67 ? C3N NAP 301 A 1 HETATM 39 C C7N NAP . . . B 2 24.21 23.429 19.333 1 31.16 ? C7N NAP 301 A 1 HETATM 40 O O7N NAP . . . B 2 24.029 24.499 18.786 1 30.53 ? O7N NAP 301 A 1 HETATM 41 N N7N NAP . . . B 2 25.3 23.332 20.307 1 29.66 ? N7N NAP 301 A 1 HETATM 42 C C4N NAP . . . B 2 22.226 22.427 18.151 1 34.21 ? C4N NAP 301 A 1 HETATM 43 C C5N NAP . . . B 2 21.4 21.342 17.853 1 31.94 ? C5N NAP 301 A 1 HETATM 44 C C6N NAP . . . B 2 21.674 20.113 18.433 1 38.76 ? C6N NAP 301 A 1 HETATM 45 P P2B NAP . . . B 2 17.233 9.663 10.266 1 29.28 ? P2B NAP 301 A 1 HETATM 46 O O1X NAP . . . B 2 17.482 9.378 8.8 1 30.5 ? O1X NAP 301 A 1 HETATM 47 O O2X NAP . . . B 2 15.757 9.43 10.598 1 29.44 -1 O2X NAP 301 A 1 HETATM 48 O O3X NAP . . . B 2 18.075 8.753 11.139 1 28.6 -1 O3X NAP 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #