data_4XT8 # _model_server_result.job_id 0f2mIR7OBz6t0CYa2OhHAA _model_server_result.datetime_utc '2024-11-23 07:54:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4XT8 # _exptl.entry_id 4XT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XT8 _cell.length_a 69.391 _cell.length_b 93.612 _cell.length_c 74.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 69.391 0 37.16 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 259 n n PA O2A NAP sing 260 n n PA O5B NAP sing 261 n n PA O3 NAP sing 262 n n O2A HOA2 NAP sing 263 n n O5B C5B NAP sing 264 n n C5B C4B NAP sing 265 n n C5B H51A NAP sing 266 n n C5B H52A NAP sing 267 n n C4B O4B NAP sing 268 n n C4B C3B NAP sing 269 n n C4B H4B NAP sing 270 n n O4B C1B NAP sing 271 n n C3B O3B NAP sing 272 n n C3B C2B NAP sing 273 n n C3B H3B NAP sing 274 n n O3B HO3A NAP sing 275 n n C2B O2B NAP sing 276 n n C2B C1B NAP sing 277 n n C2B H2B NAP sing 278 n n O2B P2B NAP sing 279 n n C1B N9A NAP sing 280 n n C1B H1B NAP sing 281 n n N9A C8A NAP sing 282 n y N9A C4A NAP sing 283 n y C8A N7A NAP doub 284 n y C8A H8A NAP sing 285 n n N7A C5A NAP sing 286 n y C5A C6A NAP sing 287 n y C5A C4A NAP doub 288 n y C6A N6A NAP sing 289 n n C6A N1A NAP doub 290 n y N6A H61A NAP sing 291 n n N6A H62A NAP sing 292 n n N1A C2A NAP sing 293 n y C2A N3A NAP doub 294 n y C2A H2A NAP sing 295 n n N3A C4A NAP sing 296 n y O3 PN NAP sing 297 n n PN O1N NAP doub 298 n n PN O2N NAP sing 299 n n PN O5D NAP sing 300 n n O5D C5D NAP sing 301 n n C5D C4D NAP sing 302 n n C5D H51N NAP sing 303 n n C5D H52N NAP sing 304 n n C4D O4D NAP sing 305 n n C4D C3D NAP sing 306 n n C4D H4D NAP sing 307 n n O4D C1D NAP sing 308 n n C3D O3D NAP sing 309 n n C3D C2D NAP sing 310 n n C3D H3D NAP sing 311 n n O3D HO3N NAP sing 312 n n C2D O2D NAP sing 313 n n C2D C1D NAP sing 314 n n C2D H2D NAP sing 315 n n O2D HO2N NAP sing 316 n n C1D N1N NAP sing 317 n n C1D H1D NAP sing 318 n n N1N C2N NAP sing 319 n y N1N C6N NAP doub 320 n y C2N C3N NAP doub 321 n y C2N H2N NAP sing 322 n n C3N C7N NAP sing 323 n n C3N C4N NAP sing 324 n y C7N O7N NAP doub 325 n n C7N N7N NAP sing 326 n n N7N H71N NAP sing 327 n n N7N H72N NAP sing 328 n n C4N C5N NAP doub 329 n y C4N H4N NAP sing 330 n n C5N C6N NAP sing 331 n y C5N H5N NAP sing 332 n n C6N H6N NAP sing 333 n n P2B O1X NAP doub 334 n n P2B O2X NAP sing 335 n n P2B O3X NAP sing 336 n n O2X HOP2 NAP sing 337 n n O3X HOP3 NAP sing 338 n n # _atom_sites.entry_id 4XT8 _atom_sites.fract_transf_matrix[1][1] 0.014411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 259 NAP NAP . C 3 TMQ A 1 302 260 TMQ TMQ . D 4 PEG A 1 303 261 PEG DEG . E 5 GOL A 1 304 262 GOL GOL . F 4 PEG A 1 305 263 PEG DEG . G 6 EDO A 1 306 264 EDO EDO . H 6 EDO A 1 307 265 EDO EDO . I 7 HOH A 1 401 34 HOH HOH . I 7 HOH A 2 402 9 HOH HOH . I 7 HOH A 3 403 109 HOH HOH . I 7 HOH A 4 404 13 HOH HOH . I 7 HOH A 5 405 15 HOH HOH . I 7 HOH A 6 406 115 HOH HOH . I 7 HOH A 7 407 22 HOH HOH . I 7 HOH A 8 408 5 HOH HOH . I 7 HOH A 9 409 113 HOH HOH . I 7 HOH A 10 410 56 HOH HOH . I 7 HOH A 11 411 35 HOH HOH . I 7 HOH A 12 412 53 HOH HOH . I 7 HOH A 13 413 20 HOH HOH . I 7 HOH A 14 414 66 HOH HOH . I 7 HOH A 15 415 63 HOH HOH . I 7 HOH A 16 416 30 HOH HOH . I 7 HOH A 17 417 38 HOH HOH . I 7 HOH A 18 418 41 HOH HOH . I 7 HOH A 19 419 110 HOH HOH . I 7 HOH A 20 420 111 HOH HOH . I 7 HOH A 21 421 23 HOH HOH . I 7 HOH A 22 422 104 HOH HOH . I 7 HOH A 23 423 70 HOH HOH . I 7 HOH A 24 424 16 HOH HOH . I 7 HOH A 25 425 36 HOH HOH . I 7 HOH A 26 426 112 HOH HOH . I 7 HOH A 27 427 17 HOH HOH . I 7 HOH A 28 428 100 HOH HOH . I 7 HOH A 29 429 21 HOH HOH . I 7 HOH A 30 430 18 HOH HOH . I 7 HOH A 31 431 1 HOH HOH . I 7 HOH A 32 432 2 HOH HOH . I 7 HOH A 33 433 3 HOH HOH . I 7 HOH A 34 434 4 HOH HOH . I 7 HOH A 35 435 7 HOH HOH . I 7 HOH A 36 436 8 HOH HOH . I 7 HOH A 37 437 10 HOH HOH . I 7 HOH A 38 438 11 HOH HOH . I 7 HOH A 39 439 14 HOH HOH . I 7 HOH A 40 440 24 HOH HOH . I 7 HOH A 41 441 26 HOH HOH . I 7 HOH A 42 442 27 HOH HOH . I 7 HOH A 43 443 28 HOH HOH . I 7 HOH A 44 444 31 HOH HOH . I 7 HOH A 45 445 32 HOH HOH . I 7 HOH A 46 446 39 HOH HOH . I 7 HOH A 47 447 43 HOH HOH . I 7 HOH A 48 448 44 HOH HOH . I 7 HOH A 49 449 47 HOH HOH . I 7 HOH A 50 450 48 HOH HOH . I 7 HOH A 51 451 51 HOH HOH . I 7 HOH A 52 452 52 HOH HOH . I 7 HOH A 53 453 54 HOH HOH . I 7 HOH A 54 454 55 HOH HOH . I 7 HOH A 55 455 57 HOH HOH . I 7 HOH A 56 456 58 HOH HOH . I 7 HOH A 57 457 60 HOH HOH . I 7 HOH A 58 458 62 HOH HOH . I 7 HOH A 59 459 65 HOH HOH . I 7 HOH A 60 460 67 HOH HOH . I 7 HOH A 61 461 68 HOH HOH . I 7 HOH A 62 462 69 HOH HOH . I 7 HOH A 63 463 71 HOH HOH . I 7 HOH A 64 464 72 HOH HOH . I 7 HOH A 65 465 73 HOH HOH . I 7 HOH A 66 466 75 HOH HOH . I 7 HOH A 67 467 76 HOH HOH . I 7 HOH A 68 468 78 HOH HOH . I 7 HOH A 69 469 80 HOH HOH . I 7 HOH A 70 470 81 HOH HOH . I 7 HOH A 71 471 82 HOH HOH . I 7 HOH A 72 472 84 HOH HOH . I 7 HOH A 73 473 86 HOH HOH . I 7 HOH A 74 474 87 HOH HOH . I 7 HOH A 75 475 92 HOH HOH . I 7 HOH A 76 476 94 HOH HOH . I 7 HOH A 77 477 95 HOH HOH . I 7 HOH A 78 478 96 HOH HOH . I 7 HOH A 79 479 97 HOH HOH . I 7 HOH A 80 480 106 HOH HOH . I 7 HOH A 81 481 107 HOH HOH . I 7 HOH A 82 482 108 HOH HOH . I 7 HOH A 83 483 114 HOH HOH . I 7 HOH A 84 484 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 20.613 15.994 14.177 1 18.62 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . B 2 21.48 16.355 13.001 1 17.69 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . B 2 19.524 17.035 14.366 1 19.82 -1 O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . B 2 19.937 14.616 14.032 1 19.51 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . B 2 20.409 13.635 13.214 1 23.78 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . B 2 19.32 12.978 12.413 1 18.14 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . B 2 18.573 13.955 11.607 1 19.91 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . B 2 19.814 11.949 11.467 1 24.49 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . B 2 19.912 10.709 12.055 1 18.11 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . B 2 18.769 11.96 10.465 1 17.93 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . B 2 17.607 11.373 10.922 1 23.25 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . B 2 18.52 13.443 10.335 1 14.19 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . B 2 19.402 14.148 9.407 1 18.44 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . B 2 20.386 15.026 9.671 1 21.89 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . B 2 20.901 15.436 8.501 1 22.42 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . B 2 20.221 14.824 7.508 1 22.85 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . B 2 20.284 14.841 6.133 1 16.43 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . B 2 21.259 15.68 5.473 1 22.72 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . B 2 19.433 14.083 5.42 1 18.83 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . B 2 18.506 13.299 6.017 1 24.21 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . B 2 18.423 13.254 7.353 1 19.14 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . B 2 19.267 14.009 8.094 1 22.47 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . B 2 21.44 15.989 15.49 1 25.33 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . B 2 22.539 15.004 15.919 1 26.39 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . B 2 23.694 14.955 14.958 1 24.45 -1 O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . B 2 21.974 13.639 16.159 1 25.81 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . B 2 23.067 15.58 17.284 1 26.91 ? O5D NAP 301 A 1 HETATM 28 C C5D NAP . . . B 2 22.206 15.972 18.313 1 25.12 ? C5D NAP 301 A 1 HETATM 29 C C4D NAP . . . B 2 22.952 16.683 19.451 1 32.13 ? C4D NAP 301 A 1 HETATM 30 O O4D NAP . . . B 2 23.571 17.873 19.082 1 29.71 ? O4D NAP 301 A 1 HETATM 31 C C3D NAP . . . B 2 22.088 16.985 20.672 1 29.42 ? C3D NAP 301 A 1 HETATM 32 O O3D NAP . . . B 2 22.833 16.66 21.752 1 26.24 ? O3D NAP 301 A 1 HETATM 33 C C2D NAP . . . B 2 21.867 18.422 20.637 1 26.77 ? C2D NAP 301 A 1 HETATM 34 O O2D NAP . . . B 2 21.788 18.916 21.928 1 27.8 ? O2D NAP 301 A 1 HETATM 35 C C1D NAP . . . B 2 23.082 18.967 19.963 1 32.86 ? C1D NAP 301 A 1 HETATM 36 N N1N NAP . . . B 2 22.917 20.294 19.312 1 26.21 ? N1N NAP 301 A 1 HETATM 37 C C2N NAP . . . B 2 23.704 21.324 19.658 1 25.66 ? C2N NAP 301 A 1 HETATM 38 C C3N NAP . . . B 2 23.533 22.557 19.048 1 25.32 ? C3N NAP 301 A 1 HETATM 39 C C7N NAP . . . B 2 24.41 23.698 19.438 1 21.91 ? C7N NAP 301 A 1 HETATM 40 O O7N NAP . . . B 2 24.254 24.784 18.917 1 23.58 ? O7N NAP 301 A 1 HETATM 41 N N7N NAP . . . B 2 25.434 23.497 20.459 1 19.19 ? N7N NAP 301 A 1 HETATM 42 C C4N NAP . . . B 2 22.556 22.729 18.083 1 24.8 ? C4N NAP 301 A 1 HETATM 43 C C5N NAP . . . B 2 21.748 21.656 17.736 1 16.36 ? C5N NAP 301 A 1 HETATM 44 C C6N NAP . . . B 2 21.967 20.457 18.384 1 26.48 ? C6N NAP 301 A 1 HETATM 45 P P2B NAP . . . B 2 17.266 9.897 10.56 1 27.28 ? P2B NAP 301 A 1 HETATM 46 O O1X NAP . . . B 2 17.556 9.622 9.114 1 21.64 ? O1X NAP 301 A 1 HETATM 47 O O2X NAP . . . B 2 15.781 9.705 10.809 1 23.41 -1 O2X NAP 301 A 1 HETATM 48 O O3X NAP . . . B 2 18.086 8.993 11.427 1 29.25 -1 O3X NAP 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #