data_4XT8 # _model_server_result.job_id HOsk_WQUVqY5JrC2XavhMg _model_server_result.datetime_utc '2024-11-23 07:24:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4XT8 # _exptl.entry_id 4XT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.426 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIMETREXATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XT8 _cell.length_a 69.391 _cell.length_b 93.612 _cell.length_c 74.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 69.391 0 37.16 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H24 N5 O3 1' _chem_comp.formula_weight 370.426 _chem_comp.id TMQ _chem_comp.mon_nstd_flag . _chem_comp.name TRIMETREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 TMQ doub 424 n y N1 C3A TMQ sing 425 n y N1 HN TMQ sing 426 n n C2 N3 TMQ sing 427 n y C2 N24 TMQ sing 428 n n N3 C4 TMQ doub 429 n y C4 C4A TMQ sing 430 n y C4 N25 TMQ sing 431 n n C3A C4A TMQ doub 432 n y C3A C8 TMQ sing 433 n y C4A C5 TMQ sing 434 n y C5 C6 TMQ doub 435 n y C5 C17 TMQ sing 436 n n C6 C7 TMQ sing 437 n y C6 C9 TMQ sing 438 n n C7 C8 TMQ doub 439 n y C7 H7 TMQ sing 440 n n C8 H8 TMQ sing 441 n n C9 N10 TMQ sing 442 n n C9 H91 TMQ sing 443 n n C9 H92 TMQ sing 444 n n N10 C11 TMQ sing 445 n n N10 HN1 TMQ sing 446 n n C11 C12 TMQ doub 447 n y C11 C16 TMQ sing 448 n y C12 C13 TMQ sing 449 n y C12 H12 TMQ sing 450 n n C13 C14 TMQ doub 451 n y C13 O18 TMQ sing 452 n n C14 C15 TMQ sing 453 n y C14 O19 TMQ sing 454 n n C15 C16 TMQ doub 455 n y C15 O20 TMQ sing 456 n n C16 H16 TMQ sing 457 n n C17 H171 TMQ sing 458 n n C17 H172 TMQ sing 459 n n C17 H173 TMQ sing 460 n n O18 C21 TMQ sing 461 n n O19 C22 TMQ sing 462 n n O20 C23 TMQ sing 463 n n C21 H211 TMQ sing 464 n n C21 H212 TMQ sing 465 n n C21 H213 TMQ sing 466 n n C22 H221 TMQ sing 467 n n C22 H222 TMQ sing 468 n n C22 H223 TMQ sing 469 n n C23 H231 TMQ sing 470 n n C23 H232 TMQ sing 471 n n C23 H233 TMQ sing 472 n n N24 HN21 TMQ sing 473 n n N24 HN22 TMQ sing 474 n n N25 HN51 TMQ sing 475 n n N25 HN52 TMQ sing 476 n n # _atom_sites.entry_id 4XT8 _atom_sites.fract_transf_matrix[1][1] 0.014411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 259 NAP NAP . C 3 TMQ A 1 302 260 TMQ TMQ . D 4 PEG A 1 303 261 PEG DEG . E 5 GOL A 1 304 262 GOL GOL . F 4 PEG A 1 305 263 PEG DEG . G 6 EDO A 1 306 264 EDO EDO . H 6 EDO A 1 307 265 EDO EDO . I 7 HOH A 1 401 34 HOH HOH . I 7 HOH A 2 402 9 HOH HOH . I 7 HOH A 3 403 109 HOH HOH . I 7 HOH A 4 404 13 HOH HOH . I 7 HOH A 5 405 15 HOH HOH . I 7 HOH A 6 406 115 HOH HOH . I 7 HOH A 7 407 22 HOH HOH . I 7 HOH A 8 408 5 HOH HOH . I 7 HOH A 9 409 113 HOH HOH . I 7 HOH A 10 410 56 HOH HOH . I 7 HOH A 11 411 35 HOH HOH . I 7 HOH A 12 412 53 HOH HOH . I 7 HOH A 13 413 20 HOH HOH . I 7 HOH A 14 414 66 HOH HOH . I 7 HOH A 15 415 63 HOH HOH . I 7 HOH A 16 416 30 HOH HOH . I 7 HOH A 17 417 38 HOH HOH . I 7 HOH A 18 418 41 HOH HOH . I 7 HOH A 19 419 110 HOH HOH . I 7 HOH A 20 420 111 HOH HOH . I 7 HOH A 21 421 23 HOH HOH . I 7 HOH A 22 422 104 HOH HOH . I 7 HOH A 23 423 70 HOH HOH . I 7 HOH A 24 424 16 HOH HOH . I 7 HOH A 25 425 36 HOH HOH . I 7 HOH A 26 426 112 HOH HOH . I 7 HOH A 27 427 17 HOH HOH . I 7 HOH A 28 428 100 HOH HOH . I 7 HOH A 29 429 21 HOH HOH . I 7 HOH A 30 430 18 HOH HOH . I 7 HOH A 31 431 1 HOH HOH . I 7 HOH A 32 432 2 HOH HOH . I 7 HOH A 33 433 3 HOH HOH . I 7 HOH A 34 434 4 HOH HOH . I 7 HOH A 35 435 7 HOH HOH . I 7 HOH A 36 436 8 HOH HOH . I 7 HOH A 37 437 10 HOH HOH . I 7 HOH A 38 438 11 HOH HOH . I 7 HOH A 39 439 14 HOH HOH . I 7 HOH A 40 440 24 HOH HOH . I 7 HOH A 41 441 26 HOH HOH . I 7 HOH A 42 442 27 HOH HOH . I 7 HOH A 43 443 28 HOH HOH . I 7 HOH A 44 444 31 HOH HOH . I 7 HOH A 45 445 32 HOH HOH . I 7 HOH A 46 446 39 HOH HOH . I 7 HOH A 47 447 43 HOH HOH . I 7 HOH A 48 448 44 HOH HOH . I 7 HOH A 49 449 47 HOH HOH . I 7 HOH A 50 450 48 HOH HOH . I 7 HOH A 51 451 51 HOH HOH . I 7 HOH A 52 452 52 HOH HOH . I 7 HOH A 53 453 54 HOH HOH . I 7 HOH A 54 454 55 HOH HOH . I 7 HOH A 55 455 57 HOH HOH . I 7 HOH A 56 456 58 HOH HOH . I 7 HOH A 57 457 60 HOH HOH . I 7 HOH A 58 458 62 HOH HOH . I 7 HOH A 59 459 65 HOH HOH . I 7 HOH A 60 460 67 HOH HOH . I 7 HOH A 61 461 68 HOH HOH . I 7 HOH A 62 462 69 HOH HOH . I 7 HOH A 63 463 71 HOH HOH . I 7 HOH A 64 464 72 HOH HOH . I 7 HOH A 65 465 73 HOH HOH . I 7 HOH A 66 466 75 HOH HOH . I 7 HOH A 67 467 76 HOH HOH . I 7 HOH A 68 468 78 HOH HOH . I 7 HOH A 69 469 80 HOH HOH . I 7 HOH A 70 470 81 HOH HOH . I 7 HOH A 71 471 82 HOH HOH . I 7 HOH A 72 472 84 HOH HOH . I 7 HOH A 73 473 86 HOH HOH . I 7 HOH A 74 474 87 HOH HOH . I 7 HOH A 75 475 92 HOH HOH . I 7 HOH A 76 476 94 HOH HOH . I 7 HOH A 77 477 95 HOH HOH . I 7 HOH A 78 478 96 HOH HOH . I 7 HOH A 79 479 97 HOH HOH . I 7 HOH A 80 480 106 HOH HOH . I 7 HOH A 81 481 107 HOH HOH . I 7 HOH A 82 482 108 HOH HOH . I 7 HOH A 83 483 114 HOH HOH . I 7 HOH A 84 484 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TMQ . . . C 3 21.789 28.662 20.939 1 15.75 ? N1 TMQ 302 A 1 HETATM 2 C C2 TMQ . . . C 3 22.18 28.81 19.677 1 13.83 ? C2 TMQ 302 A 1 HETATM 3 N N3 TMQ . . . C 3 21.956 27.91 18.658 1 13.49 ? N3 TMQ 302 A 1 HETATM 4 C C4 TMQ . . . C 3 21.258 26.781 18.977 1 14.45 ? C4 TMQ 302 A 1 HETATM 5 C C3A TMQ . . . C 3 21.094 27.526 21.218 1 14.77 ? C3A TMQ 302 A 1 HETATM 6 C C4A TMQ . . . C 3 20.755 26.498 20.313 1 18.31 ? C4A TMQ 302 A 1 HETATM 7 C C5 TMQ . . . C 3 20.026 25.374 20.812 1 19.25 ? C5 TMQ 302 A 1 HETATM 8 C C6 TMQ . . . C 3 19.647 25.292 22.159 1 23.19 ? C6 TMQ 302 A 1 HETATM 9 C C7 TMQ . . . C 3 20.004 26.353 23.009 1 20.08 ? C7 TMQ 302 A 1 HETATM 10 C C8 TMQ . . . C 3 20.696 27.421 22.569 1 18.89 ? C8 TMQ 302 A 1 HETATM 11 C C9 TMQ . . . C 3 18.88 24.109 22.716 1 33.41 ? C9 TMQ 302 A 1 HETATM 12 N N10 TMQ . . . C 3 17.567 23.774 22.254 1 39.05 ? N10 TMQ 302 A 1 HETATM 13 C C11 TMQ . . . C 3 16.485 24.637 22.394 1 37.86 ? C11 TMQ 302 A 1 HETATM 14 C C12 TMQ . . . C 3 16.558 25.907 23.007 1 28.52 ? C12 TMQ 302 A 1 HETATM 15 C C13 TMQ . . . C 3 15.41 26.714 23.095 1 38.42 ? C13 TMQ 302 A 1 HETATM 16 C C14 TMQ . . . C 3 14.166 26.289 22.594 1 43.37 ? C14 TMQ 302 A 1 HETATM 17 C C15 TMQ . . . C 3 14.125 25.012 21.999 1 41.12 ? C15 TMQ 302 A 1 HETATM 18 C C16 TMQ . . . C 3 15.245 24.212 21.901 1 34.78 ? C16 TMQ 302 A 1 HETATM 19 C C17 TMQ . . . C 3 19.674 24.269 19.874 1 25.61 ? C17 TMQ 302 A 1 HETATM 20 O O18 TMQ . . . C 3 15.521 27.952 23.697 1 29.26 ? O18 TMQ 302 A 1 HETATM 21 O O19 TMQ . . . C 3 13.054 27.093 22.711 1 44.4 ? O19 TMQ 302 A 1 HETATM 22 O O20 TMQ . . . C 3 12.936 24.602 21.515 1 35.87 ? O20 TMQ 302 A 1 HETATM 23 C C21 TMQ . . . C 3 16.661 28.733 23.387 1 23.35 ? C21 TMQ 302 A 1 HETATM 24 C C22 TMQ . . . C 3 12.651 27.814 21.575 1 39.01 ? C22 TMQ 302 A 1 HETATM 25 C C23 TMQ . . . C 3 12.043 24.095 22.45 1 53.24 ? C23 TMQ 302 A 1 HETATM 26 N N24 TMQ . . . C 3 22.872 29.955 19.356 1 13.16 ? N24 TMQ 302 A 1 HETATM 27 N N25 TMQ . . . C 3 21.099 25.98 17.867 1 14.13 ? N25 TMQ 302 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #