data_4XT8 # _model_server_result.job_id KM7jjWKz8bUCTi2Zi8Vobg _model_server_result.datetime_utc '2024-11-02 03:24:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 4XT8 # _exptl.entry_id 4XT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XT8 _cell.length_a 69.391 _cell.length_b 93.612 _cell.length_c 74.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 69.391 0 37.16 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 4XT8 _atom_sites.fract_transf_matrix[1][1] 0.014411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 259 NAP NAP . C 3 TMQ A 1 302 260 TMQ TMQ . D 4 PEG A 1 303 261 PEG DEG . E 5 GOL A 1 304 262 GOL GOL . F 4 PEG A 1 305 263 PEG DEG . G 6 EDO A 1 306 264 EDO EDO . H 6 EDO A 1 307 265 EDO EDO . I 7 HOH A 1 401 34 HOH HOH . I 7 HOH A 2 402 9 HOH HOH . I 7 HOH A 3 403 109 HOH HOH . I 7 HOH A 4 404 13 HOH HOH . I 7 HOH A 5 405 15 HOH HOH . I 7 HOH A 6 406 115 HOH HOH . I 7 HOH A 7 407 22 HOH HOH . I 7 HOH A 8 408 5 HOH HOH . I 7 HOH A 9 409 113 HOH HOH . I 7 HOH A 10 410 56 HOH HOH . I 7 HOH A 11 411 35 HOH HOH . I 7 HOH A 12 412 53 HOH HOH . I 7 HOH A 13 413 20 HOH HOH . I 7 HOH A 14 414 66 HOH HOH . I 7 HOH A 15 415 63 HOH HOH . I 7 HOH A 16 416 30 HOH HOH . I 7 HOH A 17 417 38 HOH HOH . I 7 HOH A 18 418 41 HOH HOH . I 7 HOH A 19 419 110 HOH HOH . I 7 HOH A 20 420 111 HOH HOH . I 7 HOH A 21 421 23 HOH HOH . I 7 HOH A 22 422 104 HOH HOH . I 7 HOH A 23 423 70 HOH HOH . I 7 HOH A 24 424 16 HOH HOH . I 7 HOH A 25 425 36 HOH HOH . I 7 HOH A 26 426 112 HOH HOH . I 7 HOH A 27 427 17 HOH HOH . I 7 HOH A 28 428 100 HOH HOH . I 7 HOH A 29 429 21 HOH HOH . I 7 HOH A 30 430 18 HOH HOH . I 7 HOH A 31 431 1 HOH HOH . I 7 HOH A 32 432 2 HOH HOH . I 7 HOH A 33 433 3 HOH HOH . I 7 HOH A 34 434 4 HOH HOH . I 7 HOH A 35 435 7 HOH HOH . I 7 HOH A 36 436 8 HOH HOH . I 7 HOH A 37 437 10 HOH HOH . I 7 HOH A 38 438 11 HOH HOH . I 7 HOH A 39 439 14 HOH HOH . I 7 HOH A 40 440 24 HOH HOH . I 7 HOH A 41 441 26 HOH HOH . I 7 HOH A 42 442 27 HOH HOH . I 7 HOH A 43 443 28 HOH HOH . I 7 HOH A 44 444 31 HOH HOH . I 7 HOH A 45 445 32 HOH HOH . I 7 HOH A 46 446 39 HOH HOH . I 7 HOH A 47 447 43 HOH HOH . I 7 HOH A 48 448 44 HOH HOH . I 7 HOH A 49 449 47 HOH HOH . I 7 HOH A 50 450 48 HOH HOH . I 7 HOH A 51 451 51 HOH HOH . I 7 HOH A 52 452 52 HOH HOH . I 7 HOH A 53 453 54 HOH HOH . I 7 HOH A 54 454 55 HOH HOH . I 7 HOH A 55 455 57 HOH HOH . I 7 HOH A 56 456 58 HOH HOH . I 7 HOH A 57 457 60 HOH HOH . I 7 HOH A 58 458 62 HOH HOH . I 7 HOH A 59 459 65 HOH HOH . I 7 HOH A 60 460 67 HOH HOH . I 7 HOH A 61 461 68 HOH HOH . I 7 HOH A 62 462 69 HOH HOH . I 7 HOH A 63 463 71 HOH HOH . I 7 HOH A 64 464 72 HOH HOH . I 7 HOH A 65 465 73 HOH HOH . I 7 HOH A 66 466 75 HOH HOH . I 7 HOH A 67 467 76 HOH HOH . I 7 HOH A 68 468 78 HOH HOH . I 7 HOH A 69 469 80 HOH HOH . I 7 HOH A 70 470 81 HOH HOH . I 7 HOH A 71 471 82 HOH HOH . I 7 HOH A 72 472 84 HOH HOH . I 7 HOH A 73 473 86 HOH HOH . I 7 HOH A 74 474 87 HOH HOH . I 7 HOH A 75 475 92 HOH HOH . I 7 HOH A 76 476 94 HOH HOH . I 7 HOH A 77 477 95 HOH HOH . I 7 HOH A 78 478 96 HOH HOH . I 7 HOH A 79 479 97 HOH HOH . I 7 HOH A 80 480 106 HOH HOH . I 7 HOH A 81 481 107 HOH HOH . I 7 HOH A 82 482 108 HOH HOH . I 7 HOH A 83 483 114 HOH HOH . I 7 HOH A 84 484 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 24.046 29.995 30.5 1 26.2 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . E 5 25.302 29.357 30.417 1 25.22 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . E 5 23.576 29.989 31.947 1 28.13 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . E 5 24.449 30.819 32.684 1 27.1 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . E 5 22.133 30.5 32.032 1 27.99 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . E 5 22.117 31.912 32.006 1 35.34 ? O3 GOL 304 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #