data_4XTL
#
_model_server_result.job_id            suc6yeSE1VPsuALw0vS4WQ 
_model_server_result.datetime_utc      '2024-11-21 18:27:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xtl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"LA","auth_seq_id":337}' 
#
_entry.id    4XTL 
#
_exptl.entry_id    4XTL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XTL 
_cell.length_a            40.18 
_cell.length_b            80.84 
_cell.length_c            232.84 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XTL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 KA N N 
? 4 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 254 A SER 254 1_555 A N LYR 255 A LYR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C LYR 255 A LYR 255 1_555 A N VAL 256 A VAL 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 A OH TYR 25 A TYR 25 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc2 A O THR 83 A THR 83 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc3 A O PHE 86 A PHE 86 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc4 B NA NA . A NA 301 1_555 MA O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc5 B NA NA . A NA 301 1_555 MA O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc6 B NA NA . A NA 301 1_555 MA O HOH . A HOH 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     4XTL 
_atom_sites.fract_transf_matrix[1][1]    0.024888 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01237 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004295 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 301 101 NA NA . 
C 3 LFA A 1 302 1 LFA LFA . 
D 3 LFA A 1 303 3 LFA LFA . 
E 3 LFA A 1 304 4 LFA LFA . 
F 3 LFA A 1 305 10 LFA LFA . 
G 3 LFA A 1 306 11 LFA LFA . 
H 3 LFA A 1 307 13 LFA LFA . 
I 3 LFA A 1 308 14 LFA LFA . 
J 3 LFA A 1 309 15 LFA LFA . 
K 3 LFA A 1 310 17 LFA LFA . 
L 3 LFA A 1 311 18 LFA LFA . 
M 3 LFA A 1 312 19 LFA LFA . 
N 3 LFA A 1 313 20 LFA LFA . 
O 3 LFA A 1 314 21 LFA LFA . 
P 3 LFA A 1 315 24 LFA LFA . 
Q 3 LFA A 1 316 25 LFA LFA . 
R 3 LFA A 1 317 26 LFA LFA . 
S 3 LFA A 1 318 27 LFA LFA . 
T 3 LFA A 1 319 28 LFA LFA . 
U 3 LFA A 1 320 30 LFA LFA . 
V 3 LFA A 1 321 31 LFA LFA . 
W 3 LFA A 1 322 32 LFA LFA . 
X 3 LFA A 1 323 34 LFA LFA . 
Y 3 LFA A 1 324 35 LFA LFA . 
Z 3 LFA A 1 325 36 LFA LFA . 
AA 3 LFA A 1 326 37 LFA LFA . 
BA 3 LFA A 1 327 38 LFA LFA . 
CA 3 LFA A 1 328 39 LFA LFA . 
DA 3 LFA A 1 329 41 LFA LFA . 
EA 3 LFA A 1 330 42 LFA LFA . 
FA 3 LFA A 1 331 43 LFA LFA . 
GA 3 LFA A 1 332 44 LFA LFA . 
HA 3 LFA A 1 333 45 LFA LFA . 
IA 3 LFA A 1 334 46 LFA LFA . 
JA 3 LFA A 1 335 47 LFA LFA . 
KA 4 GOL A 1 336 1 GOL GOL . 
LA 4 GOL A 1 337 2 GOL GOL . 
MA 5 HOH A 1 401 137 HOH HOH . 
MA 5 HOH A 2 402 114 HOH HOH . 
MA 5 HOH A 3 403 31 HOH HOH . 
MA 5 HOH A 4 404 142 HOH HOH . 
MA 5 HOH A 5 405 58 HOH HOH . 
MA 5 HOH A 6 406 159 HOH HOH . 
MA 5 HOH A 7 407 17 HOH HOH . 
MA 5 HOH A 8 408 11 HOH HOH . 
MA 5 HOH A 9 409 130 HOH HOH . 
MA 5 HOH A 10 410 171 HOH HOH . 
MA 5 HOH A 11 411 110 HOH HOH . 
MA 5 HOH A 12 412 104 HOH HOH . 
MA 5 HOH A 13 413 59 HOH HOH . 
MA 5 HOH A 14 414 101 HOH HOH . 
MA 5 HOH A 15 415 180 HOH HOH . 
MA 5 HOH A 16 416 56 HOH HOH . 
MA 5 HOH A 17 417 173 HOH HOH . 
MA 5 HOH A 18 418 20 HOH HOH . 
MA 5 HOH A 19 419 30 HOH HOH . 
MA 5 HOH A 20 420 50 HOH HOH . 
MA 5 HOH A 21 421 34 HOH HOH . 
MA 5 HOH A 22 422 16 HOH HOH . 
MA 5 HOH A 23 423 41 HOH HOH . 
MA 5 HOH A 24 424 42 HOH HOH . 
MA 5 HOH A 25 425 21 HOH HOH . 
MA 5 HOH A 26 426 172 HOH HOH . 
MA 5 HOH A 27 427 170 HOH HOH . 
MA 5 HOH A 28 428 106 HOH HOH . 
MA 5 HOH A 29 429 175 HOH HOH . 
MA 5 HOH A 30 430 184 HOH HOH . 
MA 5 HOH A 31 431 179 HOH HOH . 
MA 5 HOH A 32 432 139 HOH HOH . 
MA 5 HOH A 33 433 19 HOH HOH . 
MA 5 HOH A 34 434 1 HOH HOH . 
MA 5 HOH A 35 435 2 HOH HOH . 
MA 5 HOH A 36 436 3 HOH HOH . 
MA 5 HOH A 37 437 4 HOH HOH . 
MA 5 HOH A 38 438 5 HOH HOH . 
MA 5 HOH A 39 439 6 HOH HOH . 
MA 5 HOH A 40 440 7 HOH HOH . 
MA 5 HOH A 41 441 8 HOH HOH . 
MA 5 HOH A 42 442 9 HOH HOH . 
MA 5 HOH A 43 443 10 HOH HOH . 
MA 5 HOH A 44 444 12 HOH HOH . 
MA 5 HOH A 45 445 13 HOH HOH . 
MA 5 HOH A 46 446 14 HOH HOH . 
MA 5 HOH A 47 447 15 HOH HOH . 
MA 5 HOH A 48 448 18 HOH HOH . 
MA 5 HOH A 49 449 22 HOH HOH . 
MA 5 HOH A 50 450 24 HOH HOH . 
MA 5 HOH A 51 451 25 HOH HOH . 
MA 5 HOH A 52 452 26 HOH HOH . 
MA 5 HOH A 53 453 27 HOH HOH . 
MA 5 HOH A 54 454 28 HOH HOH . 
MA 5 HOH A 55 455 29 HOH HOH . 
MA 5 HOH A 56 456 32 HOH HOH . 
MA 5 HOH A 57 457 33 HOH HOH . 
MA 5 HOH A 58 458 35 HOH HOH . 
MA 5 HOH A 59 459 36 HOH HOH . 
MA 5 HOH A 60 460 37 HOH HOH . 
MA 5 HOH A 61 461 38 HOH HOH . 
MA 5 HOH A 62 462 39 HOH HOH . 
MA 5 HOH A 63 463 40 HOH HOH . 
MA 5 HOH A 64 464 43 HOH HOH . 
MA 5 HOH A 65 465 44 HOH HOH . 
MA 5 HOH A 66 466 45 HOH HOH . 
MA 5 HOH A 67 467 46 HOH HOH . 
MA 5 HOH A 68 468 47 HOH HOH . 
MA 5 HOH A 69 469 48 HOH HOH . 
MA 5 HOH A 70 470 49 HOH HOH . 
MA 5 HOH A 71 471 51 HOH HOH . 
MA 5 HOH A 72 472 52 HOH HOH . 
MA 5 HOH A 73 473 53 HOH HOH . 
MA 5 HOH A 74 474 54 HOH HOH . 
MA 5 HOH A 75 475 55 HOH HOH . 
MA 5 HOH A 76 476 57 HOH HOH . 
MA 5 HOH A 77 477 102 HOH HOH . 
MA 5 HOH A 78 478 103 HOH HOH . 
MA 5 HOH A 79 479 105 HOH HOH . 
MA 5 HOH A 80 480 107 HOH HOH . 
MA 5 HOH A 81 481 108 HOH HOH . 
MA 5 HOH A 82 482 109 HOH HOH . 
MA 5 HOH A 83 483 111 HOH HOH . 
MA 5 HOH A 84 484 112 HOH HOH . 
MA 5 HOH A 85 485 113 HOH HOH . 
MA 5 HOH A 86 486 115 HOH HOH . 
MA 5 HOH A 87 487 116 HOH HOH . 
MA 5 HOH A 88 488 117 HOH HOH . 
MA 5 HOH A 89 489 118 HOH HOH . 
MA 5 HOH A 90 490 119 HOH HOH . 
MA 5 HOH A 91 491 120 HOH HOH . 
MA 5 HOH A 92 492 121 HOH HOH . 
MA 5 HOH A 93 493 122 HOH HOH . 
MA 5 HOH A 94 494 123 HOH HOH . 
MA 5 HOH A 95 495 124 HOH HOH . 
MA 5 HOH A 96 496 125 HOH HOH . 
MA 5 HOH A 97 497 126 HOH HOH . 
MA 5 HOH A 98 498 127 HOH HOH . 
MA 5 HOH A 99 499 128 HOH HOH . 
MA 5 HOH A 100 500 129 HOH HOH . 
MA 5 HOH A 101 501 131 HOH HOH . 
MA 5 HOH A 102 502 132 HOH HOH . 
MA 5 HOH A 103 503 133 HOH HOH . 
MA 5 HOH A 104 504 135 HOH HOH . 
MA 5 HOH A 105 505 136 HOH HOH . 
MA 5 HOH A 106 506 138 HOH HOH . 
MA 5 HOH A 107 507 140 HOH HOH . 
MA 5 HOH A 108 508 141 HOH HOH . 
MA 5 HOH A 109 509 143 HOH HOH . 
MA 5 HOH A 110 510 144 HOH HOH . 
MA 5 HOH A 111 511 145 HOH HOH . 
MA 5 HOH A 112 512 146 HOH HOH . 
MA 5 HOH A 113 513 147 HOH HOH . 
MA 5 HOH A 114 514 148 HOH HOH . 
MA 5 HOH A 115 515 149 HOH HOH . 
MA 5 HOH A 116 516 150 HOH HOH . 
MA 5 HOH A 117 517 151 HOH HOH . 
MA 5 HOH A 118 518 152 HOH HOH . 
MA 5 HOH A 119 519 153 HOH HOH . 
MA 5 HOH A 120 520 154 HOH HOH . 
MA 5 HOH A 121 521 155 HOH HOH . 
MA 5 HOH A 122 522 156 HOH HOH . 
MA 5 HOH A 123 523 157 HOH HOH . 
MA 5 HOH A 124 524 158 HOH HOH . 
MA 5 HOH A 125 525 160 HOH HOH . 
MA 5 HOH A 126 526 161 HOH HOH . 
MA 5 HOH A 127 527 162 HOH HOH . 
MA 5 HOH A 128 528 163 HOH HOH . 
MA 5 HOH A 129 529 164 HOH HOH . 
MA 5 HOH A 130 530 165 HOH HOH . 
MA 5 HOH A 131 531 166 HOH HOH . 
MA 5 HOH A 132 532 167 HOH HOH . 
MA 5 HOH A 133 533 168 HOH HOH . 
MA 5 HOH A 134 534 169 HOH HOH . 
MA 5 HOH A 135 535 174 HOH HOH . 
MA 5 HOH A 136 536 176 HOH HOH . 
MA 5 HOH A 137 537 177 HOH HOH . 
MA 5 HOH A 138 538 178 HOH HOH . 
MA 5 HOH A 139 539 181 HOH HOH . 
MA 5 HOH A 140 540 182 HOH HOH . 
MA 5 HOH A 141 541 183 HOH HOH . 
MA 5 HOH A 142 542 185 HOH HOH . 
MA 5 HOH A 143 543 186 HOH HOH . 
MA 5 HOH A 144 544 187 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . LA 4 15.068 7.836 40.768 1 84.28 ? C1 GOL 337 A 1 
HETATM 2 O O1 GOL . . . LA 4 14.833 7.61 39.372 1 92 ? O1 GOL 337 A 1 
HETATM 3 C C2 GOL . . . LA 4 16.536 8.186 41 1 76.84 ? C2 GOL 337 A 1 
HETATM 4 O O2 GOL . . . LA 4 17.366 7.328 40.207 1 70.46 ? O2 GOL 337 A 1 
HETATM 5 C C3 GOL . . . LA 4 16.881 8.046 42.483 1 75.53 ? C3 GOL 337 A 1 
HETATM 6 O O3 GOL . . . LA 4 18.088 7.293 42.664 1 81.28 ? O3 GOL 337 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#