data_4XTO
#
_model_server_result.job_id            CkZ0DAmKpMrGwOjyN612VA 
_model_server_result.datetime_utc      '2024-11-27 09:05:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xto 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    4XTO 
#
_exptl.entry_id    4XTO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XTO 
_cell.length_a            127.1 
_cell.length_b            238.98 
_cell.length_c            132.48 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XTO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 I N N 
? 2 M N N 
? 2 P N N 
? 2 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 254 A SER 254 1_555 A N LYR 255 A LYR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C LYR 255 A LYR 255 1_555 A N VAL 256 A VAL 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 B C SER 254 B SER 254 1_555 B N LYR 255 B LYR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C LYR 255 B LYR 255 1_555 B N VAL 256 B VAL 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 C C SER 254 C SER 254 1_555 C N LYR 255 C LYR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 C C LYR 255 C LYR 255 1_555 C N VAL 256 C VAL 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 D C SER 254 D SER 254 1_555 D N LYR 255 D LYR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale8 D C LYR 255 D LYR 255 1_555 D N VAL 256 D VAL 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 E C SER 254 E SER 254 1_555 E N LYR 255 E LYR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale10 E C LYR 255 E LYR 255 1_555 E N VAL 256 E VAL 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A OH TYR 25 A TYR 25 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc2 A O THR 83 A THR 83 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc3 A O PHE 86 A PHE 86 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc4 A OD1 ASP 102 A ASP 102 1_555 S NA NA . E NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? 
metalc ? metalc5 F NA NA . A NA 301 1_555 B OD1 ASP 102 B ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc6 F NA NA . A NA 301 1_555 B OD2 ASP 102 B ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
metalc ? metalc7 B OH TYR 25 B TYR 25 1_555 I NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? 
metalc ? metalc8 B O THR 83 B THR 83 1_555 I NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc9 B O PHE 86 B PHE 86 1_555 I NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc10 I NA NA . B NA 301 1_555 C OD1 ASP 102 C ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? 
metalc ? metalc11 I NA NA . B NA 301 1_555 C OD2 ASP 102 C ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? 
metalc ? metalc12 C OH TYR 25 C TYR 25 1_555 M NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? 
metalc ? metalc13 C O THR 83 C THR 83 1_555 M NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc14 C O PHE 86 C PHE 86 1_555 M NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc15 M NA NA . C NA 301 1_555 D OD1 ASP 102 D ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc16 M NA NA . C NA 301 1_555 D OD2 ASP 102 D ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.19 ? 
metalc ? metalc17 D OH TYR 25 D TYR 25 1_555 P NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? 
metalc ? metalc18 D O THR 83 D THR 83 1_555 P NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc19 D O PHE 86 D PHE 86 1_555 P NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc20 P NA NA . D NA 301 1_555 E OD1 ASP 102 E ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc21 P NA NA . D NA 301 1_555 E OD2 ASP 102 E ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? 
metalc ? metalc22 E OH TYR 25 E TYR 25 1_555 S NA NA . E NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? 
metalc ? metalc23 E O THR 83 E THR 83 1_555 S NA NA . E NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc24 E O PHE 86 E PHE 86 1_555 S NA NA . E NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4XTO 
_atom_sites.fract_transf_matrix[1][1]    0.007868 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004184 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007548 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NA A 1 301 1 NA NA . 
G 3 LFA A 1 302 1 LFA LFA . 
H 3 LFA A 1 303 2 LFA LFA . 
I 2 NA B 1 301 2 NA NA . 
J 3 LFA B 1 302 3 LFA LFA . 
K 3 LFA B 1 303 7 LFA LFA . 
L 3 LFA B 1 304 8 LFA LFA . 
M 2 NA C 1 301 3 NA NA . 
N 3 LFA C 1 302 4 LFA LFA . 
O 3 LFA C 1 303 9 LFA LFA . 
P 2 NA D 1 301 4 NA NA . 
Q 3 LFA D 1 302 5 LFA LFA . 
R 3 LFA D 1 303 10 LFA LFA . 
S 2 NA E 1 301 5 NA NA . 
T 3 LFA E 1 302 6 LFA LFA . 
U 4 HOH A 1 401 3 HOH HOH . 
U 4 HOH A 2 402 10 HOH HOH . 
U 4 HOH A 3 403 11 HOH HOH . 
V 4 HOH B 1 401 2 HOH HOH . 
V 4 HOH B 2 402 4 HOH HOH . 
V 4 HOH B 3 403 12 HOH HOH . 
W 4 HOH C 1 401 1 HOH HOH . 
W 4 HOH C 2 402 5 HOH HOH . 
W 4 HOH C 3 403 13 HOH HOH . 
X 4 HOH D 1 401 6 HOH HOH . 
X 4 HOH D 2 402 7 HOH HOH . 
X 4 HOH D 3 403 14 HOH HOH . 
Y 4 HOH E 1 401 8 HOH HOH . 
Y 4 HOH E 2 402 9 HOH HOH . 
Y 4 HOH E 3 403 15 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         M 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -27.706 
_atom_site.Cartn_y               -13.156 
_atom_site.Cartn_z               -11.414 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        116.26 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#