data_4XTO # _model_server_result.job_id 0D3Ad2dxORk73UQTWC2TfA _model_server_result.datetime_utc '2024-11-05 04:33:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xto # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":303}' # _entry.id 4XTO # _exptl.entry_id 4XTO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XTO _cell.length_a 127.1 _cell.length_b 238.98 _cell.length_c 132.48 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XTO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 N N N ? 3 O N N ? 3 Q N N ? 3 R N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 254 A SER 254 1_555 A N LYR 255 A LYR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C LYR 255 A LYR 255 1_555 A N VAL 256 A VAL 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C SER 254 B SER 254 1_555 B N LYR 255 B LYR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C LYR 255 B LYR 255 1_555 B N VAL 256 B VAL 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C SER 254 C SER 254 1_555 C N LYR 255 C LYR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 C C LYR 255 C LYR 255 1_555 C N VAL 256 C VAL 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 D C SER 254 D SER 254 1_555 D N LYR 255 D LYR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 D C LYR 255 D LYR 255 1_555 D N VAL 256 D VAL 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 E C SER 254 E SER 254 1_555 E N LYR 255 E LYR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 E C LYR 255 E LYR 255 1_555 E N VAL 256 E VAL 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OH TYR 25 A TYR 25 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc2 A O THR 83 A THR 83 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 A O PHE 86 A PHE 86 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc4 A OD1 ASP 102 A ASP 102 1_555 S NA NA . E NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc5 F NA NA . A NA 301 1_555 B OD1 ASP 102 B ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc6 F NA NA . A NA 301 1_555 B OD2 ASP 102 B ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc7 B OH TYR 25 B TYR 25 1_555 I NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc8 B O THR 83 B THR 83 1_555 I NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc9 B O PHE 86 B PHE 86 1_555 I NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc10 I NA NA . B NA 301 1_555 C OD1 ASP 102 C ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc11 I NA NA . B NA 301 1_555 C OD2 ASP 102 C ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? metalc ? metalc12 C OH TYR 25 C TYR 25 1_555 M NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc13 C O THR 83 C THR 83 1_555 M NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc14 C O PHE 86 C PHE 86 1_555 M NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc15 M NA NA . C NA 301 1_555 D OD1 ASP 102 D ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc16 M NA NA . C NA 301 1_555 D OD2 ASP 102 D ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.19 ? metalc ? metalc17 D OH TYR 25 D TYR 25 1_555 P NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc18 D O THR 83 D THR 83 1_555 P NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc19 D O PHE 86 D PHE 86 1_555 P NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc20 P NA NA . D NA 301 1_555 E OD1 ASP 102 E ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc21 P NA NA . D NA 301 1_555 E OD2 ASP 102 E ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc22 E OH TYR 25 E TYR 25 1_555 S NA NA . E NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc23 E O THR 83 E THR 83 1_555 S NA NA . E NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc24 E O PHE 86 E PHE 86 1_555 S NA NA . E NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 181 n n C1 H11 LFA sing 182 n n C1 H12 LFA sing 183 n n C1 H13 LFA sing 184 n n C2 C3 LFA sing 185 n n C2 H21 LFA sing 186 n n C2 H22 LFA sing 187 n n C3 C4 LFA sing 188 n n C3 H31 LFA sing 189 n n C3 H32 LFA sing 190 n n C4 C5 LFA sing 191 n n C4 H41 LFA sing 192 n n C4 H42 LFA sing 193 n n C5 C6 LFA sing 194 n n C5 H51 LFA sing 195 n n C5 H52 LFA sing 196 n n C6 C7 LFA sing 197 n n C6 H61 LFA sing 198 n n C6 H62 LFA sing 199 n n C7 C8 LFA sing 200 n n C7 H71 LFA sing 201 n n C7 H72 LFA sing 202 n n C8 C9 LFA sing 203 n n C8 H81 LFA sing 204 n n C8 H82 LFA sing 205 n n C9 C10 LFA sing 206 n n C9 H91 LFA sing 207 n n C9 H92 LFA sing 208 n n C10 C11 LFA sing 209 n n C10 H101 LFA sing 210 n n C10 H102 LFA sing 211 n n C11 C12 LFA sing 212 n n C11 H111 LFA sing 213 n n C11 H112 LFA sing 214 n n C12 C13 LFA sing 215 n n C12 H121 LFA sing 216 n n C12 H122 LFA sing 217 n n C13 C14 LFA sing 218 n n C13 H131 LFA sing 219 n n C13 H132 LFA sing 220 n n C14 C15 LFA sing 221 n n C14 H141 LFA sing 222 n n C14 H142 LFA sing 223 n n C15 C16 LFA sing 224 n n C15 H151 LFA sing 225 n n C15 H152 LFA sing 226 n n C16 C17 LFA sing 227 n n C16 H161 LFA sing 228 n n C16 H162 LFA sing 229 n n C17 C18 LFA sing 230 n n C17 H171 LFA sing 231 n n C17 H172 LFA sing 232 n n C18 C19 LFA sing 233 n n C18 H181 LFA sing 234 n n C18 H182 LFA sing 235 n n C19 C20 LFA sing 236 n n C19 H191 LFA sing 237 n n C19 H192 LFA sing 238 n n C20 H201 LFA sing 239 n n C20 H202 LFA sing 240 n n C20 H203 LFA sing 241 n n # _atom_sites.entry_id 4XTO _atom_sites.fract_transf_matrix[1][1] 0.007868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NA A 1 301 1 NA NA . G 3 LFA A 1 302 1 LFA LFA . H 3 LFA A 1 303 2 LFA LFA . I 2 NA B 1 301 2 NA NA . J 3 LFA B 1 302 3 LFA LFA . K 3 LFA B 1 303 7 LFA LFA . L 3 LFA B 1 304 8 LFA LFA . M 2 NA C 1 301 3 NA NA . N 3 LFA C 1 302 4 LFA LFA . O 3 LFA C 1 303 9 LFA LFA . P 2 NA D 1 301 4 NA NA . Q 3 LFA D 1 302 5 LFA LFA . R 3 LFA D 1 303 10 LFA LFA . S 2 NA E 1 301 5 NA NA . T 3 LFA E 1 302 6 LFA LFA . U 4 HOH A 1 401 3 HOH HOH . U 4 HOH A 2 402 10 HOH HOH . U 4 HOH A 3 403 11 HOH HOH . V 4 HOH B 1 401 2 HOH HOH . V 4 HOH B 2 402 4 HOH HOH . V 4 HOH B 3 403 12 HOH HOH . W 4 HOH C 1 401 1 HOH HOH . W 4 HOH C 2 402 5 HOH HOH . W 4 HOH C 3 403 13 HOH HOH . X 4 HOH D 1 401 6 HOH HOH . X 4 HOH D 2 402 7 HOH HOH . X 4 HOH D 3 403 14 HOH HOH . Y 4 HOH E 1 401 8 HOH HOH . Y 4 HOH E 2 402 9 HOH HOH . Y 4 HOH E 3 403 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LFA . . . R 3 -36.873 -36.75 -0.562 1 86.22 ? C1 LFA 303 D 1 HETATM 2 C C2 LFA . . . R 3 -36.122 -37.664 -1.507 1 92.28 ? C2 LFA 303 D 1 HETATM 3 C C3 LFA . . . R 3 -36.659 -39.091 -1.451 1 100.49 ? C3 LFA 303 D 1 HETATM 4 C C4 LFA . . . R 3 -36.37 -39.849 -2.745 1 112.9 ? C4 LFA 303 D 1 HETATM 5 C C5 LFA . . . R 3 -35.062 -40.633 -2.667 1 120.87 ? C5 LFA 303 D 1 HETATM 6 C C6 LFA . . . R 3 -35.208 -41.88 -1.8 1 135.65 ? C6 LFA 303 D 1 HETATM 7 C C7 LFA . . . R 3 -34.586 -43.103 -2.468 1 141.69 ? C7 LFA 303 D 1 HETATM 8 C C8 LFA . . . R 3 -34.391 -44.242 -1.469 1 143.77 ? C8 LFA 303 D 1 HETATM 9 C C9 LFA . . . R 3 -35.522 -45.263 -1.55 1 136.07 ? C9 LFA 303 D 1 HETATM 10 C C10 LFA . . . R 3 -35.025 -46.622 -2.04 1 129.3 ? C10 LFA 303 D 1 HETATM 11 C C11 LFA . . . R 3 -34.584 -47.512 -0.881 1 128.87 ? C11 LFA 303 D 1 HETATM 12 C C12 LFA . . . R 3 -34.936 -48.98 -1.124 1 122.91 ? C12 LFA 303 D 1 HETATM 13 C C13 LFA . . . R 3 -36.09 -49.439 -0.235 1 111.41 ? C13 LFA 303 D 1 HETATM 14 C C14 LFA . . . R 3 -36.094 -50.956 -0.06 1 93.21 ? C14 LFA 303 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #