data_4XTP
#
_model_server_result.job_id            4H_FXOyZWt08iBRAx9F6Sg 
_model_server_result.datetime_utc      '2025-04-24 03:00:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xtp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":311}' 
#
_entry.id    4XTP 
#
_exptl.entry_id    4XTP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              105.093 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SERINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XTP 
_cell.length_a            56.093 
_cell.length_b            86.024 
_cell.length_c            128.877 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XTP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -56.093 0 0 
3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -56.093 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 L OG SER . A SER 311 1_555 M C1 A2G . A A2G 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
metalc ? metalc1 A OE1 GLU 125 A GLU 123 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
metalc ? metalc2 A OD1 ASP 127 A ASP 125 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc3 A OD2 ASP 127 A ASP 125 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc4 A OD2 ASP 127 A ASP 125 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? 
metalc ? metalc5 A O PHE 129 A PHE 127 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc6 A OD1 ASN 131 A ASN 129 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc7 A OD2 ASP 134 A ASP 132 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc8 A OD1 ASP 134 A ASP 132 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc9 A NE2 HIS 139 A HIS 137 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc10 B CA CA . A CA 301 1_555 N O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc11 B CA CA . A CA 301 1_555 N O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc12 C MN MN . A MN 302 1_555 N O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc13 C MN MN . A MN 302 1_555 N O HOH . A HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
#
_chem_comp.formula           'C3 H7 N O3' 
_chem_comp.formula_weight    105.093 
_chem_comp.id                SER 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              SERINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SER sing 314 n n 
N H SER sing 315 n n 
N H2 SER sing 316 n n 
CA C SER sing 317 n n 
CA CB SER sing 318 n n 
CA HA SER sing 319 n n 
C O SER doub 320 n n 
C OXT SER sing 321 n n 
CB OG SER sing 322 n n 
CB HB2 SER sing 323 n n 
CB HB3 SER sing 324 n n 
OG HG SER sing 325 n n 
OXT HXT SER sing 326 n n 
#
_atom_sites.entry_id                     4XTP 
_atom_sites.fract_transf_matrix[1][1]    0.017828 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011625 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007759 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 301 235 CA CA . 
C 3 MN A 1 302 236 MN MN . 
D 4 CIT A 1 303 237 CIT CIT . 
E 5 SO4 A 1 304 239 SO4 SO4 . 
F 5 SO4 A 1 305 240 SO4 SO4 . 
G 5 SO4 A 1 306 241 SO4 SO4 . 
H 5 SO4 A 1 307 242 SO4 SO4 . 
I 5 SO4 A 1 308 243 SO4 SO4 . 
J 5 SO4 A 1 309 244 SO4 SO4 . 
K 5 SO4 A 1 310 245 SO4 SO4 . 
L 6 SER A 1 311 238 SER TNR . 
M 7 A2G A 1 312 238 A2G TNR . 
N 8 HOH A 1 401 370 HOH HOH . 
N 8 HOH A 2 402 350 HOH HOH . 
N 8 HOH A 3 403 272 HOH HOH . 
N 8 HOH A 4 404 371 HOH HOH . 
N 8 HOH A 5 405 320 HOH HOH . 
N 8 HOH A 6 406 279 HOH HOH . 
N 8 HOH A 7 407 291 HOH HOH . 
N 8 HOH A 8 408 297 HOH HOH . 
N 8 HOH A 9 409 369 HOH HOH . 
N 8 HOH A 10 410 290 HOH HOH . 
N 8 HOH A 11 411 271 HOH HOH . 
N 8 HOH A 12 412 302 HOH HOH . 
N 8 HOH A 13 413 295 HOH HOH . 
N 8 HOH A 14 414 305 HOH HOH . 
N 8 HOH A 15 415 249 HOH HOH . 
N 8 HOH A 16 416 275 HOH HOH . 
N 8 HOH A 17 417 250 HOH HOH . 
N 8 HOH A 18 418 334 HOH HOH . 
N 8 HOH A 19 419 327 HOH HOH . 
N 8 HOH A 20 420 270 HOH HOH . 
N 8 HOH A 21 421 333 HOH HOH . 
N 8 HOH A 22 422 315 HOH HOH . 
N 8 HOH A 23 423 299 HOH HOH . 
N 8 HOH A 24 424 339 HOH HOH . 
N 8 HOH A 25 425 264 HOH HOH . 
N 8 HOH A 26 426 280 HOH HOH . 
N 8 HOH A 27 427 289 HOH HOH . 
N 8 HOH A 28 428 261 HOH HOH . 
N 8 HOH A 29 429 352 HOH HOH . 
N 8 HOH A 30 430 259 HOH HOH . 
N 8 HOH A 31 431 313 HOH HOH . 
N 8 HOH A 32 432 301 HOH HOH . 
N 8 HOH A 33 433 267 HOH HOH . 
N 8 HOH A 34 434 273 HOH HOH . 
N 8 HOH A 35 435 268 HOH HOH . 
N 8 HOH A 36 436 288 HOH HOH . 
N 8 HOH A 37 437 317 HOH HOH . 
N 8 HOH A 38 438 252 HOH HOH . 
N 8 HOH A 39 439 304 HOH HOH . 
N 8 HOH A 40 440 336 HOH HOH . 
N 8 HOH A 41 441 331 HOH HOH . 
N 8 HOH A 42 442 277 HOH HOH . 
N 8 HOH A 43 443 351 HOH HOH . 
N 8 HOH A 44 444 337 HOH HOH . 
N 8 HOH A 45 445 251 HOH HOH . 
N 8 HOH A 46 446 355 HOH HOH . 
N 8 HOH A 47 447 258 HOH HOH . 
N 8 HOH A 48 448 314 HOH HOH . 
N 8 HOH A 49 449 292 HOH HOH . 
N 8 HOH A 50 450 325 HOH HOH . 
N 8 HOH A 51 451 366 HOH HOH . 
N 8 HOH A 52 452 265 HOH HOH . 
N 8 HOH A 53 453 262 HOH HOH . 
N 8 HOH A 54 454 296 HOH HOH . 
N 8 HOH A 55 455 260 HOH HOH . 
N 8 HOH A 56 456 284 HOH HOH . 
N 8 HOH A 57 457 376 HOH HOH . 
N 8 HOH A 58 458 347 HOH HOH . 
N 8 HOH A 59 459 298 HOH HOH . 
N 8 HOH A 60 460 318 HOH HOH . 
N 8 HOH A 61 461 365 HOH HOH . 
N 8 HOH A 62 462 269 HOH HOH . 
N 8 HOH A 63 463 294 HOH HOH . 
N 8 HOH A 64 464 321 HOH HOH . 
N 8 HOH A 65 465 328 HOH HOH . 
N 8 HOH A 66 466 308 HOH HOH . 
N 8 HOH A 67 467 330 HOH HOH . 
N 8 HOH A 68 468 311 HOH HOH . 
N 8 HOH A 69 469 286 HOH HOH . 
N 8 HOH A 70 470 276 HOH HOH . 
N 8 HOH A 71 471 363 HOH HOH . 
N 8 HOH A 72 472 287 HOH HOH . 
N 8 HOH A 73 473 307 HOH HOH . 
N 8 HOH A 74 474 285 HOH HOH . 
N 8 HOH A 75 475 319 HOH HOH . 
N 8 HOH A 76 476 377 HOH HOH . 
N 8 HOH A 77 477 329 HOH HOH . 
N 8 HOH A 78 478 324 HOH HOH . 
N 8 HOH A 79 479 332 HOH HOH . 
N 8 HOH A 80 480 253 HOH HOH . 
N 8 HOH A 81 481 372 HOH HOH . 
N 8 HOH A 82 482 310 HOH HOH . 
N 8 HOH A 83 483 358 HOH HOH . 
N 8 HOH A 84 484 357 HOH HOH . 
N 8 HOH A 85 485 374 HOH HOH . 
N 8 HOH A 86 486 282 HOH HOH . 
N 8 HOH A 87 487 293 HOH HOH . 
N 8 HOH A 88 488 343 HOH HOH . 
N 8 HOH A 89 489 248 HOH HOH . 
N 8 HOH A 90 490 255 HOH HOH . 
N 8 HOH A 91 491 283 HOH HOH . 
N 8 HOH A 92 492 257 HOH HOH . 
N 8 HOH A 93 493 247 HOH HOH . 
N 8 HOH A 94 494 274 HOH HOH . 
N 8 HOH A 95 495 256 HOH HOH . 
N 8 HOH A 96 496 303 HOH HOH . 
N 8 HOH A 97 497 300 HOH HOH . 
N 8 HOH A 98 498 349 HOH HOH . 
N 8 HOH A 99 499 360 HOH HOH . 
N 8 HOH A 100 500 263 HOH HOH . 
N 8 HOH A 101 501 281 HOH HOH . 
N 8 HOH A 102 502 266 HOH HOH . 
N 8 HOH A 103 503 326 HOH HOH . 
N 8 HOH A 104 504 254 HOH HOH . 
N 8 HOH A 105 505 354 HOH HOH . 
N 8 HOH A 106 506 367 HOH HOH . 
N 8 HOH A 107 507 361 HOH HOH . 
N 8 HOH A 108 508 246 HOH HOH . 
N 8 HOH A 109 509 338 HOH HOH . 
N 8 HOH A 110 510 316 HOH HOH . 
N 8 HOH A 111 511 278 HOH HOH . 
N 8 HOH A 112 512 322 HOH HOH . 
N 8 HOH A 113 513 309 HOH HOH . 
N 8 HOH A 114 514 362 HOH HOH . 
N 8 HOH A 115 515 375 HOH HOH . 
N 8 HOH A 116 516 346 HOH HOH . 
N 8 HOH A 117 517 356 HOH HOH . 
N 8 HOH A 118 518 342 HOH HOH . 
N 8 HOH A 119 519 364 HOH HOH . 
N 8 HOH A 120 520 335 HOH HOH . 
N 8 HOH A 121 521 353 HOH HOH . 
N 8 HOH A 122 522 359 HOH HOH . 
N 8 HOH A 123 523 344 HOH HOH . 
N 8 HOH A 124 524 368 HOH HOH . 
N 8 HOH A 125 525 345 HOH HOH . 
N 8 HOH A 126 526 379 HOH HOH . 
N 8 HOH A 127 527 323 HOH HOH . 
N 8 HOH A 128 528 348 HOH HOH . 
N 8 HOH A 129 529 341 HOH HOH . 
N 8 HOH A 130 530 306 HOH HOH . 
N 8 HOH A 131 531 380 HOH HOH . 
N 8 HOH A 132 532 312 HOH HOH . 
N 8 HOH A 133 533 378 HOH HOH . 
N 8 HOH A 134 534 340 HOH HOH . 
N 8 HOH A 135 535 373 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SER . . . L 6 -22.767 -27.723 -36.878 1 35.03 ? N SER 311 A 1 
HETATM 2 C CA SER . . . L 6 -21.415 -27.245 -36.655 1 30.45 ? CA SER 311 A 1 
HETATM 3 C C SER . . . L 6 -20.535 -27.684 -37.778 1 38.45 ? C SER 311 A 1 
HETATM 4 O O SER . . . L 6 -19.305 -27.483 -37.697 1 38.02 ? O SER 311 A 1 
HETATM 5 C CB SER . . . L 6 -20.917 -27.856 -35.358 1 30.52 ? CB SER 311 A 1 
HETATM 6 O OG SER . . . L 6 -21.685 -27.336 -34.275 1 28.84 ? OG SER 311 A 1 
HETATM 7 O OXT SER . . . L 6 -21.045 -28.244 -38.77 1 36.41 ? OXT SER 311 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#