data_4XTT
#
_model_server_result.job_id            wsk3Ro7BQNmwvB_kLXLfCw 
_model_server_result.datetime_utc      '2024-12-22 06:26:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xtt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4XTT 
#
_exptl.entry_id    4XTT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              658.412 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XTT 
_cell.length_a            84.976 
_cell.length_b            84.976 
_cell.length_c            85.575 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XTT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H24 N10 O12 P2' 
_chem_comp.formula_weight    658.412 
_chem_comp.id                2BA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 2BA doub 1 n n 
P O2P 2BA sing 2 n n 
P O5' 2BA sing 3 n n 
P "O3'1" 2BA sing 4 n n 
O5' C5' 2BA sing 5 n n 
C5' C4' 2BA sing 6 n n 
C4' O4' 2BA sing 7 n n 
C4' C3' 2BA sing 8 n n 
O4' C1' 2BA sing 9 n n 
C3' O3' 2BA sing 10 n n 
C3' C2' 2BA sing 11 n n 
O3' P1 2BA sing 12 n n 
C2' O2' 2BA sing 13 n n 
C2' C1' 2BA sing 14 n n 
C1' N9 2BA sing 15 n n 
N9 C8 2BA sing 16 n y 
N9 C4 2BA sing 17 n y 
C8 N7 2BA doub 18 n y 
N7 C5 2BA sing 19 n y 
C5 C6 2BA doub 20 n y 
C5 C4 2BA sing 21 n y 
C6 N6 2BA sing 22 n n 
C6 N1 2BA sing 23 n y 
N1 C2 2BA doub 24 n y 
C2 N3 2BA sing 25 n y 
N3 C4 2BA doub 26 n y 
P1 O1P1 2BA doub 27 n n 
P1 O2P1 2BA sing 28 n n 
P1 "O5'1" 2BA sing 29 n n 
"O5'1" "C5'1" 2BA sing 30 n n 
"C5'1" "C4'1" 2BA sing 31 n n 
"C4'1" "O4'1" 2BA sing 32 n n 
"C4'1" "C3'1" 2BA sing 33 n n 
"O4'1" "C1'1" 2BA sing 34 n n 
"C3'1" "O3'1" 2BA sing 35 n n 
"C3'1" "C2'1" 2BA sing 36 n n 
"C2'1" "O2'1" 2BA sing 37 n n 
"C2'1" "C1'1" 2BA sing 38 n n 
"C1'1" N91 2BA sing 39 n n 
N91 C81 2BA sing 40 n y 
N91 C41 2BA sing 41 n y 
C81 N71 2BA doub 42 n y 
N71 C51 2BA sing 43 n y 
C51 C61 2BA doub 44 n y 
C51 C41 2BA sing 45 n y 
C61 N61 2BA sing 46 n n 
C61 N11 2BA sing 47 n y 
N11 C21 2BA doub 48 n y 
C21 N31 2BA sing 49 n y 
N31 C41 2BA doub 50 n y 
C5' H5' 2BA sing 51 n n 
C5' "H5'A" 2BA sing 52 n n 
C4' H4' 2BA sing 53 n n 
C3' H3' 2BA sing 54 n n 
C2' H2' 2BA sing 55 n n 
O2' HO2' 2BA sing 56 n n 
C1' H1' 2BA sing 57 n n 
C8 H8 2BA sing 58 n n 
N6 HN6 2BA sing 59 n n 
N6 HN6A 2BA sing 60 n n 
C2 H2 2BA sing 61 n n 
"C5'1" HC5' 2BA sing 62 n n 
"C5'1" HC5A 2BA sing 63 n n 
"C4'1" HC4' 2BA sing 64 n n 
"C3'1" HC3' 2BA sing 65 n n 
"C2'1" HC2' 2BA sing 66 n n 
"O2'1" HO2A 2BA sing 67 n n 
"C1'1" HC1' 2BA sing 68 n n 
C81 HC8 2BA sing 69 n n 
N61 H1N6 2BA sing 70 n n 
N61 H1NA 2BA sing 71 n n 
C21 HC2 2BA sing 72 n n 
O2P H2P 2BA sing 73 n n 
O2P1 H2OP 2BA sing 74 n n 
#
_atom_sites.entry_id                     4XTT 
_atom_sites.fract_transf_matrix[1][1]    0.011768 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011768 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011686 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2BA A 1 301 1 2BA 2BA . 
D 3 HOH A 1 401 1 HOH HOH . 
D 3 HOH A 2 402 14 HOH HOH . 
D 3 HOH A 3 403 41 HOH HOH . 
D 3 HOH A 4 404 3 HOH HOH . 
D 3 HOH A 5 405 8 HOH HOH . 
D 3 HOH A 6 406 9 HOH HOH . 
D 3 HOH A 7 407 12 HOH HOH . 
D 3 HOH A 8 408 16 HOH HOH . 
D 3 HOH A 9 409 22 HOH HOH . 
D 3 HOH A 10 410 34 HOH HOH . 
E 3 HOH B 1 301 29 HOH HOH . 
E 3 HOH B 2 302 4 HOH HOH . 
E 3 HOH B 3 303 18 HOH HOH . 
E 3 HOH B 4 304 42 HOH HOH . 
E 3 HOH B 5 305 32 HOH HOH . 
E 3 HOH B 6 306 10 HOH HOH . 
E 3 HOH B 7 307 11 HOH HOH . 
E 3 HOH B 8 308 17 HOH HOH . 
E 3 HOH B 9 309 21 HOH HOH . 
E 3 HOH B 10 310 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 2BA . . . C 2 1.808 -37.904 10.51 1 28.13 ? P 2BA 301 A 1 
HETATM 2 O O1P 2BA . . . C 2 1.039 -36.691 10.867 1 29.8 -1 O1P 2BA 301 A 1 
HETATM 3 O O2P 2BA . . . C 2 2.573 -38.318 11.728 1 29.19 ? O2P 2BA 301 A 1 
HETATM 4 O O5' 2BA . . . C 2 0.778 -39.079 10.145 1 24.1 ? O5' 2BA 301 A 1 
HETATM 5 C C5' 2BA . . . C 2 1.292 -40.368 9.763 1 19.19 ? C5' 2BA 301 A 1 
HETATM 6 C C4' 2BA . . . C 2 0.189 -41.202 9.247 1 23.8 ? C4' 2BA 301 A 1 
HETATM 7 O O4' 2BA . . . C 2 -1.001 -41.191 10.154 1 25.45 ? O4' 2BA 301 A 1 
HETATM 8 C C3' 2BA . . . C 2 -0.276 -40.661 7.973 1 22.95 ? C3' 2BA 301 A 1 
HETATM 9 O O3' 2BA . . . C 2 0.46 -41.278 6.881 1 28.92 ? O3' 2BA 301 A 1 
HETATM 10 C C2' 2BA . . . C 2 -1.673 -41.03 7.878 1 32.26 ? C2' 2BA 301 A 1 
HETATM 11 O O2' 2BA . . . C 2 -1.815 -42.358 7.299 1 28.45 ? O2' 2BA 301 A 1 
HETATM 12 C C1' 2BA . . . C 2 -2.176 -41.02 9.269 1 19.51 ? C1' 2BA 301 A 1 
HETATM 13 N N9 2BA . . . C 2 -2.765 -39.789 9.554 1 33.94 ? N9 2BA 301 A 1 
HETATM 14 C C8 2BA . . . C 2 -2.168 -39.044 10.282 1 32.24 ? C8 2BA 301 A 1 
HETATM 15 N N7 2BA . . . C 2 -2.892 -37.9 10.448 1 24.09 ? N7 2BA 301 A 1 
HETATM 16 C C5 2BA . . . C 2 -4.078 -38.225 9.583 1 20.6 ? C5 2BA 301 A 1 
HETATM 17 C C6 2BA . . . C 2 -5.276 -37.655 9.177 1 22.1 ? C6 2BA 301 A 1 
HETATM 18 N N6 2BA . . . C 2 -5.592 -36.378 9.646 1 18.3 ? N6 2BA 301 A 1 
HETATM 19 N N1 2BA . . . C 2 -6.138 -38.276 8.356 1 23.42 ? N1 2BA 301 A 1 
HETATM 20 C C2 2BA . . . C 2 -5.87 -39.474 7.902 1 18.8 ? C2 2BA 301 A 1 
HETATM 21 N N3 2BA . . . C 2 -4.753 -40.098 8.227 1 22.07 ? N3 2BA 301 A 1 
HETATM 22 C C4 2BA . . . C 2 -3.839 -39.539 9.05 1 33.07 ? C4 2BA 301 A 1 
HETATM 23 P P1 2BA . . . C 2 0.834 -40.319 5.643 1 32.74 ? P1 2BA 301 A 1 
HETATM 24 O O1P1 2BA . . . C 2 -0.463 -39.887 5.055 1 26.6 -1 O1P1 2BA 301 A 1 
HETATM 25 O O2P1 2BA . . . C 2 1.558 -41.138 4.629 1 27.35 ? O2P1 2BA 301 A 1 
HETATM 26 O "O5'1" 2BA . . . C 2 1.661 -38.982 5.951 1 26.93 ? "O5'1" 2BA 301 A 1 
HETATM 27 C "C5'1" 2BA . . . C 2 2.918 -39.035 6.606 1 17.93 ? "C5'1" 2BA 301 A 1 
HETATM 28 C "C4'1" 2BA . . . C 2 3.269 -37.658 7.016 1 21.92 ? "C4'1" 2BA 301 A 1 
HETATM 29 O "O4'1" 2BA . . . C 2 3.098 -36.72 5.874 1 22.64 ? "O4'1" 2BA 301 A 1 
HETATM 30 C "C3'1" 2BA . . . C 2 2.344 -37.183 8.057 1 24.73 ? "C3'1" 2BA 301 A 1 
HETATM 31 O "O3'1" 2BA . . . C 2 2.855 -37.466 9.384 1 30.49 ? "O3'1" 2BA 301 A 1 
HETATM 32 C "C2'1" 2BA . . . C 2 2.245 -35.745 7.869 1 31.35 ? "C2'1" 2BA 301 A 1 
HETATM 33 O "O2'1" 2BA . . . C 2 3.327 -35.105 8.59 1 32.48 ? "O2'1" 2BA 301 A 1 
HETATM 34 C "C1'1" 2BA . . . C 2 2.405 -35.519 6.422 1 21.33 ? "C1'1" 2BA 301 A 1 
HETATM 35 N N91 2BA . . . C 2 1.151 -35.359 5.801 1 31.32 ? N91 2BA 301 A 1 
HETATM 36 C C81 2BA . . . C 2 0.747 -36.227 5.041 1 21.66 ? C81 2BA 301 A 1 
HETATM 37 N N71 2BA . . . C 2 -0.486 -35.922 4.525 1 20.72 ? N71 2BA 301 A 1 
HETATM 38 C C51 2BA . . . C 2 -0.669 -34.598 5.229 1 28.42 ? C51 2BA 301 A 1 
HETATM 39 C C61 2BA . . . C 2 -1.632 -33.585 5.292 1 26.57 ? C61 2BA 301 A 1 
HETATM 40 N N61 2BA . . . C 2 -2.833 -33.701 4.532 1 35.3 ? N61 2BA 301 A 1 
HETATM 41 N N11 2BA . . . C 2 -1.481 -32.514 6.033 1 26.91 ? N11 2BA 301 A 1 
HETATM 42 C C21 2BA . . . C 2 -0.388 -32.336 6.763 1 22.07 ? C21 2BA 301 A 1 
HETATM 43 N N31 2BA . . . C 2 0.607 -33.231 6.788 1 26.08 ? N31 2BA 301 A 1 
HETATM 44 C C41 2BA . . . C 2 0.523 -34.366 6.048 1 30.31 ? C41 2BA 301 A 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#