data_4XU3 # _model_server_result.job_id CEpmbyvxYTppuR6FoktuZw _model_server_result.datetime_utc '2025-09-30 20:05:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xu3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":300}' # _entry.id 4XU3 # _exptl.entry_id 4XU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 513.594 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-({2-[(6-amino-9H-purin-9-yl)methoxy]ethyl}sulfamoyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XU3 _cell.length_a 63.326 _cell.length_b 68.73 _cell.length_c 114.093 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C18 H27 N9 O5 S2' _chem_comp.formula_weight 513.594 _chem_comp.id 44R _chem_comp.mon_nstd_flag . _chem_comp.name N-({2-[(6-amino-9H-purin-9-yl)methoxy]ethyl}sulfamoyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAE SBK 44R doub 1 n n OAD SBK 44R doub 2 n n SBK NAW 44R sing 3 n n SBK NAV 44R sing 4 n n NAW CAN 44R sing 5 n n NAV CAZ 44R sing 6 n n CAN CBE 44R sing 7 n n CAZ OAB 44R doub 8 n n CAZ CAJ 44R sing 9 n n CBE OAX 44R sing 10 n n OAX CBG 44R sing 11 n n CAJ CAH 44R sing 12 n n CBG N9 44R sing 13 n n CAH CAI 44R sing 14 n n N9 C4 44R sing 15 n y N9 C8 44R sing 16 n y N3 C4 44R doub 17 n y N3 C2 44R sing 18 n y CAI CAK 44R sing 19 n n C4 C5 44R sing 20 n y C8 N7 44R doub 21 n y C2 N1 44R doub 22 n y C5 N7 44R sing 23 n y C5 C6 44R doub 24 n y CAK CBH 44R sing 25 n n N1 C6 44R sing 26 n y NAU CBI 44R sing 27 n n NAU CBA 44R sing 28 n n C6 N6 44R sing 29 n n CBI CBH 44R sing 30 n n CBI CBF 44R sing 31 n n CBH SAY 44R sing 32 n n OAC CBA 44R doub 33 n n CBA NAT 44R sing 34 n n CBF NAT 44R sing 35 n n CBF CAO 44R sing 36 n n SAY CAO 44R sing 37 n n C2 H1 44R sing 38 n n C8 H2 44R sing 39 n n CBI H3 44R sing 40 n n NAU H4 44R sing 41 n n NAT H5 44R sing 42 n n CBF H6 44R sing 43 n n CAO H7 44R sing 44 n n CAO H8 44R sing 45 n n CBH H9 44R sing 46 n n CAK H10 44R sing 47 n n CAK H11 44R sing 48 n n CAI H12 44R sing 49 n n CAI H13 44R sing 50 n n CAH H14 44R sing 51 n n CAH H15 44R sing 52 n n CAJ H16 44R sing 53 n n CAJ H17 44R sing 54 n n NAV H18 44R sing 55 n n NAW H19 44R sing 56 n n CAN H20 44R sing 57 n n CAN H21 44R sing 58 n n CBE H22 44R sing 59 n n CBE H23 44R sing 60 n n CBG H24 44R sing 61 n n CBG H25 44R sing 62 n n N6 H26 44R sing 63 n n N6 H27 44R sing 64 n n # _atom_sites.entry_id 4XU3 _atom_sites.fract_transf_matrix[1][1] 0.015791 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 44R A 1 301 300 44R 607 . D 3 CL A 1 302 400 CL CL . E 2 44R B 1 300 300 44R 607 . F 4 HOH A 1 401 119 HOH HOH . F 4 HOH A 2 402 32 HOH HOH . F 4 HOH A 3 403 64 HOH HOH . F 4 HOH A 4 404 77 HOH HOH . F 4 HOH A 5 405 160 HOH HOH . F 4 HOH A 6 406 61 HOH HOH . F 4 HOH A 7 407 52 HOH HOH . F 4 HOH A 8 408 92 HOH HOH . F 4 HOH A 9 409 11 HOH HOH . F 4 HOH A 10 410 80 HOH HOH . F 4 HOH A 11 411 84 HOH HOH . F 4 HOH A 12 412 165 HOH HOH . F 4 HOH A 13 413 7 HOH HOH . F 4 HOH A 14 414 39 HOH HOH . F 4 HOH A 15 415 25 HOH HOH . F 4 HOH A 16 416 3 HOH HOH . F 4 HOH A 17 417 114 HOH HOH . F 4 HOH A 18 418 48 HOH HOH . F 4 HOH A 19 419 173 HOH HOH . F 4 HOH A 20 420 10 HOH HOH . F 4 HOH A 21 421 74 HOH HOH . F 4 HOH A 22 422 123 HOH HOH . F 4 HOH A 23 423 164 HOH HOH . F 4 HOH A 24 424 68 HOH HOH . F 4 HOH A 25 425 9 HOH HOH . F 4 HOH A 26 426 144 HOH HOH . F 4 HOH A 27 427 12 HOH HOH . F 4 HOH A 28 428 70 HOH HOH . F 4 HOH A 29 429 124 HOH HOH . F 4 HOH A 30 430 89 HOH HOH . F 4 HOH A 31 431 133 HOH HOH . F 4 HOH A 32 432 40 HOH HOH . F 4 HOH A 33 433 110 HOH HOH . F 4 HOH A 34 434 23 HOH HOH . F 4 HOH A 35 435 172 HOH HOH . F 4 HOH A 36 436 103 HOH HOH . F 4 HOH A 37 437 72 HOH HOH . F 4 HOH A 38 438 138 HOH HOH . F 4 HOH A 39 439 157 HOH HOH . F 4 HOH A 40 440 56 HOH HOH . F 4 HOH A 41 441 1 HOH HOH . F 4 HOH A 42 442 5 HOH HOH . F 4 HOH A 43 443 6 HOH HOH . F 4 HOH A 44 444 8 HOH HOH . F 4 HOH A 45 445 13 HOH HOH . F 4 HOH A 46 446 17 HOH HOH . F 4 HOH A 47 447 21 HOH HOH . F 4 HOH A 48 448 22 HOH HOH . F 4 HOH A 49 449 28 HOH HOH . F 4 HOH A 50 450 29 HOH HOH . F 4 HOH A 51 451 34 HOH HOH . F 4 HOH A 52 452 35 HOH HOH . F 4 HOH A 53 453 37 HOH HOH . F 4 HOH A 54 454 38 HOH HOH . F 4 HOH A 55 455 41 HOH HOH . F 4 HOH A 56 456 42 HOH HOH . F 4 HOH A 57 457 45 HOH HOH . F 4 HOH A 58 458 46 HOH HOH . F 4 HOH A 59 459 47 HOH HOH . F 4 HOH A 60 460 51 HOH HOH . F 4 HOH A 61 461 53 HOH HOH . F 4 HOH A 62 462 55 HOH HOH . F 4 HOH A 63 463 60 HOH HOH . F 4 HOH A 64 464 62 HOH HOH . F 4 HOH A 65 465 63 HOH HOH . F 4 HOH A 66 466 66 HOH HOH . F 4 HOH A 67 467 73 HOH HOH . F 4 HOH A 68 468 79 HOH HOH . F 4 HOH A 69 469 81 HOH HOH . F 4 HOH A 70 470 82 HOH HOH . F 4 HOH A 71 471 85 HOH HOH . F 4 HOH A 72 472 86 HOH HOH . F 4 HOH A 73 473 87 HOH HOH . F 4 HOH A 74 474 90 HOH HOH . F 4 HOH A 75 475 95 HOH HOH . F 4 HOH A 76 476 99 HOH HOH . F 4 HOH A 77 477 100 HOH HOH . F 4 HOH A 78 478 105 HOH HOH . F 4 HOH A 79 479 108 HOH HOH . F 4 HOH A 80 480 111 HOH HOH . F 4 HOH A 81 481 113 HOH HOH . F 4 HOH A 82 482 118 HOH HOH . F 4 HOH A 83 483 122 HOH HOH . F 4 HOH A 84 484 128 HOH HOH . F 4 HOH A 85 485 137 HOH HOH . F 4 HOH A 86 486 139 HOH HOH . F 4 HOH A 87 487 143 HOH HOH . F 4 HOH A 88 488 146 HOH HOH . F 4 HOH A 89 489 152 HOH HOH . F 4 HOH A 90 490 153 HOH HOH . F 4 HOH A 91 491 159 HOH HOH . F 4 HOH A 92 492 169 HOH HOH . F 4 HOH A 93 493 170 HOH HOH . F 4 HOH A 94 494 175 HOH HOH . F 4 HOH A 95 495 176 HOH HOH . F 4 HOH A 96 496 177 HOH HOH . F 4 HOH A 97 497 178 HOH HOH . F 4 HOH A 98 498 179 HOH HOH . F 4 HOH A 99 499 180 HOH HOH . G 4 HOH B 1 401 58 HOH HOH . G 4 HOH B 2 402 107 HOH HOH . G 4 HOH B 3 403 158 HOH HOH . G 4 HOH B 4 404 141 HOH HOH . G 4 HOH B 5 405 112 HOH HOH . G 4 HOH B 6 406 15 HOH HOH . G 4 HOH B 7 407 19 HOH HOH . G 4 HOH B 8 408 78 HOH HOH . G 4 HOH B 9 409 156 HOH HOH . G 4 HOH B 10 410 33 HOH HOH . G 4 HOH B 11 411 102 HOH HOH . G 4 HOH B 12 412 67 HOH HOH . G 4 HOH B 13 413 16 HOH HOH . G 4 HOH B 14 414 69 HOH HOH . G 4 HOH B 15 415 91 HOH HOH . G 4 HOH B 16 416 2 HOH HOH . G 4 HOH B 17 417 4 HOH HOH . G 4 HOH B 18 418 30 HOH HOH . G 4 HOH B 19 419 115 HOH HOH . G 4 HOH B 20 420 161 HOH HOH . G 4 HOH B 21 421 83 HOH HOH . G 4 HOH B 22 422 43 HOH HOH . G 4 HOH B 23 423 166 HOH HOH . G 4 HOH B 24 424 49 HOH HOH . G 4 HOH B 25 425 31 HOH HOH . G 4 HOH B 26 426 94 HOH HOH . G 4 HOH B 27 427 168 HOH HOH . G 4 HOH B 28 428 147 HOH HOH . G 4 HOH B 29 429 54 HOH HOH . G 4 HOH B 30 430 155 HOH HOH . G 4 HOH B 31 431 140 HOH HOH . G 4 HOH B 32 432 57 HOH HOH . G 4 HOH B 33 433 135 HOH HOH . G 4 HOH B 34 434 136 HOH HOH . G 4 HOH B 35 435 14 HOH HOH . G 4 HOH B 36 436 18 HOH HOH . G 4 HOH B 37 437 20 HOH HOH . G 4 HOH B 38 438 24 HOH HOH . G 4 HOH B 39 439 26 HOH HOH . G 4 HOH B 40 440 27 HOH HOH . G 4 HOH B 41 441 36 HOH HOH . G 4 HOH B 42 442 44 HOH HOH . G 4 HOH B 43 443 50 HOH HOH . G 4 HOH B 44 444 59 HOH HOH . G 4 HOH B 45 445 65 HOH HOH . G 4 HOH B 46 446 71 HOH HOH . G 4 HOH B 47 447 75 HOH HOH . G 4 HOH B 48 448 76 HOH HOH . G 4 HOH B 49 449 88 HOH HOH . G 4 HOH B 50 450 93 HOH HOH . G 4 HOH B 51 451 96 HOH HOH . G 4 HOH B 52 452 97 HOH HOH . G 4 HOH B 53 453 98 HOH HOH . G 4 HOH B 54 454 101 HOH HOH . G 4 HOH B 55 455 104 HOH HOH . G 4 HOH B 56 456 106 HOH HOH . G 4 HOH B 57 457 109 HOH HOH . G 4 HOH B 58 458 116 HOH HOH . G 4 HOH B 59 459 117 HOH HOH . G 4 HOH B 60 460 120 HOH HOH . G 4 HOH B 61 461 121 HOH HOH . G 4 HOH B 62 462 125 HOH HOH . G 4 HOH B 63 463 126 HOH HOH . G 4 HOH B 64 464 127 HOH HOH . G 4 HOH B 65 465 129 HOH HOH . G 4 HOH B 66 466 130 HOH HOH . G 4 HOH B 67 467 131 HOH HOH . G 4 HOH B 68 468 132 HOH HOH . G 4 HOH B 69 469 134 HOH HOH . G 4 HOH B 70 470 142 HOH HOH . G 4 HOH B 71 471 145 HOH HOH . G 4 HOH B 72 472 148 HOH HOH . G 4 HOH B 73 473 149 HOH HOH . G 4 HOH B 74 474 150 HOH HOH . G 4 HOH B 75 475 154 HOH HOH . G 4 HOH B 76 476 162 HOH HOH . G 4 HOH B 77 477 163 HOH HOH . G 4 HOH B 78 478 167 HOH HOH . G 4 HOH B 79 479 171 HOH HOH . G 4 HOH B 80 480 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 44R . . . E 2 -3.489 -10.252 -39.083 1 39.97 ? C2 44R 300 B 1 HETATM 2 C C4 44R . . . E 2 -5.462 -9.016 -38.923 1 38.51 ? C4 44R 300 B 1 HETATM 3 C C5 44R . . . E 2 -5.856 -9.491 -40.162 1 42.22 ? C5 44R 300 B 1 HETATM 4 C C6 44R . . . E 2 -5.019 -10.359 -40.849 1 37.91 ? C6 44R 300 B 1 HETATM 5 N N1 44R . . . E 2 -3.845 -10.721 -40.287 1 39.3 ? N1 44R 300 B 1 HETATM 6 N N3 44R . . . E 2 -4.277 -9.411 -38.401 1 34.84 ? N3 44R 300 B 1 HETATM 7 C C8 44R . . . E 2 -7.404 -8.164 -39.392 1 38.37 ? C8 44R 300 B 1 HETATM 8 C CBI 44R . . . E 2 -12.611 -16.748 -38.203 1 33.74 ? CBI 44R 300 B 1 HETATM 9 N NAU 44R . . . E 2 -13.417 -15.553 -38.054 1 37.88 ? NAU 44R 300 B 1 HETATM 10 C CBA 44R . . . E 2 -14.442 -15.548 -38.9 1 37.28 ? CBA 44R 300 B 1 HETATM 11 O OAC 44R . . . E 2 -15.216 -14.62 -39.061 1 35.55 ? OAC 44R 300 B 1 HETATM 12 N NAT 44R . . . E 2 -14.497 -16.689 -39.571 1 38.56 ? NAT 44R 300 B 1 HETATM 13 C CBF 44R . . . E 2 -13.295 -17.462 -39.37 1 35.36 ? CBF 44R 300 B 1 HETATM 14 C CAO 44R . . . E 2 -12.488 -17.384 -40.655 1 35.04 ? CAO 44R 300 B 1 HETATM 15 S SAY 44R . . . E 2 -11.015 -16.522 -40.257 1 34.96 ? SAY 44R 300 B 1 HETATM 16 C CBH 44R . . . E 2 -11.16 -16.398 -38.51 1 37.11 ? CBH 44R 300 B 1 HETATM 17 C CAK 44R . . . E 2 -10.792 -15.013 -37.998 1 31.96 ? CAK 44R 300 B 1 HETATM 18 C CAI 44R . . . E 2 -10.415 -15.113 -36.524 1 32.25 ? CAI 44R 300 B 1 HETATM 19 C CAH 44R . . . E 2 -9.712 -13.859 -36.021 1 35.88 ? CAH 44R 300 B 1 HETATM 20 C CAJ 44R . . . E 2 -9.277 -14.03 -34.569 1 35.91 ? CAJ 44R 300 B 1 HETATM 21 C CAZ 44R . . . E 2 -8.404 -12.871 -34.145 1 36.47 ? CAZ 44R 300 B 1 HETATM 22 O OAB 44R . . . E 2 -7.243 -12.811 -34.519 1 28.64 ? OAB 44R 300 B 1 HETATM 23 N NAV 44R . . . E 2 -8.975 -11.956 -33.361 1 36.89 ? NAV 44R 300 B 1 HETATM 24 S SBK 44R . . . E 2 -8.116 -10.805 -32.647 1 31.76 ? SBK 44R 300 B 1 HETATM 25 O OAD 44R . . . E 2 -6.849 -11.324 -32.209 1 33.77 ? OAD 44R 300 B 1 HETATM 26 O OAE 44R . . . E 2 -8.831 -10.311 -31.505 1 39.45 ? OAE 44R 300 B 1 HETATM 27 N NAW 44R . . . E 2 -7.862 -9.579 -33.637 1 33.68 ? NAW 44R 300 B 1 HETATM 28 C CAN 44R . . . E 2 -8.458 -9.546 -34.954 1 31.91 ? CAN 44R 300 B 1 HETATM 29 C CBE 44R . . . E 2 -8.069 -8.276 -35.696 1 38.43 ? CBE 44R 300 B 1 HETATM 30 O OAX 44R . . . E 2 -6.742 -8.443 -36.181 1 37.64 ? OAX 44R 300 B 1 HETATM 31 C CBG 44R . . . E 2 -6.417 -7.501 -37.198 1 40.22 ? CBG 44R 300 B 1 HETATM 32 N N9 44R . . . E 2 -6.429 -8.214 -38.472 1 42.91 ? N9 44R 300 B 1 HETATM 33 N N7 44R . . . E 2 -7.061 -8.95 -40.438 1 43.03 ? N7 44R 300 B 1 HETATM 34 N N6 44R . . . E 2 -5.375 -10.839 -42.065 1 36.55 ? N6 44R 300 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #