data_4XU4 # _model_server_result.job_id mP7w6iJ66jPHoQu3dGPAtw _model_server_result.datetime_utc '2024-11-26 15:13:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xu4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4XU4 # _exptl.entry_id 4XU4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.349 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECYLAMINE-N,N-DIMETHYL-N-OXIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XU4 _cell.length_a 85.498 _cell.length_b 85.498 _cell.length_c 125.851 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XU4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -y+2,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 170.996 0 0 3 'crystal symmetry operation' 3_775 -x+y+2,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 85.498 148.08688 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C12 H27 N O' _chem_comp.formula_weight 201.349 _chem_comp.id DDQ _chem_comp.mon_nstd_flag . _chem_comp.name DECYLAMINE-N,N-DIMETHYL-N-OXIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 DDQ sing 118 n n N1 CM1 DDQ sing 119 n n N1 CM2 DDQ sing 120 n n N1 C1 DDQ sing 121 n n CM1 HM11 DDQ sing 122 n n CM1 HM12 DDQ sing 123 n n CM1 HM13 DDQ sing 124 n n CM2 HM21 DDQ sing 125 n n CM2 HM22 DDQ sing 126 n n CM2 HM23 DDQ sing 127 n n C1 C2 DDQ sing 128 n n C1 H11 DDQ sing 129 n n C1 H12 DDQ sing 130 n n C2 C3 DDQ sing 131 n n C2 H21 DDQ sing 132 n n C2 H22 DDQ sing 133 n n C3 C4 DDQ sing 134 n n C3 H31 DDQ sing 135 n n C3 H32 DDQ sing 136 n n C4 C5 DDQ sing 137 n n C4 H41 DDQ sing 138 n n C4 H42 DDQ sing 139 n n C5 C6 DDQ sing 140 n n C5 H51 DDQ sing 141 n n C5 H52 DDQ sing 142 n n C6 C7 DDQ sing 143 n n C6 H61 DDQ sing 144 n n C6 H62 DDQ sing 145 n n C7 C8 DDQ sing 146 n n C7 H71 DDQ sing 147 n n C7 H72 DDQ sing 148 n n C8 C9 DDQ sing 149 n n C8 H81 DDQ sing 150 n n C8 H82 DDQ sing 151 n n C9 C10 DDQ sing 152 n n C9 H91 DDQ sing 153 n n C9 H92 DDQ sing 154 n n C10 H101 DDQ sing 155 n n C10 H102 DDQ sing 156 n n C10 H103 DDQ sing 157 n n # _atom_sites.entry_id 4XU4 _atom_sites.fract_transf_matrix[1][1] 0.011696 _atom_sites.fract_transf_matrix[1][2] 0.006753 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BNG A 1 301 1 BNG BNG . C 2 BNG A 1 302 2 BNG BNG . D 3 DDQ A 1 303 1 DDQ DDQ . E 2 BNG A 1 304 1 BNG BNG . F 3 DDQ A 1 305 1 DDQ DDQ . G 4 HOH A 1 401 77 HOH HOH . G 4 HOH A 2 402 39 HOH HOH . G 4 HOH A 3 403 79 HOH HOH . G 4 HOH A 4 404 41 HOH HOH . G 4 HOH A 5 405 5 HOH HOH . G 4 HOH A 6 406 35 HOH HOH . G 4 HOH A 7 407 97 HOH HOH . G 4 HOH A 8 408 16 HOH HOH . G 4 HOH A 9 409 20 HOH HOH . G 4 HOH A 10 410 26 HOH HOH . G 4 HOH A 11 411 31 HOH HOH . G 4 HOH A 12 412 46 HOH HOH . G 4 HOH A 13 413 47 HOH HOH . G 4 HOH A 14 414 28 HOH HOH . G 4 HOH A 15 415 38 HOH HOH . G 4 HOH A 16 416 56 HOH HOH . G 4 HOH A 17 417 80 HOH HOH . G 4 HOH A 18 418 1 HOH HOH . G 4 HOH A 19 419 113 HOH HOH . G 4 HOH A 20 420 101 HOH HOH . G 4 HOH A 21 421 82 HOH HOH . G 4 HOH A 22 422 62 HOH HOH . G 4 HOH A 23 423 43 HOH HOH . G 4 HOH A 24 424 84 HOH HOH . G 4 HOH A 25 425 90 HOH HOH . G 4 HOH A 26 426 120 HOH HOH . G 4 HOH A 27 427 2 HOH HOH . G 4 HOH A 28 428 3 HOH HOH . G 4 HOH A 29 429 4 HOH HOH . G 4 HOH A 30 430 6 HOH HOH . G 4 HOH A 31 431 7 HOH HOH . G 4 HOH A 32 432 8 HOH HOH . G 4 HOH A 33 433 9 HOH HOH . G 4 HOH A 34 434 10 HOH HOH . G 4 HOH A 35 435 11 HOH HOH . G 4 HOH A 36 436 12 HOH HOH . G 4 HOH A 37 437 13 HOH HOH . G 4 HOH A 38 438 14 HOH HOH . G 4 HOH A 39 439 15 HOH HOH . G 4 HOH A 40 440 17 HOH HOH . G 4 HOH A 41 441 18 HOH HOH . G 4 HOH A 42 442 19 HOH HOH . G 4 HOH A 43 443 21 HOH HOH . G 4 HOH A 44 444 22 HOH HOH . G 4 HOH A 45 445 23 HOH HOH . G 4 HOH A 46 446 27 HOH HOH . G 4 HOH A 47 447 29 HOH HOH . G 4 HOH A 48 448 32 HOH HOH . G 4 HOH A 49 449 33 HOH HOH . G 4 HOH A 50 450 34 HOH HOH . G 4 HOH A 51 451 36 HOH HOH . G 4 HOH A 52 452 37 HOH HOH . G 4 HOH A 53 453 40 HOH HOH . G 4 HOH A 54 454 42 HOH HOH . G 4 HOH A 55 455 44 HOH HOH . G 4 HOH A 56 456 45 HOH HOH . G 4 HOH A 57 457 48 HOH HOH . G 4 HOH A 58 458 49 HOH HOH . G 4 HOH A 59 459 50 HOH HOH . G 4 HOH A 60 460 51 HOH HOH . G 4 HOH A 61 461 52 HOH HOH . G 4 HOH A 62 462 53 HOH HOH . G 4 HOH A 63 463 54 HOH HOH . G 4 HOH A 64 464 55 HOH HOH . G 4 HOH A 65 465 57 HOH HOH . G 4 HOH A 66 466 58 HOH HOH . G 4 HOH A 67 467 59 HOH HOH . G 4 HOH A 68 468 60 HOH HOH . G 4 HOH A 69 469 61 HOH HOH . G 4 HOH A 70 470 64 HOH HOH . G 4 HOH A 71 471 65 HOH HOH . G 4 HOH A 72 472 66 HOH HOH . G 4 HOH A 73 473 67 HOH HOH . G 4 HOH A 74 474 68 HOH HOH . G 4 HOH A 75 475 69 HOH HOH . G 4 HOH A 76 476 70 HOH HOH . G 4 HOH A 77 477 71 HOH HOH . G 4 HOH A 78 478 72 HOH HOH . G 4 HOH A 79 479 73 HOH HOH . G 4 HOH A 80 480 74 HOH HOH . G 4 HOH A 81 481 75 HOH HOH . G 4 HOH A 82 482 76 HOH HOH . G 4 HOH A 83 483 78 HOH HOH . G 4 HOH A 84 484 81 HOH HOH . G 4 HOH A 85 485 83 HOH HOH . G 4 HOH A 86 486 85 HOH HOH . G 4 HOH A 87 487 100 HOH HOH . G 4 HOH A 88 488 102 HOH HOH . G 4 HOH A 89 489 103 HOH HOH . G 4 HOH A 90 490 106 HOH HOH . G 4 HOH A 91 491 108 HOH HOH . G 4 HOH A 92 492 110 HOH HOH . G 4 HOH A 93 493 111 HOH HOH . G 4 HOH A 94 494 114 HOH HOH . G 4 HOH A 95 495 116 HOH HOH . G 4 HOH A 96 496 117 HOH HOH . G 4 HOH A 97 497 121 HOH HOH . G 4 HOH A 98 498 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DDQ . . . D 3 69.78 60.393 -19.51 1 45.7 ? N1 DDQ 303 A 1 HETATM 2 O O1 DDQ . . . D 3 69.685 61.217 -20.458 1 48.79 ? O1 DDQ 303 A 1 HETATM 3 C CM1 DDQ . . . D 3 70.829 59.408 -19.832 1 46.48 ? CM1 DDQ 303 A 1 HETATM 4 C C1 DDQ . . . D 3 70.133 61.117 -18.281 1 44.61 ? C1 DDQ 303 A 1 HETATM 5 C C2 DDQ . . . D 3 70.696 60.152 -17.235 1 43.01 ? C2 DDQ 303 A 1 HETATM 6 C C3 DDQ . . . D 3 70.79 60.818 -15.867 1 42.82 ? C3 DDQ 303 A 1 HETATM 7 C C4 DDQ . . . D 3 71.283 59.831 -14.816 1 42.71 ? C4 DDQ 303 A 1 HETATM 8 C C5 DDQ . . . D 3 71.42 60.472 -13.44 1 42.49 ? C5 DDQ 303 A 1 HETATM 9 C C6 DDQ . . . D 3 72.568 61.468 -13.384 1 43.3 ? C6 DDQ 303 A 1 HETATM 10 C C7 DDQ . . . D 3 72.821 61.908 -11.951 1 45.55 ? C7 DDQ 303 A 1 HETATM 11 C C8 DDQ . . . D 3 73.802 63.073 -11.837 1 46.68 ? C8 DDQ 303 A 1 HETATM 12 C C9 DDQ . . . D 3 74.895 62.765 -10.814 1 47.34 ? C9 DDQ 303 A 1 HETATM 13 C C10 DDQ . . . D 3 74.583 63.268 -9.423 1 47.65 ? C10 DDQ 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #