data_4XU5 # _model_server_result.job_id YS15-MWMygLIZ5u-pFv--Q _model_server_result.datetime_utc '2024-11-22 21:19:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xu5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4XU5 # _exptl.entry_id 4XU5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.282 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XU5 _cell.length_a 83.393 _cell.length_b 83.393 _cell.length_c 124.885 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XU5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -y+2,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 166.786 0 0 3 'crystal symmetry operation' 3_775 -x+y+2,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 83.393 144.440913 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 115 n n C1 H11 D10 sing 116 n n C1 H12 D10 sing 117 n n C1 H13 D10 sing 118 n n C2 C3 D10 sing 119 n n C2 H21 D10 sing 120 n n C2 H22 D10 sing 121 n n C3 C4 D10 sing 122 n n C3 H31 D10 sing 123 n n C3 H32 D10 sing 124 n n C4 C5 D10 sing 125 n n C4 H41 D10 sing 126 n n C4 H42 D10 sing 127 n n C5 C6 D10 sing 128 n n C5 H51 D10 sing 129 n n C5 H52 D10 sing 130 n n C6 C7 D10 sing 131 n n C6 H61 D10 sing 132 n n C6 H62 D10 sing 133 n n C7 C8 D10 sing 134 n n C7 H71 D10 sing 135 n n C7 H72 D10 sing 136 n n C8 C9 D10 sing 137 n n C8 H81 D10 sing 138 n n C8 H82 D10 sing 139 n n C9 C10 D10 sing 140 n n C9 H91 D10 sing 141 n n C9 H92 D10 sing 142 n n C10 H101 D10 sing 143 n n C10 H102 D10 sing 144 n n C10 H103 D10 sing 145 n n # _atom_sites.entry_id 4XU5 _atom_sites.fract_transf_matrix[1][1] 0.011991 _atom_sites.fract_transf_matrix[1][2] 0.006923 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LBR A 1 301 1 LBR 1br . C 3 D10 A 1 302 1 D10 10c . D 3 D10 A 1 303 2 D10 10c . E 3 D10 A 1 304 3 D10 10c . F 3 D10 A 1 305 4 D10 10c . G 3 D10 A 1 306 5 D10 10c . H 4 BOG A 1 307 1 BOG BOG . I 5 HOH A 1 401 11 HOH HOH . I 5 HOH A 2 402 14 HOH HOH . I 5 HOH A 3 403 39 HOH HOH . I 5 HOH A 4 404 19 HOH HOH . I 5 HOH A 5 405 22 HOH HOH . I 5 HOH A 6 406 1 HOH HOH . I 5 HOH A 7 407 29 HOH HOH . I 5 HOH A 8 408 41 HOH HOH . I 5 HOH A 9 409 30 HOH HOH . I 5 HOH A 10 410 2 HOH HOH . I 5 HOH A 11 411 3 HOH HOH . I 5 HOH A 12 412 4 HOH HOH . I 5 HOH A 13 413 5 HOH HOH . I 5 HOH A 14 414 6 HOH HOH . I 5 HOH A 15 415 7 HOH HOH . I 5 HOH A 16 416 8 HOH HOH . I 5 HOH A 17 417 9 HOH HOH . I 5 HOH A 18 418 10 HOH HOH . I 5 HOH A 19 419 12 HOH HOH . I 5 HOH A 20 420 13 HOH HOH . I 5 HOH A 21 421 15 HOH HOH . I 5 HOH A 22 422 16 HOH HOH . I 5 HOH A 23 423 17 HOH HOH . I 5 HOH A 24 424 18 HOH HOH . I 5 HOH A 25 425 20 HOH HOH . I 5 HOH A 26 426 21 HOH HOH . I 5 HOH A 27 427 23 HOH HOH . I 5 HOH A 28 428 25 HOH HOH . I 5 HOH A 29 429 26 HOH HOH . I 5 HOH A 30 430 27 HOH HOH . I 5 HOH A 31 431 28 HOH HOH . I 5 HOH A 32 432 31 HOH HOH . I 5 HOH A 33 433 32 HOH HOH . I 5 HOH A 34 434 33 HOH HOH . I 5 HOH A 35 435 34 HOH HOH . I 5 HOH A 36 436 35 HOH HOH . I 5 HOH A 37 437 36 HOH HOH . I 5 HOH A 38 438 37 HOH HOH . I 5 HOH A 39 439 38 HOH HOH . I 5 HOH A 40 440 40 HOH HOH . I 5 HOH A 41 441 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . D 3 92.738 36.482 -7.04 1 49.94 ? C1 D10 303 A 1 HETATM 2 C C2 D10 . . . D 3 93.236 37.134 -5.782 1 51.01 ? C2 D10 303 A 1 HETATM 3 C C3 D10 . . . D 3 92.759 36.68 -4.433 1 51.41 ? C3 D10 303 A 1 HETATM 4 C C4 D10 . . . D 3 93.586 37.078 -3.242 1 51.99 ? C4 D10 303 A 1 HETATM 5 C C5 D10 . . . D 3 93.056 36.962 -1.847 1 52.04 ? C5 D10 303 A 1 HETATM 6 C C6 D10 . . . D 3 93.639 35.902 -0.965 1 52.71 ? C6 D10 303 A 1 HETATM 7 C C7 D10 . . . D 3 94.032 36.245 0.429 1 53.38 ? C7 D10 303 A 1 HETATM 8 C C8 D10 . . . D 3 94.181 35.11 1.382 1 54.01 ? C8 D10 303 A 1 HETATM 9 C C9 D10 . . . D 3 94.74 35.382 2.733 1 54.74 ? C9 D10 303 A 1 HETATM 10 C C10 D10 . . . D 3 94.712 34.266 3.721 1 56.2 ? C10 D10 303 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #