data_4XU5 # _model_server_result.job_id dsPlueoHO7OCPOgmfsar-A _model_server_result.datetime_utc '2024-11-22 21:21:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xu5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 4XU5 # _exptl.entry_id 4XU5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XU5 _cell.length_a 83.393 _cell.length_b 83.393 _cell.length_c 124.885 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XU5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -y+2,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 166.786 0 0 3 'crystal symmetry operation' 3_775 -x+y+2,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 83.393 144.440913 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 54 n n C1 C2 BOG sing 55 n n C1 O5 BOG sing 56 n n C1 H1 BOG sing 57 n n O1 C1' BOG sing 58 n n C2 O2 BOG sing 59 n n C2 C3 BOG sing 60 n n C2 H2 BOG sing 61 n n O2 HO2 BOG sing 62 n n C3 O3 BOG sing 63 n n C3 C4 BOG sing 64 n n C3 H3 BOG sing 65 n n O3 HO3 BOG sing 66 n n C4 O4 BOG sing 67 n n C4 C5 BOG sing 68 n n C4 H4 BOG sing 69 n n O4 HO4 BOG sing 70 n n C5 O5 BOG sing 71 n n C5 C6 BOG sing 72 n n C5 H5 BOG sing 73 n n C6 O6 BOG sing 74 n n C6 H61 BOG sing 75 n n C6 H62 BOG sing 76 n n O6 HO6 BOG sing 77 n n C1' C2' BOG sing 78 n n C1' "H1'1" BOG sing 79 n n C1' "H1'2" BOG sing 80 n n C2' C3' BOG sing 81 n n C2' "H2'1" BOG sing 82 n n C2' "H2'2" BOG sing 83 n n C3' C4' BOG sing 84 n n C3' "H3'1" BOG sing 85 n n C3' "H3'2" BOG sing 86 n n C4' C5' BOG sing 87 n n C4' "H4'1" BOG sing 88 n n C4' "H4'2" BOG sing 89 n n C5' C6' BOG sing 90 n n C5' "H5'1" BOG sing 91 n n C5' "H5'2" BOG sing 92 n n C6' C7' BOG sing 93 n n C6' "H6'1" BOG sing 94 n n C6' "H6'2" BOG sing 95 n n C7' C8' BOG sing 96 n n C7' "H7'1" BOG sing 97 n n C7' "H7'2" BOG sing 98 n n C8' "H8'1" BOG sing 99 n n C8' "H8'2" BOG sing 100 n n C8' "H8'3" BOG sing 101 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4XU5 _atom_sites.fract_transf_matrix[1][1] 0.011991 _atom_sites.fract_transf_matrix[1][2] 0.006923 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LBR A 1 301 1 LBR 1br . C 3 D10 A 1 302 1 D10 10c . D 3 D10 A 1 303 2 D10 10c . E 3 D10 A 1 304 3 D10 10c . F 3 D10 A 1 305 4 D10 10c . G 3 D10 A 1 306 5 D10 10c . H 4 BOG A 1 307 1 BOG BOG . I 5 HOH A 1 401 11 HOH HOH . I 5 HOH A 2 402 14 HOH HOH . I 5 HOH A 3 403 39 HOH HOH . I 5 HOH A 4 404 19 HOH HOH . I 5 HOH A 5 405 22 HOH HOH . I 5 HOH A 6 406 1 HOH HOH . I 5 HOH A 7 407 29 HOH HOH . I 5 HOH A 8 408 41 HOH HOH . I 5 HOH A 9 409 30 HOH HOH . I 5 HOH A 10 410 2 HOH HOH . I 5 HOH A 11 411 3 HOH HOH . I 5 HOH A 12 412 4 HOH HOH . I 5 HOH A 13 413 5 HOH HOH . I 5 HOH A 14 414 6 HOH HOH . I 5 HOH A 15 415 7 HOH HOH . I 5 HOH A 16 416 8 HOH HOH . I 5 HOH A 17 417 9 HOH HOH . I 5 HOH A 18 418 10 HOH HOH . I 5 HOH A 19 419 12 HOH HOH . I 5 HOH A 20 420 13 HOH HOH . I 5 HOH A 21 421 15 HOH HOH . I 5 HOH A 22 422 16 HOH HOH . I 5 HOH A 23 423 17 HOH HOH . I 5 HOH A 24 424 18 HOH HOH . I 5 HOH A 25 425 20 HOH HOH . I 5 HOH A 26 426 21 HOH HOH . I 5 HOH A 27 427 23 HOH HOH . I 5 HOH A 28 428 25 HOH HOH . I 5 HOH A 29 429 26 HOH HOH . I 5 HOH A 30 430 27 HOH HOH . I 5 HOH A 31 431 28 HOH HOH . I 5 HOH A 32 432 31 HOH HOH . I 5 HOH A 33 433 32 HOH HOH . I 5 HOH A 34 434 33 HOH HOH . I 5 HOH A 35 435 34 HOH HOH . I 5 HOH A 36 436 35 HOH HOH . I 5 HOH A 37 437 36 HOH HOH . I 5 HOH A 38 438 37 HOH HOH . I 5 HOH A 39 439 38 HOH HOH . I 5 HOH A 40 440 40 HOH HOH . I 5 HOH A 41 441 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . H 4 65.997 27.445 7.474 1 46.99 ? C1 BOG 307 A 1 HETATM 2 O O1 BOG . . . H 4 66.922 27.595 6.44 1 46.06 ? O1 BOG 307 A 1 HETATM 3 C C2 BOG . . . H 4 66.638 27.12 8.818 1 47.73 ? C2 BOG 307 A 1 HETATM 4 O O2 BOG . . . H 4 67.257 25.857 8.792 1 47.97 ? O2 BOG 307 A 1 HETATM 5 C C3 BOG . . . H 4 65.589 27.132 9.914 1 48.78 ? C3 BOG 307 A 1 HETATM 6 O O3 BOG . . . H 4 66.251 27.114 11.159 1 49.47 ? O3 BOG 307 A 1 HETATM 7 C C4 BOG . . . H 4 64.684 28.352 9.832 1 48.68 ? C4 BOG 307 A 1 HETATM 8 O O4 BOG . . . H 4 63.578 28.236 10.688 1 49.71 ? O4 BOG 307 A 1 HETATM 9 C C5 BOG . . . H 4 64.204 28.548 8.41 1 47.86 ? C5 BOG 307 A 1 HETATM 10 O O5 BOG . . . H 4 65.337 28.668 7.598 1 46.93 ? O5 BOG 307 A 1 HETATM 11 C C6 BOG . . . H 4 63.391 29.802 8.238 1 47.76 ? C6 BOG 307 A 1 HETATM 12 O O6 BOG . . . H 4 64.187 30.912 8.571 1 47.45 ? O6 BOG 307 A 1 HETATM 13 C C1' BOG . . . H 4 66.455 27.199 5.166 1 45.64 ? C1' BOG 307 A 1 HETATM 14 C C2' BOG . . . H 4 66.483 28.393 4.255 1 44.83 ? C2' BOG 307 A 1 HETATM 15 C C3' BOG . . . H 4 67.893 28.91 4.155 1 44.23 ? C3' BOG 307 A 1 HETATM 16 C C4' BOG . . . H 4 67.874 30.328 3.641 1 43.64 ? C4' BOG 307 A 1 HETATM 17 C C5' BOG . . . H 4 69.237 30.949 3.723 1 43.19 ? C5' BOG 307 A 1 HETATM 18 C C6' BOG . . . H 4 70.159 30.266 2.771 1 42.7 ? C6' BOG 307 A 1 HETATM 19 C C7' BOG . . . H 4 71.105 31.289 2.193 1 42.04 ? C7' BOG 307 A 1 HETATM 20 C C8' BOG . . . H 4 72.414 31.179 2.897 1 42.15 ? C8' BOG 307 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #