data_4XU6 # _model_server_result.job_id F66m_TAYJ4G151ym4Lu4hg _model_server_result.datetime_utc '2024-11-23 01:33:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4XU6 # _exptl.entry_id 4XU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XU6 _cell.length_a 85.596 _cell.length_b 85.596 _cell.length_c 126.12 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 54 n n C1 C2 BOG sing 55 n n C1 O5 BOG sing 56 n n C1 H1 BOG sing 57 n n O1 C1' BOG sing 58 n n C2 O2 BOG sing 59 n n C2 C3 BOG sing 60 n n C2 H2 BOG sing 61 n n O2 HO2 BOG sing 62 n n C3 O3 BOG sing 63 n n C3 C4 BOG sing 64 n n C3 H3 BOG sing 65 n n O3 HO3 BOG sing 66 n n C4 O4 BOG sing 67 n n C4 C5 BOG sing 68 n n C4 H4 BOG sing 69 n n O4 HO4 BOG sing 70 n n C5 O5 BOG sing 71 n n C5 C6 BOG sing 72 n n C5 H5 BOG sing 73 n n C6 O6 BOG sing 74 n n C6 H61 BOG sing 75 n n C6 H62 BOG sing 76 n n O6 HO6 BOG sing 77 n n C1' C2' BOG sing 78 n n C1' "H1'1" BOG sing 79 n n C1' "H1'2" BOG sing 80 n n C2' C3' BOG sing 81 n n C2' "H2'1" BOG sing 82 n n C2' "H2'2" BOG sing 83 n n C3' C4' BOG sing 84 n n C3' "H3'1" BOG sing 85 n n C3' "H3'2" BOG sing 86 n n C4' C5' BOG sing 87 n n C4' "H4'1" BOG sing 88 n n C4' "H4'2" BOG sing 89 n n C5' C6' BOG sing 90 n n C5' "H5'1" BOG sing 91 n n C5' "H5'2" BOG sing 92 n n C6' C7' BOG sing 93 n n C6' "H6'1" BOG sing 94 n n C6' "H6'2" BOG sing 95 n n C7' C8' BOG sing 96 n n C7' "H7'1" BOG sing 97 n n C7' "H7'2" BOG sing 98 n n C8' "H8'1" BOG sing 99 n n C8' "H8'2" BOG sing 100 n n C8' "H8'3" BOG sing 101 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4XU6 _atom_sites.fract_transf_matrix[1][1] 0.011683 _atom_sites.fract_transf_matrix[1][2] 0.006745 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 301 1 BOG BOG . C 2 BOG A 1 302 2 BOG BOG . D 2 BOG A 1 303 3 BOG BOG . E 3 TDA A 1 304 1 TDA fat . F 3 TDA A 1 305 2 TDA fat . G 4 HOH A 1 401 84 HOH HOH . G 4 HOH A 2 402 33 HOH HOH . G 4 HOH A 3 403 105 HOH HOH . G 4 HOH A 4 404 56 HOH HOH . G 4 HOH A 5 405 134 HOH HOH . G 4 HOH A 6 406 58 HOH HOH . G 4 HOH A 7 407 92 HOH HOH . G 4 HOH A 8 408 8 HOH HOH . G 4 HOH A 9 409 53 HOH HOH . G 4 HOH A 10 410 40 HOH HOH . G 4 HOH A 11 411 23 HOH HOH . G 4 HOH A 12 412 22 HOH HOH . G 4 HOH A 13 413 35 HOH HOH . G 4 HOH A 14 414 45 HOH HOH . G 4 HOH A 15 415 161 HOH HOH . G 4 HOH A 16 416 42 HOH HOH . G 4 HOH A 17 417 77 HOH HOH . G 4 HOH A 18 418 18 HOH HOH . G 4 HOH A 19 419 2 HOH HOH . G 4 HOH A 20 420 88 HOH HOH . G 4 HOH A 21 421 148 HOH HOH . G 4 HOH A 22 422 128 HOH HOH . G 4 HOH A 23 423 109 HOH HOH . G 4 HOH A 24 424 165 HOH HOH . G 4 HOH A 25 425 31 HOH HOH . G 4 HOH A 26 426 86 HOH HOH . G 4 HOH A 27 427 108 HOH HOH . G 4 HOH A 28 428 125 HOH HOH . G 4 HOH A 29 429 101 HOH HOH . G 4 HOH A 30 430 74 HOH HOH . G 4 HOH A 31 431 160 HOH HOH . G 4 HOH A 32 432 156 HOH HOH . G 4 HOH A 33 433 82 HOH HOH . G 4 HOH A 34 434 103 HOH HOH . G 4 HOH A 35 435 1 HOH HOH . G 4 HOH A 36 436 3 HOH HOH . G 4 HOH A 37 437 4 HOH HOH . G 4 HOH A 38 438 5 HOH HOH . G 4 HOH A 39 439 6 HOH HOH . G 4 HOH A 40 440 7 HOH HOH . G 4 HOH A 41 441 9 HOH HOH . G 4 HOH A 42 442 10 HOH HOH . G 4 HOH A 43 443 11 HOH HOH . G 4 HOH A 44 444 12 HOH HOH . G 4 HOH A 45 445 13 HOH HOH . G 4 HOH A 46 446 14 HOH HOH . G 4 HOH A 47 447 15 HOH HOH . G 4 HOH A 48 448 16 HOH HOH . G 4 HOH A 49 449 17 HOH HOH . G 4 HOH A 50 450 19 HOH HOH . G 4 HOH A 51 451 20 HOH HOH . G 4 HOH A 52 452 21 HOH HOH . G 4 HOH A 53 453 25 HOH HOH . G 4 HOH A 54 454 26 HOH HOH . G 4 HOH A 55 455 28 HOH HOH . G 4 HOH A 56 456 29 HOH HOH . G 4 HOH A 57 457 30 HOH HOH . G 4 HOH A 58 458 32 HOH HOH . G 4 HOH A 59 459 34 HOH HOH . G 4 HOH A 60 460 36 HOH HOH . G 4 HOH A 61 461 37 HOH HOH . G 4 HOH A 62 462 38 HOH HOH . G 4 HOH A 63 463 39 HOH HOH . G 4 HOH A 64 464 41 HOH HOH . G 4 HOH A 65 465 43 HOH HOH . G 4 HOH A 66 466 44 HOH HOH . G 4 HOH A 67 467 46 HOH HOH . G 4 HOH A 68 468 48 HOH HOH . G 4 HOH A 69 469 49 HOH HOH . G 4 HOH A 70 470 51 HOH HOH . G 4 HOH A 71 471 52 HOH HOH . G 4 HOH A 72 472 54 HOH HOH . G 4 HOH A 73 473 55 HOH HOH . G 4 HOH A 74 474 57 HOH HOH . G 4 HOH A 75 475 59 HOH HOH . G 4 HOH A 76 476 60 HOH HOH . G 4 HOH A 77 477 62 HOH HOH . G 4 HOH A 78 478 63 HOH HOH . G 4 HOH A 79 479 64 HOH HOH . G 4 HOH A 80 480 65 HOH HOH . G 4 HOH A 81 481 66 HOH HOH . G 4 HOH A 82 482 67 HOH HOH . G 4 HOH A 83 483 69 HOH HOH . G 4 HOH A 84 484 71 HOH HOH . G 4 HOH A 85 485 72 HOH HOH . G 4 HOH A 86 486 75 HOH HOH . G 4 HOH A 87 487 78 HOH HOH . G 4 HOH A 88 488 79 HOH HOH . G 4 HOH A 89 489 83 HOH HOH . G 4 HOH A 90 490 85 HOH HOH . G 4 HOH A 91 491 87 HOH HOH . G 4 HOH A 92 492 89 HOH HOH . G 4 HOH A 93 493 94 HOH HOH . G 4 HOH A 94 494 95 HOH HOH . G 4 HOH A 95 495 96 HOH HOH . G 4 HOH A 96 496 97 HOH HOH . G 4 HOH A 97 497 99 HOH HOH . G 4 HOH A 98 498 100 HOH HOH . G 4 HOH A 99 499 102 HOH HOH . G 4 HOH A 100 500 104 HOH HOH . G 4 HOH A 101 501 106 HOH HOH . G 4 HOH A 102 502 107 HOH HOH . G 4 HOH A 103 503 110 HOH HOH . G 4 HOH A 104 504 111 HOH HOH . G 4 HOH A 105 505 118 HOH HOH . G 4 HOH A 106 506 123 HOH HOH . G 4 HOH A 107 507 126 HOH HOH . G 4 HOH A 108 508 129 HOH HOH . G 4 HOH A 109 509 133 HOH HOH . G 4 HOH A 110 510 135 HOH HOH . G 4 HOH A 111 511 137 HOH HOH . G 4 HOH A 112 512 139 HOH HOH . G 4 HOH A 113 513 142 HOH HOH . G 4 HOH A 114 514 143 HOH HOH . G 4 HOH A 115 515 144 HOH HOH . G 4 HOH A 116 516 146 HOH HOH . G 4 HOH A 117 517 150 HOH HOH . G 4 HOH A 118 518 153 HOH HOH . G 4 HOH A 119 519 154 HOH HOH . G 4 HOH A 120 520 155 HOH HOH . G 4 HOH A 121 521 158 HOH HOH . G 4 HOH A 122 522 159 HOH HOH . G 4 HOH A 123 523 163 HOH HOH . G 4 HOH A 124 524 166 HOH HOH . G 4 HOH A 125 525 167 HOH HOH . G 4 HOH A 126 526 168 HOH HOH . G 4 HOH A 127 527 169 HOH HOH . G 4 HOH A 128 528 170 HOH HOH . G 4 HOH A 129 529 171 HOH HOH . G 4 HOH A 130 530 172 HOH HOH . G 4 HOH A 131 531 173 HOH HOH . G 4 HOH A 132 532 175 HOH HOH . G 4 HOH A 133 533 177 HOH HOH . G 4 HOH A 134 534 178 HOH HOH . G 4 HOH A 135 535 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . D 2 4.702 -3.032 3.437 1 49.28 ? C1 BOG 303 A 1 HETATM 2 O O1 BOG . . . D 2 4.387 -2.614 2.116 1 55.14 ? O1 BOG 303 A 1 HETATM 3 C C2 BOG . . . D 2 4.044 -4.373 3.708 1 48.22 ? C2 BOG 303 A 1 HETATM 4 O O2 BOG . . . D 2 2.644 -4.329 3.396 1 57.25 ? O2 BOG 303 A 1 HETATM 5 C C3 BOG . . . D 2 4.246 -4.722 5.171 1 57.22 ? C3 BOG 303 A 1 HETATM 6 O O3 BOG . . . D 2 3.752 -6.049 5.403 1 59.21 ? O3 BOG 303 A 1 HETATM 7 C C4 BOG . . . D 2 5.722 -4.688 5.553 1 54.69 ? C4 BOG 303 A 1 HETATM 8 O O4 BOG . . . D 2 5.844 -4.375 6.947 1 60.99 ? O4 BOG 303 A 1 HETATM 9 C C5 BOG . . . D 2 6.61 -3.708 4.784 1 49.27 ? C5 BOG 303 A 1 HETATM 10 O O5 BOG . . . D 2 6.108 -3.228 3.53 1 51.9 ? O5 BOG 303 A 1 HETATM 11 C C6 BOG . . . D 2 7.871 -4.491 4.484 1 42.75 ? C6 BOG 303 A 1 HETATM 12 O O6 BOG . . . D 2 7.526 -5.857 4.217 1 59.96 ? O6 BOG 303 A 1 HETATM 13 C C1' BOG . . . D 2 5.57 -2.332 1.371 1 44.44 ? C1' BOG 303 A 1 HETATM 14 C C2' BOG . . . D 2 5.172 -1.507 0.163 1 40.4 ? C2' BOG 303 A 1 HETATM 15 C C3' BOG . . . D 2 5.964 -1.953 -1.05 1 36.31 ? C3' BOG 303 A 1 HETATM 16 C C4' BOG . . . D 2 5.166 -1.649 -2.31 1 40.12 ? C4' BOG 303 A 1 HETATM 17 C C5' BOG . . . D 2 5.763 -0.469 -3.063 1 33.95 ? C5' BOG 303 A 1 HETATM 18 C C6' BOG . . . D 2 4.749 0.126 -4.02 1 34.38 ? C6' BOG 303 A 1 HETATM 19 C C7' BOG . . . D 2 5.328 1.342 -4.728 1 35.53 ? C7' BOG 303 A 1 HETATM 20 C C8' BOG . . . D 2 4.29 1.948 -5.653 1 35.15 ? C8' BOG 303 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #