data_4XU6
#
_model_server_result.job_id            4uZO01Rah1jxbNFHyxa1Pg 
_model_server_result.datetime_utc      '2024-11-04 22:36:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xu6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    4XU6 
#
_exptl.entry_id    4XU6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              214.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-TRIDECANOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4XU6 
_cell.length_a            85.596 
_cell.length_b            85.596 
_cell.length_c            126.12 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XU6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C13 H26 O2' 
_chem_comp.formula_weight    214.344 
_chem_comp.id                TDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-TRIDECANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C21 TDA sing 298 n n 
O21 H21 TDA sing 299 n n 
O22 C21 TDA doub 300 n n 
C21 C22 TDA sing 301 n n 
C22 C23 TDA sing 302 n n 
C22 H222 TDA sing 303 n n 
C22 H221 TDA sing 304 n n 
C23 C24 TDA sing 305 n n 
C23 H232 TDA sing 306 n n 
C23 H231 TDA sing 307 n n 
C24 C25 TDA sing 308 n n 
C24 H242 TDA sing 309 n n 
C24 H241 TDA sing 310 n n 
C25 C26 TDA sing 311 n n 
C25 H252 TDA sing 312 n n 
C25 H251 TDA sing 313 n n 
C26 C27 TDA sing 314 n n 
C26 H262 TDA sing 315 n n 
C26 H261 TDA sing 316 n n 
C27 C28 TDA sing 317 n n 
C27 H272 TDA sing 318 n n 
C27 H271 TDA sing 319 n n 
C28 C29 TDA sing 320 n n 
C28 H282 TDA sing 321 n n 
C28 H281 TDA sing 322 n n 
C29 C30 TDA sing 323 n n 
C29 H292 TDA sing 324 n n 
C29 H291 TDA sing 325 n n 
C30 C31 TDA sing 326 n n 
C30 H302 TDA sing 327 n n 
C30 H301 TDA sing 328 n n 
C31 C32 TDA sing 329 n n 
C31 H312 TDA sing 330 n n 
C31 H311 TDA sing 331 n n 
C32 C33 TDA sing 332 n n 
C32 H322 TDA sing 333 n n 
C32 H321 TDA sing 334 n n 
C33 H333 TDA sing 335 n n 
C33 H332 TDA sing 336 n n 
C33 H331 TDA sing 337 n n 
#
_atom_sites.entry_id                     4XU6 
_atom_sites.fract_transf_matrix[1][1]    0.011683 
_atom_sites.fract_transf_matrix[1][2]    0.006745 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01349 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007929 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 301 1 BOG BOG . 
C 2 BOG A 1 302 2 BOG BOG . 
D 2 BOG A 1 303 3 BOG BOG . 
E 3 TDA A 1 304 1 TDA fat . 
F 3 TDA A 1 305 2 TDA fat . 
G 4 HOH A 1 401 84 HOH HOH . 
G 4 HOH A 2 402 33 HOH HOH . 
G 4 HOH A 3 403 105 HOH HOH . 
G 4 HOH A 4 404 56 HOH HOH . 
G 4 HOH A 5 405 134 HOH HOH . 
G 4 HOH A 6 406 58 HOH HOH . 
G 4 HOH A 7 407 92 HOH HOH . 
G 4 HOH A 8 408 8 HOH HOH . 
G 4 HOH A 9 409 53 HOH HOH . 
G 4 HOH A 10 410 40 HOH HOH . 
G 4 HOH A 11 411 23 HOH HOH . 
G 4 HOH A 12 412 22 HOH HOH . 
G 4 HOH A 13 413 35 HOH HOH . 
G 4 HOH A 14 414 45 HOH HOH . 
G 4 HOH A 15 415 161 HOH HOH . 
G 4 HOH A 16 416 42 HOH HOH . 
G 4 HOH A 17 417 77 HOH HOH . 
G 4 HOH A 18 418 18 HOH HOH . 
G 4 HOH A 19 419 2 HOH HOH . 
G 4 HOH A 20 420 88 HOH HOH . 
G 4 HOH A 21 421 148 HOH HOH . 
G 4 HOH A 22 422 128 HOH HOH . 
G 4 HOH A 23 423 109 HOH HOH . 
G 4 HOH A 24 424 165 HOH HOH . 
G 4 HOH A 25 425 31 HOH HOH . 
G 4 HOH A 26 426 86 HOH HOH . 
G 4 HOH A 27 427 108 HOH HOH . 
G 4 HOH A 28 428 125 HOH HOH . 
G 4 HOH A 29 429 101 HOH HOH . 
G 4 HOH A 30 430 74 HOH HOH . 
G 4 HOH A 31 431 160 HOH HOH . 
G 4 HOH A 32 432 156 HOH HOH . 
G 4 HOH A 33 433 82 HOH HOH . 
G 4 HOH A 34 434 103 HOH HOH . 
G 4 HOH A 35 435 1 HOH HOH . 
G 4 HOH A 36 436 3 HOH HOH . 
G 4 HOH A 37 437 4 HOH HOH . 
G 4 HOH A 38 438 5 HOH HOH . 
G 4 HOH A 39 439 6 HOH HOH . 
G 4 HOH A 40 440 7 HOH HOH . 
G 4 HOH A 41 441 9 HOH HOH . 
G 4 HOH A 42 442 10 HOH HOH . 
G 4 HOH A 43 443 11 HOH HOH . 
G 4 HOH A 44 444 12 HOH HOH . 
G 4 HOH A 45 445 13 HOH HOH . 
G 4 HOH A 46 446 14 HOH HOH . 
G 4 HOH A 47 447 15 HOH HOH . 
G 4 HOH A 48 448 16 HOH HOH . 
G 4 HOH A 49 449 17 HOH HOH . 
G 4 HOH A 50 450 19 HOH HOH . 
G 4 HOH A 51 451 20 HOH HOH . 
G 4 HOH A 52 452 21 HOH HOH . 
G 4 HOH A 53 453 25 HOH HOH . 
G 4 HOH A 54 454 26 HOH HOH . 
G 4 HOH A 55 455 28 HOH HOH . 
G 4 HOH A 56 456 29 HOH HOH . 
G 4 HOH A 57 457 30 HOH HOH . 
G 4 HOH A 58 458 32 HOH HOH . 
G 4 HOH A 59 459 34 HOH HOH . 
G 4 HOH A 60 460 36 HOH HOH . 
G 4 HOH A 61 461 37 HOH HOH . 
G 4 HOH A 62 462 38 HOH HOH . 
G 4 HOH A 63 463 39 HOH HOH . 
G 4 HOH A 64 464 41 HOH HOH . 
G 4 HOH A 65 465 43 HOH HOH . 
G 4 HOH A 66 466 44 HOH HOH . 
G 4 HOH A 67 467 46 HOH HOH . 
G 4 HOH A 68 468 48 HOH HOH . 
G 4 HOH A 69 469 49 HOH HOH . 
G 4 HOH A 70 470 51 HOH HOH . 
G 4 HOH A 71 471 52 HOH HOH . 
G 4 HOH A 72 472 54 HOH HOH . 
G 4 HOH A 73 473 55 HOH HOH . 
G 4 HOH A 74 474 57 HOH HOH . 
G 4 HOH A 75 475 59 HOH HOH . 
G 4 HOH A 76 476 60 HOH HOH . 
G 4 HOH A 77 477 62 HOH HOH . 
G 4 HOH A 78 478 63 HOH HOH . 
G 4 HOH A 79 479 64 HOH HOH . 
G 4 HOH A 80 480 65 HOH HOH . 
G 4 HOH A 81 481 66 HOH HOH . 
G 4 HOH A 82 482 67 HOH HOH . 
G 4 HOH A 83 483 69 HOH HOH . 
G 4 HOH A 84 484 71 HOH HOH . 
G 4 HOH A 85 485 72 HOH HOH . 
G 4 HOH A 86 486 75 HOH HOH . 
G 4 HOH A 87 487 78 HOH HOH . 
G 4 HOH A 88 488 79 HOH HOH . 
G 4 HOH A 89 489 83 HOH HOH . 
G 4 HOH A 90 490 85 HOH HOH . 
G 4 HOH A 91 491 87 HOH HOH . 
G 4 HOH A 92 492 89 HOH HOH . 
G 4 HOH A 93 493 94 HOH HOH . 
G 4 HOH A 94 494 95 HOH HOH . 
G 4 HOH A 95 495 96 HOH HOH . 
G 4 HOH A 96 496 97 HOH HOH . 
G 4 HOH A 97 497 99 HOH HOH . 
G 4 HOH A 98 498 100 HOH HOH . 
G 4 HOH A 99 499 102 HOH HOH . 
G 4 HOH A 100 500 104 HOH HOH . 
G 4 HOH A 101 501 106 HOH HOH . 
G 4 HOH A 102 502 107 HOH HOH . 
G 4 HOH A 103 503 110 HOH HOH . 
G 4 HOH A 104 504 111 HOH HOH . 
G 4 HOH A 105 505 118 HOH HOH . 
G 4 HOH A 106 506 123 HOH HOH . 
G 4 HOH A 107 507 126 HOH HOH . 
G 4 HOH A 108 508 129 HOH HOH . 
G 4 HOH A 109 509 133 HOH HOH . 
G 4 HOH A 110 510 135 HOH HOH . 
G 4 HOH A 111 511 137 HOH HOH . 
G 4 HOH A 112 512 139 HOH HOH . 
G 4 HOH A 113 513 142 HOH HOH . 
G 4 HOH A 114 514 143 HOH HOH . 
G 4 HOH A 115 515 144 HOH HOH . 
G 4 HOH A 116 516 146 HOH HOH . 
G 4 HOH A 117 517 150 HOH HOH . 
G 4 HOH A 118 518 153 HOH HOH . 
G 4 HOH A 119 519 154 HOH HOH . 
G 4 HOH A 120 520 155 HOH HOH . 
G 4 HOH A 121 521 158 HOH HOH . 
G 4 HOH A 122 522 159 HOH HOH . 
G 4 HOH A 123 523 163 HOH HOH . 
G 4 HOH A 124 524 166 HOH HOH . 
G 4 HOH A 125 525 167 HOH HOH . 
G 4 HOH A 126 526 168 HOH HOH . 
G 4 HOH A 127 527 169 HOH HOH . 
G 4 HOH A 128 528 170 HOH HOH . 
G 4 HOH A 129 529 171 HOH HOH . 
G 4 HOH A 130 530 172 HOH HOH . 
G 4 HOH A 131 531 173 HOH HOH . 
G 4 HOH A 132 532 175 HOH HOH . 
G 4 HOH A 133 533 177 HOH HOH . 
G 4 HOH A 134 534 178 HOH HOH . 
G 4 HOH A 135 535 179 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 TDA . . . E 3 15.86 7.748 -20.279 1 38.27 ? O21 TDA 304 A 1 
HETATM 2 O O22 TDA . . . E 3 18.074 8.001 -20.95 1 39.98 ? O22 TDA 304 A 1 
HETATM 3 C C21 TDA . . . E 3 17.298 7.782 -20.019 1 32.23 ? C21 TDA 304 A 1 
HETATM 4 C C22 TDA . . . E 3 17.836 7.484 -18.65 1 27.69 ? C22 TDA 304 A 1 
HETATM 5 C C23 TDA . . . E 3 16.738 7.56 -17.585 1 27.84 ? C23 TDA 304 A 1 
HETATM 6 C C24 TDA . . . E 3 17.254 7.095 -16.223 1 28.3 ? C24 TDA 304 A 1 
HETATM 7 C C25 TDA . . . E 3 16.194 7.277 -15.135 1 25.32 ? C25 TDA 304 A 1 
HETATM 8 C C26 TDA . . . E 3 16.678 6.796 -13.77 1 31.04 ? C26 TDA 304 A 1 
HETATM 9 C C27 TDA . . . E 3 16.802 5.28 -13.81 1 30.3 ? C27 TDA 304 A 1 
HETATM 10 C C28 TDA . . . E 3 17.246 4.706 -12.484 1 35.45 ? C28 TDA 304 A 1 
HETATM 11 C C29 TDA . . . E 3 17.502 3.216 -12.642 1 34.42 ? C29 TDA 304 A 1 
HETATM 12 C C30 TDA . . . E 3 17.891 2.655 -11.287 1 32.27 ? C30 TDA 304 A 1 
HETATM 13 C C31 TDA . . . E 3 16.703 2.72 -10.339 1 34.74 ? C31 TDA 304 A 1 
HETATM 14 C C32 TDA . . . E 3 17.008 1.992 -9.036 1 34.82 ? C32 TDA 304 A 1 
HETATM 15 C C33 TDA . . . E 3 16.13 2.509 -7.904 1 34.63 ? C33 TDA 304 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#