data_4XU6 # _model_server_result.job_id m2PUbe2Tpnc4TBWlOhE7Kg _model_server_result.datetime_utc '2024-11-04 22:38:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 4XU6 # _exptl.entry_id 4XU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-TRIDECANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XU6 _cell.length_a 85.596 _cell.length_b 85.596 _cell.length_c 126.12 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C13 H26 O2' _chem_comp.formula_weight 214.344 _chem_comp.id TDA _chem_comp.mon_nstd_flag . _chem_comp.name 'N-TRIDECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C21 TDA sing 298 n n O21 H21 TDA sing 299 n n O22 C21 TDA doub 300 n n C21 C22 TDA sing 301 n n C22 C23 TDA sing 302 n n C22 H222 TDA sing 303 n n C22 H221 TDA sing 304 n n C23 C24 TDA sing 305 n n C23 H232 TDA sing 306 n n C23 H231 TDA sing 307 n n C24 C25 TDA sing 308 n n C24 H242 TDA sing 309 n n C24 H241 TDA sing 310 n n C25 C26 TDA sing 311 n n C25 H252 TDA sing 312 n n C25 H251 TDA sing 313 n n C26 C27 TDA sing 314 n n C26 H262 TDA sing 315 n n C26 H261 TDA sing 316 n n C27 C28 TDA sing 317 n n C27 H272 TDA sing 318 n n C27 H271 TDA sing 319 n n C28 C29 TDA sing 320 n n C28 H282 TDA sing 321 n n C28 H281 TDA sing 322 n n C29 C30 TDA sing 323 n n C29 H292 TDA sing 324 n n C29 H291 TDA sing 325 n n C30 C31 TDA sing 326 n n C30 H302 TDA sing 327 n n C30 H301 TDA sing 328 n n C31 C32 TDA sing 329 n n C31 H312 TDA sing 330 n n C31 H311 TDA sing 331 n n C32 C33 TDA sing 332 n n C32 H322 TDA sing 333 n n C32 H321 TDA sing 334 n n C33 H333 TDA sing 335 n n C33 H332 TDA sing 336 n n C33 H331 TDA sing 337 n n # _atom_sites.entry_id 4XU6 _atom_sites.fract_transf_matrix[1][1] 0.011683 _atom_sites.fract_transf_matrix[1][2] 0.006745 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 301 1 BOG BOG . C 2 BOG A 1 302 2 BOG BOG . D 2 BOG A 1 303 3 BOG BOG . E 3 TDA A 1 304 1 TDA fat . F 3 TDA A 1 305 2 TDA fat . G 4 HOH A 1 401 84 HOH HOH . G 4 HOH A 2 402 33 HOH HOH . G 4 HOH A 3 403 105 HOH HOH . G 4 HOH A 4 404 56 HOH HOH . G 4 HOH A 5 405 134 HOH HOH . G 4 HOH A 6 406 58 HOH HOH . G 4 HOH A 7 407 92 HOH HOH . G 4 HOH A 8 408 8 HOH HOH . G 4 HOH A 9 409 53 HOH HOH . G 4 HOH A 10 410 40 HOH HOH . G 4 HOH A 11 411 23 HOH HOH . G 4 HOH A 12 412 22 HOH HOH . G 4 HOH A 13 413 35 HOH HOH . G 4 HOH A 14 414 45 HOH HOH . G 4 HOH A 15 415 161 HOH HOH . G 4 HOH A 16 416 42 HOH HOH . G 4 HOH A 17 417 77 HOH HOH . G 4 HOH A 18 418 18 HOH HOH . G 4 HOH A 19 419 2 HOH HOH . G 4 HOH A 20 420 88 HOH HOH . G 4 HOH A 21 421 148 HOH HOH . G 4 HOH A 22 422 128 HOH HOH . G 4 HOH A 23 423 109 HOH HOH . G 4 HOH A 24 424 165 HOH HOH . G 4 HOH A 25 425 31 HOH HOH . G 4 HOH A 26 426 86 HOH HOH . G 4 HOH A 27 427 108 HOH HOH . G 4 HOH A 28 428 125 HOH HOH . G 4 HOH A 29 429 101 HOH HOH . G 4 HOH A 30 430 74 HOH HOH . G 4 HOH A 31 431 160 HOH HOH . G 4 HOH A 32 432 156 HOH HOH . G 4 HOH A 33 433 82 HOH HOH . G 4 HOH A 34 434 103 HOH HOH . G 4 HOH A 35 435 1 HOH HOH . G 4 HOH A 36 436 3 HOH HOH . G 4 HOH A 37 437 4 HOH HOH . G 4 HOH A 38 438 5 HOH HOH . G 4 HOH A 39 439 6 HOH HOH . G 4 HOH A 40 440 7 HOH HOH . G 4 HOH A 41 441 9 HOH HOH . G 4 HOH A 42 442 10 HOH HOH . G 4 HOH A 43 443 11 HOH HOH . G 4 HOH A 44 444 12 HOH HOH . G 4 HOH A 45 445 13 HOH HOH . G 4 HOH A 46 446 14 HOH HOH . G 4 HOH A 47 447 15 HOH HOH . G 4 HOH A 48 448 16 HOH HOH . G 4 HOH A 49 449 17 HOH HOH . G 4 HOH A 50 450 19 HOH HOH . G 4 HOH A 51 451 20 HOH HOH . G 4 HOH A 52 452 21 HOH HOH . G 4 HOH A 53 453 25 HOH HOH . G 4 HOH A 54 454 26 HOH HOH . G 4 HOH A 55 455 28 HOH HOH . G 4 HOH A 56 456 29 HOH HOH . G 4 HOH A 57 457 30 HOH HOH . G 4 HOH A 58 458 32 HOH HOH . G 4 HOH A 59 459 34 HOH HOH . G 4 HOH A 60 460 36 HOH HOH . G 4 HOH A 61 461 37 HOH HOH . G 4 HOH A 62 462 38 HOH HOH . G 4 HOH A 63 463 39 HOH HOH . G 4 HOH A 64 464 41 HOH HOH . G 4 HOH A 65 465 43 HOH HOH . G 4 HOH A 66 466 44 HOH HOH . G 4 HOH A 67 467 46 HOH HOH . G 4 HOH A 68 468 48 HOH HOH . G 4 HOH A 69 469 49 HOH HOH . G 4 HOH A 70 470 51 HOH HOH . G 4 HOH A 71 471 52 HOH HOH . G 4 HOH A 72 472 54 HOH HOH . G 4 HOH A 73 473 55 HOH HOH . G 4 HOH A 74 474 57 HOH HOH . G 4 HOH A 75 475 59 HOH HOH . G 4 HOH A 76 476 60 HOH HOH . G 4 HOH A 77 477 62 HOH HOH . G 4 HOH A 78 478 63 HOH HOH . G 4 HOH A 79 479 64 HOH HOH . G 4 HOH A 80 480 65 HOH HOH . G 4 HOH A 81 481 66 HOH HOH . G 4 HOH A 82 482 67 HOH HOH . G 4 HOH A 83 483 69 HOH HOH . G 4 HOH A 84 484 71 HOH HOH . G 4 HOH A 85 485 72 HOH HOH . G 4 HOH A 86 486 75 HOH HOH . G 4 HOH A 87 487 78 HOH HOH . G 4 HOH A 88 488 79 HOH HOH . G 4 HOH A 89 489 83 HOH HOH . G 4 HOH A 90 490 85 HOH HOH . G 4 HOH A 91 491 87 HOH HOH . G 4 HOH A 92 492 89 HOH HOH . G 4 HOH A 93 493 94 HOH HOH . G 4 HOH A 94 494 95 HOH HOH . G 4 HOH A 95 495 96 HOH HOH . G 4 HOH A 96 496 97 HOH HOH . G 4 HOH A 97 497 99 HOH HOH . G 4 HOH A 98 498 100 HOH HOH . G 4 HOH A 99 499 102 HOH HOH . G 4 HOH A 100 500 104 HOH HOH . G 4 HOH A 101 501 106 HOH HOH . G 4 HOH A 102 502 107 HOH HOH . G 4 HOH A 103 503 110 HOH HOH . G 4 HOH A 104 504 111 HOH HOH . G 4 HOH A 105 505 118 HOH HOH . G 4 HOH A 106 506 123 HOH HOH . G 4 HOH A 107 507 126 HOH HOH . G 4 HOH A 108 508 129 HOH HOH . G 4 HOH A 109 509 133 HOH HOH . G 4 HOH A 110 510 135 HOH HOH . G 4 HOH A 111 511 137 HOH HOH . G 4 HOH A 112 512 139 HOH HOH . G 4 HOH A 113 513 142 HOH HOH . G 4 HOH A 114 514 143 HOH HOH . G 4 HOH A 115 515 144 HOH HOH . G 4 HOH A 116 516 146 HOH HOH . G 4 HOH A 117 517 150 HOH HOH . G 4 HOH A 118 518 153 HOH HOH . G 4 HOH A 119 519 154 HOH HOH . G 4 HOH A 120 520 155 HOH HOH . G 4 HOH A 121 521 158 HOH HOH . G 4 HOH A 122 522 159 HOH HOH . G 4 HOH A 123 523 163 HOH HOH . G 4 HOH A 124 524 166 HOH HOH . G 4 HOH A 125 525 167 HOH HOH . G 4 HOH A 126 526 168 HOH HOH . G 4 HOH A 127 527 169 HOH HOH . G 4 HOH A 128 528 170 HOH HOH . G 4 HOH A 129 529 171 HOH HOH . G 4 HOH A 130 530 172 HOH HOH . G 4 HOH A 131 531 173 HOH HOH . G 4 HOH A 132 532 175 HOH HOH . G 4 HOH A 133 533 177 HOH HOH . G 4 HOH A 134 534 178 HOH HOH . G 4 HOH A 135 535 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 TDA . . . F 3 22.146 9.604 -20.277 1 37.19 ? C21 TDA 305 A 1 HETATM 2 C C22 TDA . . . F 3 22.661 10.297 -19.035 1 38.36 ? C22 TDA 305 A 1 HETATM 3 C C23 TDA . . . F 3 22.007 9.752 -17.774 1 35.46 ? C23 TDA 305 A 1 HETATM 4 C C24 TDA . . . F 3 22.457 10.565 -16.562 1 36.02 ? C24 TDA 305 A 1 HETATM 5 C C25 TDA . . . F 3 21.786 10.094 -15.279 1 37.9 ? C25 TDA 305 A 1 HETATM 6 C C26 TDA . . . F 3 21.908 11.137 -14.169 1 38.12 ? C26 TDA 305 A 1 HETATM 7 C C27 TDA . . . F 3 23.359 11.564 -13.983 1 42.15 ? C27 TDA 305 A 1 HETATM 8 C C28 TDA . . . F 3 23.466 12.735 -13.018 1 40.55 ? C28 TDA 305 A 1 HETATM 9 C C29 TDA . . . F 3 24.427 12.389 -11.89 1 50 ? C29 TDA 305 A 1 HETATM 10 C C30 TDA . . . F 3 25.817 12.094 -12.44 1 49.18 ? C30 TDA 305 A 1 HETATM 11 C C31 TDA . . . F 3 26.627 11.309 -11.415 1 45.73 ? C31 TDA 305 A 1 HETATM 12 C C32 TDA . . . F 3 26.527 11.951 -10.035 1 47.77 ? C32 TDA 305 A 1 HETATM 13 C C33 TDA . . . F 3 27.626 11.441 -9.111 1 46.75 ? C33 TDA 305 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #