data_4XUD
#
_model_server_result.job_id            SFps6D1K6t0yd2OQguMUmw 
_model_server_result.datetime_utc      '2024-11-22 20:37:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xud 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    4XUD 
#
_exptl.entry_id    4XUD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XUD 
_cell.length_a            43.812 
_cell.length_b            57.631 
_cell.length_c            98.249 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XUD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 144 A ASP 191 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc2 A OD2 ASP 172 A ASP 219 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc3 A OD1 ASN 173 A ASN 220 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc4 B O 43H . A 43H 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc5 B O5 43H . A 43H 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc6 C MG MG . A MG 302 1_555 F O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 341 n n 
N HN1 SAM sing 342 n n 
N HN2 SAM sing 343 n n 
CA C SAM sing 344 n n 
CA CB SAM sing 345 n n 
CA HA SAM sing 346 n n 
C O SAM doub 347 n n 
C OXT SAM sing 348 n n 
CB CG SAM sing 349 n n 
CB HB1 SAM sing 350 n n 
CB HB2 SAM sing 351 n n 
CG SD SAM sing 352 n n 
CG HG1 SAM sing 353 n n 
CG HG2 SAM sing 354 n n 
SD CE SAM sing 355 n n 
SD C5' SAM sing 356 n n 
CE HE1 SAM sing 357 n n 
CE HE2 SAM sing 358 n n 
CE HE3 SAM sing 359 n n 
C5' C4' SAM sing 360 n n 
C5' "H5'1" SAM sing 361 n n 
C5' "H5'2" SAM sing 362 n n 
C4' O4' SAM sing 363 n n 
C4' C3' SAM sing 364 n n 
C4' H4' SAM sing 365 n n 
O4' C1' SAM sing 366 n n 
C3' O3' SAM sing 367 n n 
C3' C2' SAM sing 368 n n 
C3' H3' SAM sing 369 n n 
O3' HO3' SAM sing 370 n n 
C2' O2' SAM sing 371 n n 
C2' C1' SAM sing 372 n n 
C2' H2' SAM sing 373 n n 
O2' HO2' SAM sing 374 n n 
C1' N9 SAM sing 375 n n 
C1' H1' SAM sing 376 n n 
N9 C8 SAM sing 377 n y 
N9 C4 SAM sing 378 n y 
C8 N7 SAM doub 379 n y 
C8 H8 SAM sing 380 n n 
N7 C5 SAM sing 381 n y 
C5 C6 SAM sing 382 n y 
C5 C4 SAM doub 383 n y 
C6 N6 SAM sing 384 n n 
C6 N1 SAM doub 385 n y 
N6 HN61 SAM sing 386 n n 
N6 HN62 SAM sing 387 n n 
N1 C2 SAM sing 388 n y 
C2 N3 SAM doub 389 n y 
C2 H2 SAM sing 390 n n 
N3 C4 SAM sing 391 n y 
#
_atom_sites.entry_id                     4XUD 
_atom_sites.fract_transf_matrix[1][1]    0.022825 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017352 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010178 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 43H A 1 301 1 43H 340 . 
C 3 MG A 1 302 1 MG MG . 
D 4 SAM A 1 303 2 SAM SAM . 
E 5 MES A 1 304 3 MES MES . 
F 6 HOH A 1 401 162 HOH HOH . 
F 6 HOH A 2 402 100 HOH HOH . 
F 6 HOH A 3 403 42 HOH HOH . 
F 6 HOH A 4 404 102 HOH HOH . 
F 6 HOH A 5 405 77 HOH HOH . 
F 6 HOH A 6 406 7 HOH HOH . 
F 6 HOH A 7 407 72 HOH HOH . 
F 6 HOH A 8 408 39 HOH HOH . 
F 6 HOH A 9 409 105 HOH HOH . 
F 6 HOH A 10 410 36 HOH HOH . 
F 6 HOH A 11 411 15 HOH HOH . 
F 6 HOH A 12 412 95 HOH HOH . 
F 6 HOH A 13 413 99 HOH HOH . 
F 6 HOH A 14 414 49 HOH HOH . 
F 6 HOH A 15 415 70 HOH HOH . 
F 6 HOH A 16 416 20 HOH HOH . 
F 6 HOH A 17 417 29 HOH HOH . 
F 6 HOH A 18 418 24 HOH HOH . 
F 6 HOH A 19 419 46 HOH HOH . 
F 6 HOH A 20 420 13 HOH HOH . 
F 6 HOH A 21 421 22 HOH HOH . 
F 6 HOH A 22 422 31 HOH HOH . 
F 6 HOH A 23 423 89 HOH HOH . 
F 6 HOH A 24 424 25 HOH HOH . 
F 6 HOH A 25 425 21 HOH HOH . 
F 6 HOH A 26 426 12 HOH HOH . 
F 6 HOH A 27 427 17 HOH HOH . 
F 6 HOH A 28 428 116 HOH HOH . 
F 6 HOH A 29 429 64 HOH HOH . 
F 6 HOH A 30 430 87 HOH HOH . 
F 6 HOH A 31 431 124 HOH HOH . 
F 6 HOH A 32 432 67 HOH HOH . 
F 6 HOH A 33 433 135 HOH HOH . 
F 6 HOH A 34 434 98 HOH HOH . 
F 6 HOH A 35 435 79 HOH HOH . 
F 6 HOH A 36 436 57 HOH HOH . 
F 6 HOH A 37 437 90 HOH HOH . 
F 6 HOH A 38 438 97 HOH HOH . 
F 6 HOH A 39 439 93 HOH HOH . 
F 6 HOH A 40 440 88 HOH HOH . 
F 6 HOH A 41 441 113 HOH HOH . 
F 6 HOH A 42 442 81 HOH HOH . 
F 6 HOH A 43 443 120 HOH HOH . 
F 6 HOH A 44 444 111 HOH HOH . 
F 6 HOH A 45 445 140 HOH HOH . 
F 6 HOH A 46 446 104 HOH HOH . 
F 6 HOH A 47 447 141 HOH HOH . 
F 6 HOH A 48 448 157 HOH HOH . 
F 6 HOH A 49 449 84 HOH HOH . 
F 6 HOH A 50 450 145 HOH HOH . 
F 6 HOH A 51 451 130 HOH HOH . 
F 6 HOH A 52 452 114 HOH HOH . 
F 6 HOH A 53 453 92 HOH HOH . 
F 6 HOH A 54 454 30 HOH HOH . 
F 6 HOH A 55 455 146 HOH HOH . 
F 6 HOH A 56 456 158 HOH HOH . 
F 6 HOH A 57 457 144 HOH HOH . 
F 6 HOH A 58 458 147 HOH HOH . 
F 6 HOH A 59 459 1 HOH HOH . 
F 6 HOH A 60 460 8 HOH HOH . 
F 6 HOH A 61 461 9 HOH HOH . 
F 6 HOH A 62 462 10 HOH HOH . 
F 6 HOH A 63 463 11 HOH HOH . 
F 6 HOH A 64 464 14 HOH HOH . 
F 6 HOH A 65 465 16 HOH HOH . 
F 6 HOH A 66 466 18 HOH HOH . 
F 6 HOH A 67 467 19 HOH HOH . 
F 6 HOH A 68 468 23 HOH HOH . 
F 6 HOH A 69 469 26 HOH HOH . 
F 6 HOH A 70 470 27 HOH HOH . 
F 6 HOH A 71 471 28 HOH HOH . 
F 6 HOH A 72 472 32 HOH HOH . 
F 6 HOH A 73 473 33 HOH HOH . 
F 6 HOH A 74 474 34 HOH HOH . 
F 6 HOH A 75 475 35 HOH HOH . 
F 6 HOH A 76 476 37 HOH HOH . 
F 6 HOH A 77 477 38 HOH HOH . 
F 6 HOH A 78 478 40 HOH HOH . 
F 6 HOH A 79 479 41 HOH HOH . 
F 6 HOH A 80 480 43 HOH HOH . 
F 6 HOH A 81 481 44 HOH HOH . 
F 6 HOH A 82 482 45 HOH HOH . 
F 6 HOH A 83 483 47 HOH HOH . 
F 6 HOH A 84 484 48 HOH HOH . 
F 6 HOH A 85 485 50 HOH HOH . 
F 6 HOH A 86 486 51 HOH HOH . 
F 6 HOH A 87 487 52 HOH HOH . 
F 6 HOH A 88 488 53 HOH HOH . 
F 6 HOH A 89 489 54 HOH HOH . 
F 6 HOH A 90 490 55 HOH HOH . 
F 6 HOH A 91 491 56 HOH HOH . 
F 6 HOH A 92 492 58 HOH HOH . 
F 6 HOH A 93 493 59 HOH HOH . 
F 6 HOH A 94 494 60 HOH HOH . 
F 6 HOH A 95 495 61 HOH HOH . 
F 6 HOH A 96 496 62 HOH HOH . 
F 6 HOH A 97 497 63 HOH HOH . 
F 6 HOH A 98 498 65 HOH HOH . 
F 6 HOH A 99 499 66 HOH HOH . 
F 6 HOH A 100 500 68 HOH HOH . 
F 6 HOH A 101 501 69 HOH HOH . 
F 6 HOH A 102 502 71 HOH HOH . 
F 6 HOH A 103 503 73 HOH HOH . 
F 6 HOH A 104 504 74 HOH HOH . 
F 6 HOH A 105 505 75 HOH HOH . 
F 6 HOH A 106 506 76 HOH HOH . 
F 6 HOH A 107 507 78 HOH HOH . 
F 6 HOH A 108 508 80 HOH HOH . 
F 6 HOH A 109 509 82 HOH HOH . 
F 6 HOH A 110 510 83 HOH HOH . 
F 6 HOH A 111 511 85 HOH HOH . 
F 6 HOH A 112 512 86 HOH HOH . 
F 6 HOH A 113 513 91 HOH HOH . 
F 6 HOH A 114 514 94 HOH HOH . 
F 6 HOH A 115 515 96 HOH HOH . 
F 6 HOH A 116 516 101 HOH HOH . 
F 6 HOH A 117 517 103 HOH HOH . 
F 6 HOH A 118 518 106 HOH HOH . 
F 6 HOH A 119 519 107 HOH HOH . 
F 6 HOH A 120 520 108 HOH HOH . 
F 6 HOH A 121 521 109 HOH HOH . 
F 6 HOH A 122 522 110 HOH HOH . 
F 6 HOH A 123 523 112 HOH HOH . 
F 6 HOH A 124 524 115 HOH HOH . 
F 6 HOH A 125 525 117 HOH HOH . 
F 6 HOH A 126 526 118 HOH HOH . 
F 6 HOH A 127 527 119 HOH HOH . 
F 6 HOH A 128 528 121 HOH HOH . 
F 6 HOH A 129 529 122 HOH HOH . 
F 6 HOH A 130 530 123 HOH HOH . 
F 6 HOH A 131 531 125 HOH HOH . 
F 6 HOH A 132 532 126 HOH HOH . 
F 6 HOH A 133 533 127 HOH HOH . 
F 6 HOH A 134 534 128 HOH HOH . 
F 6 HOH A 135 535 129 HOH HOH . 
F 6 HOH A 136 536 131 HOH HOH . 
F 6 HOH A 137 537 132 HOH HOH . 
F 6 HOH A 138 538 133 HOH HOH . 
F 6 HOH A 139 539 134 HOH HOH . 
F 6 HOH A 140 540 136 HOH HOH . 
F 6 HOH A 141 541 137 HOH HOH . 
F 6 HOH A 142 542 138 HOH HOH . 
F 6 HOH A 143 543 139 HOH HOH . 
F 6 HOH A 144 544 142 HOH HOH . 
F 6 HOH A 145 545 143 HOH HOH . 
F 6 HOH A 146 546 148 HOH HOH . 
F 6 HOH A 147 547 149 HOH HOH . 
F 6 HOH A 148 548 150 HOH HOH . 
F 6 HOH A 149 549 151 HOH HOH . 
F 6 HOH A 150 550 152 HOH HOH . 
F 6 HOH A 151 551 153 HOH HOH . 
F 6 HOH A 152 552 154 HOH HOH . 
F 6 HOH A 153 553 155 HOH HOH . 
F 6 HOH A 154 554 156 HOH HOH . 
F 6 HOH A 155 555 159 HOH HOH . 
F 6 HOH A 156 556 160 HOH HOH . 
F 6 HOH A 157 557 161 HOH HOH . 
F 6 HOH A 158 558 163 HOH HOH . 
F 6 HOH A 159 559 164 HOH HOH . 
F 6 HOH A 160 560 165 HOH HOH . 
F 6 HOH A 161 561 166 HOH HOH . 
F 6 HOH A 162 562 167 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . D 4 -6.291 9.972 -17.709 1 26.16 ? N SAM 303 A 1 
HETATM 2 C CA SAM . . . D 4 -5.191 10.273 -18.672 1 26.26 ? CA SAM 303 A 1 
HETATM 3 C C SAM . . . D 4 -5.591 11.289 -19.741 1 26.25 ? C SAM 303 A 1 
HETATM 4 O O SAM . . . D 4 -6.721 11.321 -20.227 1 25.67 ? O SAM 303 A 1 
HETATM 5 O OXT SAM . . . D 4 -4.763 12.113 -20.139 1 26.53 ? OXT SAM 303 A 1 
HETATM 6 C CB SAM . . . D 4 -4.716 9.017 -19.372 1 26.4 ? CB SAM 303 A 1 
HETATM 7 C CG SAM . . . D 4 -4.114 7.942 -18.476 1 27.26 ? CG SAM 303 A 1 
HETATM 8 S SD SAM . . . D 4 -3.539 6.575 -19.509 1 30.5 ? SD SAM 303 A 1 
HETATM 9 C CE SAM . . . D 4 -5.088 6.046 -20.261 1 30.03 ? CE SAM 303 A 1 
HETATM 10 C C5' SAM . . . D 4 -3.207 5.162 -18.368 1 28.29 ? C5' SAM 303 A 1 
HETATM 11 C C4' SAM . . . D 4 -2.164 5.458 -17.287 1 25.26 ? C4' SAM 303 A 1 
HETATM 12 O O4' SAM . . . D 4 -2.446 4.801 -16.067 1 24.17 ? O4' SAM 303 A 1 
HETATM 13 C C3' SAM . . . D 4 -0.747 5.05 -17.644 1 24.7 ? C3' SAM 303 A 1 
HETATM 14 O O3' SAM . . . D 4 0.037 6.205 -17.48 1 25.36 ? O3' SAM 303 A 1 
HETATM 15 C C2' SAM . . . D 4 -0.354 4.038 -16.582 1 23.7 ? C2' SAM 303 A 1 
HETATM 16 O O2' SAM . . . D 4 1.015 4.134 -16.257 1 24.61 ? O2' SAM 303 A 1 
HETATM 17 C C1' SAM . . . D 4 -1.233 4.474 -15.424 1 21.06 ? C1' SAM 303 A 1 
HETATM 18 N N9 SAM . . . D 4 -1.501 3.423 -14.436 1 20.67 ? N9 SAM 303 A 1 
HETATM 19 C C8 SAM . . . D 4 -1.827 2.123 -14.708 1 20.21 ? C8 SAM 303 A 1 
HETATM 20 N N7 SAM . . . D 4 -2.032 1.465 -13.551 1 20.37 ? N7 SAM 303 A 1 
HETATM 21 C C5 SAM . . . D 4 -1.852 2.335 -12.525 1 20.87 ? C5 SAM 303 A 1 
HETATM 22 C C6 SAM . . . D 4 -1.939 2.187 -11.137 1 20.33 ? C6 SAM 303 A 1 
HETATM 23 N N6 SAM . . . D 4 -2.248 1.012 -10.58 1 20.19 ? N6 SAM 303 A 1 
HETATM 24 N N1 SAM . . . D 4 -1.709 3.281 -10.339 1 19.5 ? N1 SAM 303 A 1 
HETATM 25 C C2 SAM . . . D 4 -1.395 4.496 -10.904 1 19.47 ? C2 SAM 303 A 1 
HETATM 26 N N3 SAM . . . D 4 -1.305 4.635 -12.268 1 18.76 ? N3 SAM 303 A 1 
HETATM 27 C C4 SAM . . . D 4 -1.521 3.572 -13.071 1 19.82 ? C4 SAM 303 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#