data_4XUE # _model_server_result.job_id cB3NvNmaasrAQaV_RHB4fQ _model_server_result.datetime_utc '2024-11-05 21:10:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xue # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 4XUE # _exptl.entry_id 4XUE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(biphenyl-3-yl)-5-hydroxy-3-methylpyrimidin-4(3H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XUE _cell.length_a 55.043 _cell.length_b 113.19 _cell.length_c 113.818 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XUE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 141 B ASP 191 1_555 D MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc2 A OD2 ASP 169 B ASP 219 1_555 D MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc3 A OD1 ASN 170 B ASN 220 1_555 D MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc4 C O 43J . B 43J 301 1_555 D MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 C O5 43J . B 43J 301 1_555 D MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc6 D MG MG . B MG 302 1_555 I O HOH . B HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc7 B OD1 ASP 141 A ASP 191 1_555 G MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc8 B OD2 ASP 169 A ASP 219 1_555 G MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc9 B OD1 ASN 170 A ASN 220 1_555 G MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc10 F O 43J . A 43J 301 1_555 G MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc11 F O5 43J . A 43J 301 1_555 G MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc12 G MG MG . A MG 302 1_555 J O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? # _chem_comp.formula 'C17 H14 N2 O2' _chem_comp.formula_weight 278.305 _chem_comp.id 43J _chem_comp.mon_nstd_flag . _chem_comp.name 2-(biphenyl-3-yl)-5-hydroxy-3-methylpyrimidin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C1 43J sing 1 n n O C2 43J doub 2 n n C1 C2 43J sing 3 n n C1 C 43J doub 4 n n C2 N3 43J sing 5 n n C N 43J sing 6 n n N3 C7 43J sing 7 n n N3 C4 43J sing 8 n n N C4 43J doub 9 n n C4 C6 43J sing 10 n n C6 C12 43J doub 11 n y C6 C8 43J sing 12 n y C12 C11 43J sing 13 n y C8 C9 43J doub 14 n y C11 C10 43J doub 15 n y C9 C10 43J sing 16 n y C9 C13 43J sing 17 n n C13 C18 43J doub 18 n y C13 C14 43J sing 19 n y C18 C17 43J sing 20 n y C14 C15 43J doub 21 n y C17 C16 43J doub 22 n y C15 C16 43J sing 23 n y C12 H1 43J sing 24 n n C18 H2 43J sing 25 n n C14 H3 43J sing 26 n n C15 H4 43J sing 27 n n C16 H5 43J sing 28 n n C11 H6 43J sing 29 n n C H7 43J sing 30 n n O5 H8 43J sing 31 n n C7 H9 43J sing 32 n n C7 H10 43J sing 33 n n C7 H11 43J sing 34 n n C8 H12 43J sing 35 n n C10 H13 43J sing 36 n n C17 H14 43J sing 37 n n # _atom_sites.entry_id 4XUE _atom_sites.fract_transf_matrix[1][1] 0.018168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 43J B 1 301 1 43J 663 . D 3 MG B 1 302 1 MG MG . E 4 SAM B 1 303 2 SAM SAM . F 2 43J A 1 301 1 43J 663 . G 3 MG A 1 302 1 MG MG . H 4 SAM A 1 303 2 SAM SAM . I 5 HOH B 1 401 53 HOH HOH . I 5 HOH B 2 402 20 HOH HOH . I 5 HOH B 3 403 92 HOH HOH . I 5 HOH B 4 404 16 HOH HOH . I 5 HOH B 5 405 29 HOH HOH . I 5 HOH B 6 406 9 HOH HOH . I 5 HOH B 7 407 22 HOH HOH . I 5 HOH B 8 408 36 HOH HOH . I 5 HOH B 9 409 50 HOH HOH . I 5 HOH B 10 410 38 HOH HOH . I 5 HOH B 11 411 114 HOH HOH . I 5 HOH B 12 412 116 HOH HOH . I 5 HOH B 13 413 39 HOH HOH . I 5 HOH B 14 414 12 HOH HOH . I 5 HOH B 15 415 46 HOH HOH . I 5 HOH B 16 416 30 HOH HOH . I 5 HOH B 17 417 66 HOH HOH . I 5 HOH B 18 418 110 HOH HOH . I 5 HOH B 19 419 111 HOH HOH . I 5 HOH B 20 420 2 HOH HOH . I 5 HOH B 21 421 3 HOH HOH . I 5 HOH B 22 422 4 HOH HOH . I 5 HOH B 23 423 5 HOH HOH . I 5 HOH B 24 424 6 HOH HOH . I 5 HOH B 25 425 7 HOH HOH . I 5 HOH B 26 426 10 HOH HOH . I 5 HOH B 27 427 11 HOH HOH . I 5 HOH B 28 428 14 HOH HOH . I 5 HOH B 29 429 15 HOH HOH . I 5 HOH B 30 430 17 HOH HOH . I 5 HOH B 31 431 18 HOH HOH . I 5 HOH B 32 432 23 HOH HOH . I 5 HOH B 33 433 24 HOH HOH . I 5 HOH B 34 434 26 HOH HOH . I 5 HOH B 35 435 40 HOH HOH . I 5 HOH B 36 436 41 HOH HOH . I 5 HOH B 37 437 44 HOH HOH . I 5 HOH B 38 438 45 HOH HOH . I 5 HOH B 39 439 48 HOH HOH . I 5 HOH B 40 440 51 HOH HOH . I 5 HOH B 41 441 55 HOH HOH . I 5 HOH B 42 442 56 HOH HOH . I 5 HOH B 43 443 57 HOH HOH . I 5 HOH B 44 444 58 HOH HOH . I 5 HOH B 45 445 61 HOH HOH . I 5 HOH B 46 446 64 HOH HOH . I 5 HOH B 47 447 65 HOH HOH . I 5 HOH B 48 448 67 HOH HOH . I 5 HOH B 49 449 70 HOH HOH . I 5 HOH B 50 450 73 HOH HOH . I 5 HOH B 51 451 78 HOH HOH . I 5 HOH B 52 452 81 HOH HOH . I 5 HOH B 53 453 82 HOH HOH . I 5 HOH B 54 454 83 HOH HOH . I 5 HOH B 55 455 89 HOH HOH . I 5 HOH B 56 456 91 HOH HOH . I 5 HOH B 57 457 93 HOH HOH . I 5 HOH B 58 458 98 HOH HOH . I 5 HOH B 59 459 101 HOH HOH . I 5 HOH B 60 460 105 HOH HOH . I 5 HOH B 61 461 106 HOH HOH . I 5 HOH B 62 462 109 HOH HOH . I 5 HOH B 63 463 113 HOH HOH . I 5 HOH B 64 464 115 HOH HOH . I 5 HOH B 65 465 120 HOH HOH . J 5 HOH A 1 401 34 HOH HOH . J 5 HOH A 2 402 103 HOH HOH . J 5 HOH A 3 403 43 HOH HOH . J 5 HOH A 4 404 77 HOH HOH . J 5 HOH A 5 405 27 HOH HOH . J 5 HOH A 6 406 117 HOH HOH . J 5 HOH A 7 407 59 HOH HOH . J 5 HOH A 8 408 112 HOH HOH . J 5 HOH A 9 409 72 HOH HOH . J 5 HOH A 10 410 49 HOH HOH . J 5 HOH A 11 411 32 HOH HOH . J 5 HOH A 12 412 52 HOH HOH . J 5 HOH A 13 413 76 HOH HOH . J 5 HOH A 14 414 94 HOH HOH . J 5 HOH A 15 415 74 HOH HOH . J 5 HOH A 16 416 85 HOH HOH . J 5 HOH A 17 417 1 HOH HOH . J 5 HOH A 18 418 8 HOH HOH . J 5 HOH A 19 419 13 HOH HOH . J 5 HOH A 20 420 19 HOH HOH . J 5 HOH A 21 421 21 HOH HOH . J 5 HOH A 22 422 25 HOH HOH . J 5 HOH A 23 423 28 HOH HOH . J 5 HOH A 24 424 31 HOH HOH . J 5 HOH A 25 425 33 HOH HOH . J 5 HOH A 26 426 35 HOH HOH . J 5 HOH A 27 427 37 HOH HOH . J 5 HOH A 28 428 42 HOH HOH . J 5 HOH A 29 429 47 HOH HOH . J 5 HOH A 30 430 54 HOH HOH . J 5 HOH A 31 431 60 HOH HOH . J 5 HOH A 32 432 62 HOH HOH . J 5 HOH A 33 433 63 HOH HOH . J 5 HOH A 34 434 68 HOH HOH . J 5 HOH A 35 435 69 HOH HOH . J 5 HOH A 36 436 71 HOH HOH . J 5 HOH A 37 437 75 HOH HOH . J 5 HOH A 38 438 79 HOH HOH . J 5 HOH A 39 439 80 HOH HOH . J 5 HOH A 40 440 84 HOH HOH . J 5 HOH A 41 441 86 HOH HOH . J 5 HOH A 42 442 87 HOH HOH . J 5 HOH A 43 443 88 HOH HOH . J 5 HOH A 44 444 90 HOH HOH . J 5 HOH A 45 445 95 HOH HOH . J 5 HOH A 46 446 96 HOH HOH . J 5 HOH A 47 447 97 HOH HOH . J 5 HOH A 48 448 99 HOH HOH . J 5 HOH A 49 449 100 HOH HOH . J 5 HOH A 50 450 102 HOH HOH . J 5 HOH A 51 451 104 HOH HOH . J 5 HOH A 52 452 107 HOH HOH . J 5 HOH A 53 453 108 HOH HOH . J 5 HOH A 54 454 118 HOH HOH . J 5 HOH A 55 455 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 43J . . . F 2 6.332 -1.465 -32.588 1 25.82 ? C12 43J 301 A 1 HETATM 2 C C13 43J . . . F 2 3.771 -0.365 -29.265 1 25.99 ? C13 43J 301 A 1 HETATM 3 C C18 43J . . . F 2 2.814 -1.261 -28.781 1 26.24 ? C18 43J 301 A 1 HETATM 4 C C14 43J . . . F 2 3.875 0.88 -28.639 1 26.22 ? C14 43J 301 A 1 HETATM 5 C C15 43J . . . F 2 3.042 1.206 -27.568 1 26.02 ? C15 43J 301 A 1 HETATM 6 C C16 43J . . . F 2 2.087 0.297 -27.094 1 25.89 ? C16 43J 301 A 1 HETATM 7 C C11 43J . . . F 2 6.868 -0.901 -31.428 1 26.47 ? C11 43J 301 A 1 HETATM 8 C C9 43J . . . F 2 4.661 -0.739 -30.412 1 25.8 ? C9 43J 301 A 1 HETATM 9 C C1 43J . . . F 2 3.225 -3.482 -36.001 1 23.76 ? C1 43J 301 A 1 HETATM 10 C C6 43J . . . F 2 4.958 -1.66 -32.646 1 24.08 ? C6 43J 301 A 1 HETATM 11 C C4 43J . . . F 2 4.317 -2.27 -33.844 1 24.32 ? C4 43J 301 A 1 HETATM 12 N N 43J . . . F 2 4.794 -3.485 -34.195 1 24.14 ? N 43J 301 A 1 HETATM 13 C C 43J . . . F 2 4.233 -4.075 -35.266 1 23.52 ? C 43J 301 A 1 HETATM 14 C C2 43J . . . F 2 2.761 -2.227 -35.619 1 23.77 ? C2 43J 301 A 1 HETATM 15 N N3 43J . . . F 2 3.334 -1.625 -34.535 1 24.44 ? N3 43J 301 A 1 HETATM 16 O O 43J . . . F 2 1.784 -1.733 -36.372 1 23.83 ? O 43J 301 A 1 HETATM 17 O O5 43J . . . F 2 2.675 -4.067 -37.07 1 23.32 ? O5 43J 301 A 1 HETATM 18 C C7 43J . . . F 2 2.844 -0.291 -34.165 1 22.75 ? C7 43J 301 A 1 HETATM 19 C C8 43J . . . F 2 4.14 -1.312 -31.572 1 25.08 ? C8 43J 301 A 1 HETATM 20 C C10 43J . . . F 2 6.037 -0.549 -30.36 1 25.26 ? C10 43J 301 A 1 HETATM 21 C C17 43J . . . F 2 1.972 -0.95 -27.705 1 27.07 ? C17 43J 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #