data_4XUE # _model_server_result.job_id wtahNnANOdX8D7ns7dt_SA _model_server_result.datetime_utc '2024-11-05 21:15:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xue # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 4XUE # _exptl.entry_id 4XUE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XUE _cell.length_a 55.043 _cell.length_b 113.19 _cell.length_c 113.818 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XUE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 141 B ASP 191 1_555 D MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc2 A OD2 ASP 169 B ASP 219 1_555 D MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc3 A OD1 ASN 170 B ASN 220 1_555 D MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc4 C O 43J . B 43J 301 1_555 D MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 C O5 43J . B 43J 301 1_555 D MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc6 D MG MG . B MG 302 1_555 I O HOH . B HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc7 B OD1 ASP 141 A ASP 191 1_555 G MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc8 B OD2 ASP 169 A ASP 219 1_555 G MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc9 B OD1 ASN 170 A ASN 220 1_555 G MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc10 F O 43J . A 43J 301 1_555 G MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc11 F O5 43J . A 43J 301 1_555 G MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc12 G MG MG . A MG 302 1_555 J O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 314 n n N HN1 SAM sing 315 n n N HN2 SAM sing 316 n n CA C SAM sing 317 n n CA CB SAM sing 318 n n CA HA SAM sing 319 n n C O SAM doub 320 n n C OXT SAM sing 321 n n CB CG SAM sing 322 n n CB HB1 SAM sing 323 n n CB HB2 SAM sing 324 n n CG SD SAM sing 325 n n CG HG1 SAM sing 326 n n CG HG2 SAM sing 327 n n SD CE SAM sing 328 n n SD C5' SAM sing 329 n n CE HE1 SAM sing 330 n n CE HE2 SAM sing 331 n n CE HE3 SAM sing 332 n n C5' C4' SAM sing 333 n n C5' "H5'1" SAM sing 334 n n C5' "H5'2" SAM sing 335 n n C4' O4' SAM sing 336 n n C4' C3' SAM sing 337 n n C4' H4' SAM sing 338 n n O4' C1' SAM sing 339 n n C3' O3' SAM sing 340 n n C3' C2' SAM sing 341 n n C3' H3' SAM sing 342 n n O3' HO3' SAM sing 343 n n C2' O2' SAM sing 344 n n C2' C1' SAM sing 345 n n C2' H2' SAM sing 346 n n O2' HO2' SAM sing 347 n n C1' N9 SAM sing 348 n n C1' H1' SAM sing 349 n n N9 C8 SAM sing 350 n y N9 C4 SAM sing 351 n y C8 N7 SAM doub 352 n y C8 H8 SAM sing 353 n n N7 C5 SAM sing 354 n y C5 C6 SAM sing 355 n y C5 C4 SAM doub 356 n y C6 N6 SAM sing 357 n n C6 N1 SAM doub 358 n y N6 HN61 SAM sing 359 n n N6 HN62 SAM sing 360 n n N1 C2 SAM sing 361 n y C2 N3 SAM doub 362 n y C2 H2 SAM sing 363 n n N3 C4 SAM sing 364 n y # _atom_sites.entry_id 4XUE _atom_sites.fract_transf_matrix[1][1] 0.018168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 43J B 1 301 1 43J 663 . D 3 MG B 1 302 1 MG MG . E 4 SAM B 1 303 2 SAM SAM . F 2 43J A 1 301 1 43J 663 . G 3 MG A 1 302 1 MG MG . H 4 SAM A 1 303 2 SAM SAM . I 5 HOH B 1 401 53 HOH HOH . I 5 HOH B 2 402 20 HOH HOH . I 5 HOH B 3 403 92 HOH HOH . I 5 HOH B 4 404 16 HOH HOH . I 5 HOH B 5 405 29 HOH HOH . I 5 HOH B 6 406 9 HOH HOH . I 5 HOH B 7 407 22 HOH HOH . I 5 HOH B 8 408 36 HOH HOH . I 5 HOH B 9 409 50 HOH HOH . I 5 HOH B 10 410 38 HOH HOH . I 5 HOH B 11 411 114 HOH HOH . I 5 HOH B 12 412 116 HOH HOH . I 5 HOH B 13 413 39 HOH HOH . I 5 HOH B 14 414 12 HOH HOH . I 5 HOH B 15 415 46 HOH HOH . I 5 HOH B 16 416 30 HOH HOH . I 5 HOH B 17 417 66 HOH HOH . I 5 HOH B 18 418 110 HOH HOH . I 5 HOH B 19 419 111 HOH HOH . I 5 HOH B 20 420 2 HOH HOH . I 5 HOH B 21 421 3 HOH HOH . I 5 HOH B 22 422 4 HOH HOH . I 5 HOH B 23 423 5 HOH HOH . I 5 HOH B 24 424 6 HOH HOH . I 5 HOH B 25 425 7 HOH HOH . I 5 HOH B 26 426 10 HOH HOH . I 5 HOH B 27 427 11 HOH HOH . I 5 HOH B 28 428 14 HOH HOH . I 5 HOH B 29 429 15 HOH HOH . I 5 HOH B 30 430 17 HOH HOH . I 5 HOH B 31 431 18 HOH HOH . I 5 HOH B 32 432 23 HOH HOH . I 5 HOH B 33 433 24 HOH HOH . I 5 HOH B 34 434 26 HOH HOH . I 5 HOH B 35 435 40 HOH HOH . I 5 HOH B 36 436 41 HOH HOH . I 5 HOH B 37 437 44 HOH HOH . I 5 HOH B 38 438 45 HOH HOH . I 5 HOH B 39 439 48 HOH HOH . I 5 HOH B 40 440 51 HOH HOH . I 5 HOH B 41 441 55 HOH HOH . I 5 HOH B 42 442 56 HOH HOH . I 5 HOH B 43 443 57 HOH HOH . I 5 HOH B 44 444 58 HOH HOH . I 5 HOH B 45 445 61 HOH HOH . I 5 HOH B 46 446 64 HOH HOH . I 5 HOH B 47 447 65 HOH HOH . I 5 HOH B 48 448 67 HOH HOH . I 5 HOH B 49 449 70 HOH HOH . I 5 HOH B 50 450 73 HOH HOH . I 5 HOH B 51 451 78 HOH HOH . I 5 HOH B 52 452 81 HOH HOH . I 5 HOH B 53 453 82 HOH HOH . I 5 HOH B 54 454 83 HOH HOH . I 5 HOH B 55 455 89 HOH HOH . I 5 HOH B 56 456 91 HOH HOH . I 5 HOH B 57 457 93 HOH HOH . I 5 HOH B 58 458 98 HOH HOH . I 5 HOH B 59 459 101 HOH HOH . I 5 HOH B 60 460 105 HOH HOH . I 5 HOH B 61 461 106 HOH HOH . I 5 HOH B 62 462 109 HOH HOH . I 5 HOH B 63 463 113 HOH HOH . I 5 HOH B 64 464 115 HOH HOH . I 5 HOH B 65 465 120 HOH HOH . J 5 HOH A 1 401 34 HOH HOH . J 5 HOH A 2 402 103 HOH HOH . J 5 HOH A 3 403 43 HOH HOH . J 5 HOH A 4 404 77 HOH HOH . J 5 HOH A 5 405 27 HOH HOH . J 5 HOH A 6 406 117 HOH HOH . J 5 HOH A 7 407 59 HOH HOH . J 5 HOH A 8 408 112 HOH HOH . J 5 HOH A 9 409 72 HOH HOH . J 5 HOH A 10 410 49 HOH HOH . J 5 HOH A 11 411 32 HOH HOH . J 5 HOH A 12 412 52 HOH HOH . J 5 HOH A 13 413 76 HOH HOH . J 5 HOH A 14 414 94 HOH HOH . J 5 HOH A 15 415 74 HOH HOH . J 5 HOH A 16 416 85 HOH HOH . J 5 HOH A 17 417 1 HOH HOH . J 5 HOH A 18 418 8 HOH HOH . J 5 HOH A 19 419 13 HOH HOH . J 5 HOH A 20 420 19 HOH HOH . J 5 HOH A 21 421 21 HOH HOH . J 5 HOH A 22 422 25 HOH HOH . J 5 HOH A 23 423 28 HOH HOH . J 5 HOH A 24 424 31 HOH HOH . J 5 HOH A 25 425 33 HOH HOH . J 5 HOH A 26 426 35 HOH HOH . J 5 HOH A 27 427 37 HOH HOH . J 5 HOH A 28 428 42 HOH HOH . J 5 HOH A 29 429 47 HOH HOH . J 5 HOH A 30 430 54 HOH HOH . J 5 HOH A 31 431 60 HOH HOH . J 5 HOH A 32 432 62 HOH HOH . J 5 HOH A 33 433 63 HOH HOH . J 5 HOH A 34 434 68 HOH HOH . J 5 HOH A 35 435 69 HOH HOH . J 5 HOH A 36 436 71 HOH HOH . J 5 HOH A 37 437 75 HOH HOH . J 5 HOH A 38 438 79 HOH HOH . J 5 HOH A 39 439 80 HOH HOH . J 5 HOH A 40 440 84 HOH HOH . J 5 HOH A 41 441 86 HOH HOH . J 5 HOH A 42 442 87 HOH HOH . J 5 HOH A 43 443 88 HOH HOH . J 5 HOH A 44 444 90 HOH HOH . J 5 HOH A 45 445 95 HOH HOH . J 5 HOH A 46 446 96 HOH HOH . J 5 HOH A 47 447 97 HOH HOH . J 5 HOH A 48 448 99 HOH HOH . J 5 HOH A 49 449 100 HOH HOH . J 5 HOH A 50 450 102 HOH HOH . J 5 HOH A 51 451 104 HOH HOH . J 5 HOH A 52 452 107 HOH HOH . J 5 HOH A 53 453 108 HOH HOH . J 5 HOH A 54 454 118 HOH HOH . J 5 HOH A 55 455 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . E 4 11.168 -13.753 -12.019 1 18.95 ? N SAM 303 B 1 HETATM 2 C CA SAM . . . E 4 11.29 -12.338 -12.471 1 19.36 ? CA SAM 303 B 1 HETATM 3 C C SAM . . . E 4 12.36 -12.147 -13.551 1 19.86 ? C SAM 303 B 1 HETATM 4 O O SAM . . . E 4 13.483 -12.681 -13.472 1 20.11 ? O SAM 303 B 1 HETATM 5 O OXT SAM . . . E 4 12.106 -11.448 -14.546 1 19.84 ? OXT SAM 303 B 1 HETATM 6 C CB SAM . . . E 4 11.578 -11.422 -11.286 1 19.03 ? CB SAM 303 B 1 HETATM 7 C CG SAM . . . E 4 10.546 -11.496 -10.16 1 18.98 ? CG SAM 303 B 1 HETATM 8 S SD SAM . . . E 4 10.948 -10.307 -8.858 1 18.93 ? SD SAM 303 B 1 HETATM 9 C CE SAM . . . E 4 12.568 -11.012 -8.606 1 22.54 ? CE SAM 303 B 1 HETATM 10 C C5' SAM . . . E 4 9.963 -10.882 -7.454 1 19.29 ? C5' SAM 303 B 1 HETATM 11 C C4' SAM . . . E 4 8.475 -10.727 -7.765 1 20.66 ? C4' SAM 303 B 1 HETATM 12 O O4' SAM . . . E 4 7.715 -11.625 -6.982 1 20.28 ? O4' SAM 303 B 1 HETATM 13 C C3' SAM . . . E 4 7.909 -9.332 -7.521 1 20.9 ? C3' SAM 303 B 1 HETATM 14 O O3' SAM . . . E 4 7.236 -8.973 -8.708 1 21.09 ? O3' SAM 303 B 1 HETATM 15 C C2' SAM . . . E 4 6.901 -9.528 -6.406 1 20.47 ? C2' SAM 303 B 1 HETATM 16 O O2' SAM . . . E 4 5.773 -8.706 -6.615 1 21.87 ? O2' SAM 303 B 1 HETATM 17 C C1' SAM . . . E 4 6.522 -11.001 -6.58 1 18.73 ? C1' SAM 303 B 1 HETATM 18 N N9 SAM . . . E 4 6.068 -11.699 -5.365 1 18.54 ? N9 SAM 303 B 1 HETATM 19 C C8 SAM . . . E 4 6.546 -11.538 -4.079 1 17.84 ? C8 SAM 303 B 1 HETATM 20 N N7 SAM . . . E 4 5.878 -12.393 -3.279 1 18.13 ? N7 SAM 303 B 1 HETATM 21 C C5 SAM . . . E 4 4.985 -13.087 -4.031 1 17.41 ? C5 SAM 303 B 1 HETATM 22 C C6 SAM . . . E 4 4.074 -14.077 -3.724 1 16.73 ? C6 SAM 303 B 1 HETATM 23 N N6 SAM . . . E 4 3.954 -14.498 -2.469 1 18.18 ? N6 SAM 303 B 1 HETATM 24 N N1 SAM . . . E 4 3.294 -14.63 -4.721 1 16.95 ? N1 SAM 303 B 1 HETATM 25 C C2 SAM . . . E 4 3.416 -14.194 -6.026 1 17.88 ? C2 SAM 303 B 1 HETATM 26 N N3 SAM . . . E 4 4.349 -13.222 -6.325 1 17.37 ? N3 SAM 303 B 1 HETATM 27 C C4 SAM . . . E 4 5.109 -12.674 -5.349 1 17.14 ? C4 SAM 303 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #