data_4XUI
#
_model_server_result.job_id            NSYf4BDrVSDxhoM5GWHLHw 
_model_server_result.datetime_utc      '2025-01-16 16:55:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xui 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    4XUI 
#
_exptl.entry_id    4XUI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              601.721 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(2S)-5-(carbamimidamidooxy)-1-oxo-1-{[(1E,3S)-5-phenyl-1-(pyrimidin-2-ylsulfonyl)pent-1-en-3-yl]amino}pentan-2-yl]-4-methylpiperazine-1-carboxamide 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4XUI 
_cell.length_a            101.2 
_cell.length_b            101.2 
_cell.length_c            64.9 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XUI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,K 1 1 
B,E,L 2 1 
C,F,G,H,I,J,M 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 22 1_555 A SG CYS 64 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 57 A CYS 56 1_555 A SG CYS 102 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 A SG CYS 156 A CYS 155 1_555 A SG CYS 204 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf4 B SG CYS 23 B CYS 22 1_555 B SG CYS 64 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 B SG CYS 57 B CYS 56 1_555 B SG CYS 102 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf6 B SG CYS 156 B CYS 155 1_555 B SG CYS 204 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 C SG CYS 23 C CYS 22 1_555 C SG CYS 64 C CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf8 C SG CYS 57 C CYS 56 1_555 C SG CYS 102 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'C27 H39 N9 O5 S' 
_chem_comp.formula_weight    601.721 
_chem_comp.id                2VC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(2S)-5-(carbamimidamidooxy)-1-oxo-1-{[(1E,3S)-5-phenyl-1-(pyrimidin-2-ylsulfonyl)pent-1-en-3-yl]amino}pentan-2-yl]-4-methylpiperazine-1-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C37 C38 2VC doub 1 n y 
C37 C36 2VC sing 2 n y 
C38 C39 2VC sing 3 n y 
C01 N02 2VC sing 4 n n 
C36 C35 2VC doub 5 n y 
C03 N02 2VC sing 6 n n 
C03 C04 2VC sing 7 n n 
C39 C40 2VC doub 8 n y 
N02 C42 2VC sing 9 n n 
N17 C15 2VC doub 10 n n 
C35 C40 2VC sing 11 n y 
C35 C34 2VC sing 12 n n 
C04 N05 2VC sing 13 n n 
C42 C41 2VC sing 14 n n 
C34 C33 2VC sing 15 n n 
C15 N16 2VC sing 16 n n 
C15 N14 2VC sing 17 n n 
O07 C06 2VC doub 18 n n 
N05 C06 2VC sing 19 n n 
N05 C41 2VC sing 20 n n 
C29 N28 2VC doub 21 n y 
C29 C30 2VC sing 22 n y 
C33 C21 2VC sing 23 n n 
C06 N08 2VC sing 24 n n 
N28 C27 2VC sing 25 n y 
N14 O13 2VC sing 26 n n 
C30 C31 2VC doub 27 n y 
N08 C09 2VC sing 28 n n 
C23 C22 2VC doub 29 e n 
C23 S24 2VC sing 30 n n 
N20 C21 2VC sing 31 n n 
N20 C18 2VC sing 32 n n 
C09 C18 2VC sing 33 n n 
C09 C10 2VC sing 34 n n 
C27 S24 2VC sing 35 n n 
C27 N32 2VC doub 36 n y 
O25 S24 2VC doub 37 n n 
C21 C22 2VC sing 38 n n 
C18 O19 2VC doub 39 n n 
O13 C12 2VC sing 40 n n 
S24 O26 2VC doub 41 n n 
C31 N32 2VC sing 42 n y 
C12 C11 2VC sing 43 n n 
C10 C11 2VC sing 44 n n 
C10 H1 2VC sing 45 n n 
C10 H2 2VC sing 46 n n 
C21 H3 2VC sing 47 n n 
C22 H4 2VC sing 48 n n 
C01 H6 2VC sing 49 n n 
C01 H7 2VC sing 50 n n 
C01 H8 2VC sing 51 n n 
C03 H10 2VC sing 52 n n 
C03 H11 2VC sing 53 n n 
C04 H12 2VC sing 54 n n 
C04 H13 2VC sing 55 n n 
N08 H14 2VC sing 56 n n 
C09 H15 2VC sing 57 n n 
C11 H16 2VC sing 58 n n 
C11 H17 2VC sing 59 n n 
C12 H18 2VC sing 60 n n 
C12 H19 2VC sing 61 n n 
N14 H20 2VC sing 62 n n 
N16 H21 2VC sing 63 n n 
N16 H22 2VC sing 64 n n 
N17 H23 2VC sing 65 n n 
N20 H24 2VC sing 66 n n 
C23 H25 2VC sing 67 n n 
C29 H27 2VC sing 68 n n 
C30 H28 2VC sing 69 n n 
C31 H29 2VC sing 70 n n 
C33 H30 2VC sing 71 n n 
C33 H31 2VC sing 72 n n 
C34 H32 2VC sing 73 n n 
C34 H33 2VC sing 74 n n 
C36 H34 2VC sing 75 n n 
C37 H35 2VC sing 76 n n 
C38 H36 2VC sing 77 n n 
C39 H37 2VC sing 78 n n 
C40 H38 2VC sing 79 n n 
C41 H39 2VC sing 80 n n 
C41 H40 2VC sing 81 n n 
C42 H41 2VC sing 82 n n 
C42 H42 2VC sing 83 n n 
#
_atom_sites.entry_id                     4XUI 
_atom_sites.fract_transf_matrix[1][1]    0.009881 
_atom_sites.fract_transf_matrix[1][2]    0.005705 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01141 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015408 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 2VC A 1 301 1 2VC LIG . 
E 2 2VC B 1 301 1 2VC LIG . 
F 2 2VC C 1 301 1 2VC LIG . 
G 3 EDO C 1 302 1 EDO ETH . 
H 3 EDO C 1 303 1 EDO ETH . 
I 3 EDO C 1 304 1 EDO ETH . 
J 3 EDO C 1 305 1 EDO ETH . 
K 4 HOH A 1 401 51 HOH HOH . 
K 4 HOH A 2 402 59 HOH HOH . 
K 4 HOH A 3 403 44 HOH HOH . 
K 4 HOH A 4 404 38 HOH HOH . 
K 4 HOH A 5 405 81 HOH HOH . 
K 4 HOH A 6 406 45 HOH HOH . 
K 4 HOH A 7 407 3 HOH HOH . 
K 4 HOH A 8 408 5 HOH HOH . 
K 4 HOH A 9 409 25 HOH HOH . 
K 4 HOH A 10 410 26 HOH HOH . 
K 4 HOH A 11 411 28 HOH HOH . 
K 4 HOH A 12 412 29 HOH HOH . 
K 4 HOH A 13 413 30 HOH HOH . 
K 4 HOH A 14 414 31 HOH HOH . 
K 4 HOH A 15 415 37 HOH HOH . 
K 4 HOH A 16 416 39 HOH HOH . 
K 4 HOH A 17 417 46 HOH HOH . 
K 4 HOH A 18 418 52 HOH HOH . 
K 4 HOH A 19 419 53 HOH HOH . 
K 4 HOH A 20 420 54 HOH HOH . 
K 4 HOH A 21 421 55 HOH HOH . 
K 4 HOH A 22 422 56 HOH HOH . 
K 4 HOH A 23 423 57 HOH HOH . 
K 4 HOH A 24 424 58 HOH HOH . 
K 4 HOH A 25 425 76 HOH HOH . 
K 4 HOH A 26 426 77 HOH HOH . 
L 4 HOH B 1 401 61 HOH HOH . 
L 4 HOH B 2 402 42 HOH HOH . 
L 4 HOH B 3 403 78 HOH HOH . 
L 4 HOH B 4 404 75 HOH HOH . 
L 4 HOH B 5 405 1 HOH HOH . 
L 4 HOH B 6 406 2 HOH HOH . 
L 4 HOH B 7 407 4 HOH HOH . 
L 4 HOH B 8 408 6 HOH HOH . 
L 4 HOH B 9 409 7 HOH HOH . 
L 4 HOH B 10 410 8 HOH HOH . 
L 4 HOH B 11 411 43 HOH HOH . 
L 4 HOH B 12 412 48 HOH HOH . 
L 4 HOH B 13 413 49 HOH HOH . 
L 4 HOH B 14 414 60 HOH HOH . 
L 4 HOH B 15 415 62 HOH HOH . 
L 4 HOH B 16 416 63 HOH HOH . 
L 4 HOH B 17 417 64 HOH HOH . 
L 4 HOH B 18 418 65 HOH HOH . 
L 4 HOH B 19 419 66 HOH HOH . 
L 4 HOH B 20 420 67 HOH HOH . 
L 4 HOH B 21 421 80 HOH HOH . 
M 4 HOH C 1 401 14 HOH HOH . 
M 4 HOH C 2 402 68 HOH HOH . 
M 4 HOH C 3 403 69 HOH HOH . 
M 4 HOH C 4 404 33 HOH HOH . 
M 4 HOH C 5 405 17 HOH HOH . 
M 4 HOH C 6 406 16 HOH HOH . 
M 4 HOH C 7 407 70 HOH HOH . 
M 4 HOH C 8 408 23 HOH HOH . 
M 4 HOH C 9 409 72 HOH HOH . 
M 4 HOH C 10 410 22 HOH HOH . 
M 4 HOH C 11 411 35 HOH HOH . 
M 4 HOH C 12 412 9 HOH HOH . 
M 4 HOH C 13 413 10 HOH HOH . 
M 4 HOH C 14 414 11 HOH HOH . 
M 4 HOH C 15 415 13 HOH HOH . 
M 4 HOH C 16 416 15 HOH HOH . 
M 4 HOH C 17 417 18 HOH HOH . 
M 4 HOH C 18 418 19 HOH HOH . 
M 4 HOH C 19 419 20 HOH HOH . 
M 4 HOH C 20 420 21 HOH HOH . 
M 4 HOH C 21 421 24 HOH HOH . 
M 4 HOH C 22 422 27 HOH HOH . 
M 4 HOH C 23 423 32 HOH HOH . 
M 4 HOH C 24 424 34 HOH HOH . 
M 4 HOH C 25 425 36 HOH HOH . 
M 4 HOH C 26 426 40 HOH HOH . 
M 4 HOH C 27 427 41 HOH HOH . 
M 4 HOH C 28 428 47 HOH HOH . 
M 4 HOH C 29 429 50 HOH HOH . 
M 4 HOH C 30 430 71 HOH HOH . 
M 4 HOH C 31 431 73 HOH HOH . 
M 4 HOH C 32 432 74 HOH HOH . 
M 4 HOH C 33 433 79 HOH HOH . 
M 4 HOH C 34 434 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 2VC . . . D 2 16.009 9.841 -13.048 1 23.26 ? C10 2VC 301 A 1 
HETATM 2 C C15 2VC . . . D 2 19.847 7.443 -15.979 1 22.24 ? C15 2VC 301 A 1 
HETATM 3 C C21 2VC . . . D 2 12.038 12.16 -14.04 1 23 ? C21 2VC 301 A 1 
HETATM 4 C C22 2VC . . . D 2 10.523 12.153 -13.77 1 23.42 ? C22 2VC 301 A 1 
HETATM 5 C C01 2VC . . . D 2 21.053 14.885 -18.304 1 42.89 ? C01 2VC 301 A 1 
HETATM 6 N N02 2VC . . . D 2 19.999 14.003 -17.823 1 48.38 ? N02 2VC 301 A 1 
HETATM 7 C C03 2VC . . . D 2 18.606 14.304 -18.113 1 44.53 ? C03 2VC 301 A 1 
HETATM 8 C C04 2VC . . . D 2 17.766 14.484 -16.88 1 40.49 ? C04 2VC 301 A 1 
HETATM 9 N N05 2VC . . . D 2 17.904 13.399 -15.977 1 37.8 ? N05 2VC 301 A 1 
HETATM 10 C C06 2VC . . . D 2 16.763 12.619 -15.573 1 32.06 ? C06 2VC 301 A 1 
HETATM 11 O O07 2VC . . . D 2 15.69 12.927 -16.033 1 33.19 ? O07 2VC 301 A 1 
HETATM 12 N N08 2VC . . . D 2 16.855 11.488 -14.645 1 35.28 ? N08 2VC 301 A 1 
HETATM 13 C C09 2VC . . . D 2 15.674 10.707 -14.234 1 26.32 ? C09 2VC 301 A 1 
HETATM 14 C C11 2VC . . . D 2 16.551 8.44 -13.345 1 24.28 ? C11 2VC 301 A 1 
HETATM 15 C C12 2VC . . . D 2 17.929 8.143 -12.855 1 27.33 ? C12 2VC 301 A 1 
HETATM 16 O O13 2VC . . . D 2 18.854 7.529 -13.767 1 30.86 ? O13 2VC 301 A 1 
HETATM 17 N N14 2VC . . . D 2 18.7 7.629 -15.115 1 24.86 ? N14 2VC 301 A 1 
HETATM 18 N N16 2VC . . . D 2 21.043 7.173 -15.469 1 24.56 ? N16 2VC 301 A 1 
HETATM 19 N N17 2VC . . . D 2 19.701 7.551 -17.377 1 21.58 ? N17 2VC 301 A 1 
HETATM 20 C C18 2VC . . . D 2 14.394 11.562 -13.911 1 18.8 ? C18 2VC 301 A 1 
HETATM 21 O O19 2VC . . . D 2 14.473 12.59 -13.191 1 17.33 ? O19 2VC 301 A 1 
HETATM 22 N N20 2VC . . . D 2 13.114 11.208 -14.435 1 20.34 ? N20 2VC 301 A 1 
HETATM 23 C C23 2VC . . . D 2 9.616 11.4 -14.486 1 24.94 ? C23 2VC 301 A 1 
HETATM 24 S S24 2VC . . . D 2 8.158 10.762 -13.62 1 29.44 ? S24 2VC 301 A 1 
HETATM 25 O O25 2VC . . . D 2 7.889 9.437 -14.046 1 21.14 ? O25 2VC 301 A 1 
HETATM 26 O O26 2VC . . . D 2 8.436 10.603 -12.177 1 19.8 ? O26 2VC 301 A 1 
HETATM 27 C C27 2VC . . . D 2 6.76 11.802 -13.888 1 34.26 ? C27 2VC 301 A 1 
HETATM 28 N N28 2VC . . . D 2 6.909 13.027 -14.482 1 31.3 ? N28 2VC 301 A 1 
HETATM 29 C C29 2VC . . . D 2 5.866 13.855 -14.712 1 21.89 ? C29 2VC 301 A 1 
HETATM 30 C C30 2VC . . . D 2 4.572 13.421 -14.317 1 24.86 ? C30 2VC 301 A 1 
HETATM 31 C C31 2VC . . . D 2 4.423 12.157 -13.703 1 33.2 ? C31 2VC 301 A 1 
HETATM 32 N N32 2VC . . . D 2 5.504 11.37 -13.5 1 32.4 ? N32 2VC 301 A 1 
HETATM 33 C C33 2VC . . . D 2 11.842 12.732 -15.48 1 22.95 ? C33 2VC 301 A 1 
HETATM 34 C C34 2VC . . . D 2 11.684 14.199 -15.614 1 24.12 ? C34 2VC 301 A 1 
HETATM 35 C C35 2VC . . . D 2 10.756 14.686 -16.696 1 21.93 ? C35 2VC 301 A 1 
HETATM 36 C C36 2VC . . . D 2 10.685 13.985 -17.918 1 20.97 ? C36 2VC 301 A 1 
HETATM 37 C C37 2VC . . . D 2 9.82 14.427 -18.941 1 16.64 ? C37 2VC 301 A 1 
HETATM 38 C C38 2VC . . . D 2 9.032 15.563 -18.733 1 17.04 ? C38 2VC 301 A 1 
HETATM 39 C C39 2VC . . . D 2 9.1 16.264 -17.511 1 21.81 ? C39 2VC 301 A 1 
HETATM 40 C C40 2VC . . . D 2 9.959 15.825 -16.482 1 20.49 ? C40 2VC 301 A 1 
HETATM 41 C C41 2VC . . . D 2 19.245 13.192 -15.55 1 31.57 ? C41 2VC 301 A 1 
HETATM 42 C C42 2VC . . . D 2 20.226 13.098 -16.687 1 47.28 ? C42 2VC 301 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           42 
#