data_4XUI # _model_server_result.job_id 1qTk60rvRSo_mEBCf4vk7g _model_server_result.datetime_utc '2025-01-16 17:10:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xui # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 4XUI # _exptl.entry_id 4XUI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 601.721 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S)-5-(carbamimidamidooxy)-1-oxo-1-{[(1E,3S)-5-phenyl-1-(pyrimidin-2-ylsulfonyl)pent-1-en-3-yl]amino}pentan-2-yl]-4-methylpiperazine-1-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XUI _cell.length_a 101.2 _cell.length_b 101.2 _cell.length_c 64.9 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XUI _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,K 1 1 B,E,L 2 1 C,F,G,H,I,J,M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 22 1_555 A SG CYS 64 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 57 A CYS 56 1_555 A SG CYS 102 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 156 A CYS 155 1_555 A SG CYS 204 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf4 B SG CYS 23 B CYS 22 1_555 B SG CYS 64 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 57 B CYS 56 1_555 B SG CYS 102 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 B SG CYS 156 B CYS 155 1_555 B SG CYS 204 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 C SG CYS 23 C CYS 22 1_555 C SG CYS 64 C CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 C SG CYS 57 C CYS 56 1_555 C SG CYS 102 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C27 H39 N9 O5 S' _chem_comp.formula_weight 601.721 _chem_comp.id 2VC _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S)-5-(carbamimidamidooxy)-1-oxo-1-{[(1E,3S)-5-phenyl-1-(pyrimidin-2-ylsulfonyl)pent-1-en-3-yl]amino}pentan-2-yl]-4-methylpiperazine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C37 C38 2VC doub 1 n y C37 C36 2VC sing 2 n y C38 C39 2VC sing 3 n y C01 N02 2VC sing 4 n n C36 C35 2VC doub 5 n y C03 N02 2VC sing 6 n n C03 C04 2VC sing 7 n n C39 C40 2VC doub 8 n y N02 C42 2VC sing 9 n n N17 C15 2VC doub 10 n n C35 C40 2VC sing 11 n y C35 C34 2VC sing 12 n n C04 N05 2VC sing 13 n n C42 C41 2VC sing 14 n n C34 C33 2VC sing 15 n n C15 N16 2VC sing 16 n n C15 N14 2VC sing 17 n n O07 C06 2VC doub 18 n n N05 C06 2VC sing 19 n n N05 C41 2VC sing 20 n n C29 N28 2VC doub 21 n y C29 C30 2VC sing 22 n y C33 C21 2VC sing 23 n n C06 N08 2VC sing 24 n n N28 C27 2VC sing 25 n y N14 O13 2VC sing 26 n n C30 C31 2VC doub 27 n y N08 C09 2VC sing 28 n n C23 C22 2VC doub 29 e n C23 S24 2VC sing 30 n n N20 C21 2VC sing 31 n n N20 C18 2VC sing 32 n n C09 C18 2VC sing 33 n n C09 C10 2VC sing 34 n n C27 S24 2VC sing 35 n n C27 N32 2VC doub 36 n y O25 S24 2VC doub 37 n n C21 C22 2VC sing 38 n n C18 O19 2VC doub 39 n n O13 C12 2VC sing 40 n n S24 O26 2VC doub 41 n n C31 N32 2VC sing 42 n y C12 C11 2VC sing 43 n n C10 C11 2VC sing 44 n n C10 H1 2VC sing 45 n n C10 H2 2VC sing 46 n n C21 H3 2VC sing 47 n n C22 H4 2VC sing 48 n n C01 H6 2VC sing 49 n n C01 H7 2VC sing 50 n n C01 H8 2VC sing 51 n n C03 H10 2VC sing 52 n n C03 H11 2VC sing 53 n n C04 H12 2VC sing 54 n n C04 H13 2VC sing 55 n n N08 H14 2VC sing 56 n n C09 H15 2VC sing 57 n n C11 H16 2VC sing 58 n n C11 H17 2VC sing 59 n n C12 H18 2VC sing 60 n n C12 H19 2VC sing 61 n n N14 H20 2VC sing 62 n n N16 H21 2VC sing 63 n n N16 H22 2VC sing 64 n n N17 H23 2VC sing 65 n n N20 H24 2VC sing 66 n n C23 H25 2VC sing 67 n n C29 H27 2VC sing 68 n n C30 H28 2VC sing 69 n n C31 H29 2VC sing 70 n n C33 H30 2VC sing 71 n n C33 H31 2VC sing 72 n n C34 H32 2VC sing 73 n n C34 H33 2VC sing 74 n n C36 H34 2VC sing 75 n n C37 H35 2VC sing 76 n n C38 H36 2VC sing 77 n n C39 H37 2VC sing 78 n n C40 H38 2VC sing 79 n n C41 H39 2VC sing 80 n n C41 H40 2VC sing 81 n n C42 H41 2VC sing 82 n n C42 H42 2VC sing 83 n n # _atom_sites.entry_id 4XUI _atom_sites.fract_transf_matrix[1][1] 0.009881 _atom_sites.fract_transf_matrix[1][2] 0.005705 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 2VC A 1 301 1 2VC LIG . E 2 2VC B 1 301 1 2VC LIG . F 2 2VC C 1 301 1 2VC LIG . G 3 EDO C 1 302 1 EDO ETH . H 3 EDO C 1 303 1 EDO ETH . I 3 EDO C 1 304 1 EDO ETH . J 3 EDO C 1 305 1 EDO ETH . K 4 HOH A 1 401 51 HOH HOH . K 4 HOH A 2 402 59 HOH HOH . K 4 HOH A 3 403 44 HOH HOH . K 4 HOH A 4 404 38 HOH HOH . K 4 HOH A 5 405 81 HOH HOH . K 4 HOH A 6 406 45 HOH HOH . K 4 HOH A 7 407 3 HOH HOH . K 4 HOH A 8 408 5 HOH HOH . K 4 HOH A 9 409 25 HOH HOH . K 4 HOH A 10 410 26 HOH HOH . K 4 HOH A 11 411 28 HOH HOH . K 4 HOH A 12 412 29 HOH HOH . K 4 HOH A 13 413 30 HOH HOH . K 4 HOH A 14 414 31 HOH HOH . K 4 HOH A 15 415 37 HOH HOH . K 4 HOH A 16 416 39 HOH HOH . K 4 HOH A 17 417 46 HOH HOH . K 4 HOH A 18 418 52 HOH HOH . K 4 HOH A 19 419 53 HOH HOH . K 4 HOH A 20 420 54 HOH HOH . K 4 HOH A 21 421 55 HOH HOH . K 4 HOH A 22 422 56 HOH HOH . K 4 HOH A 23 423 57 HOH HOH . K 4 HOH A 24 424 58 HOH HOH . K 4 HOH A 25 425 76 HOH HOH . K 4 HOH A 26 426 77 HOH HOH . L 4 HOH B 1 401 61 HOH HOH . L 4 HOH B 2 402 42 HOH HOH . L 4 HOH B 3 403 78 HOH HOH . L 4 HOH B 4 404 75 HOH HOH . L 4 HOH B 5 405 1 HOH HOH . L 4 HOH B 6 406 2 HOH HOH . L 4 HOH B 7 407 4 HOH HOH . L 4 HOH B 8 408 6 HOH HOH . L 4 HOH B 9 409 7 HOH HOH . L 4 HOH B 10 410 8 HOH HOH . L 4 HOH B 11 411 43 HOH HOH . L 4 HOH B 12 412 48 HOH HOH . L 4 HOH B 13 413 49 HOH HOH . L 4 HOH B 14 414 60 HOH HOH . L 4 HOH B 15 415 62 HOH HOH . L 4 HOH B 16 416 63 HOH HOH . L 4 HOH B 17 417 64 HOH HOH . L 4 HOH B 18 418 65 HOH HOH . L 4 HOH B 19 419 66 HOH HOH . L 4 HOH B 20 420 67 HOH HOH . L 4 HOH B 21 421 80 HOH HOH . M 4 HOH C 1 401 14 HOH HOH . M 4 HOH C 2 402 68 HOH HOH . M 4 HOH C 3 403 69 HOH HOH . M 4 HOH C 4 404 33 HOH HOH . M 4 HOH C 5 405 17 HOH HOH . M 4 HOH C 6 406 16 HOH HOH . M 4 HOH C 7 407 70 HOH HOH . M 4 HOH C 8 408 23 HOH HOH . M 4 HOH C 9 409 72 HOH HOH . M 4 HOH C 10 410 22 HOH HOH . M 4 HOH C 11 411 35 HOH HOH . M 4 HOH C 12 412 9 HOH HOH . M 4 HOH C 13 413 10 HOH HOH . M 4 HOH C 14 414 11 HOH HOH . M 4 HOH C 15 415 13 HOH HOH . M 4 HOH C 16 416 15 HOH HOH . M 4 HOH C 17 417 18 HOH HOH . M 4 HOH C 18 418 19 HOH HOH . M 4 HOH C 19 419 20 HOH HOH . M 4 HOH C 20 420 21 HOH HOH . M 4 HOH C 21 421 24 HOH HOH . M 4 HOH C 22 422 27 HOH HOH . M 4 HOH C 23 423 32 HOH HOH . M 4 HOH C 24 424 34 HOH HOH . M 4 HOH C 25 425 36 HOH HOH . M 4 HOH C 26 426 40 HOH HOH . M 4 HOH C 27 427 41 HOH HOH . M 4 HOH C 28 428 47 HOH HOH . M 4 HOH C 29 429 50 HOH HOH . M 4 HOH C 30 430 71 HOH HOH . M 4 HOH C 31 431 73 HOH HOH . M 4 HOH C 32 432 74 HOH HOH . M 4 HOH C 33 433 79 HOH HOH . M 4 HOH C 34 434 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 2VC . . . F 2 47.601 -10.871 -4.308 1 26.66 ? C10 2VC 301 C 1 HETATM 2 C C15 2VC . . . F 2 50.088 -7.655 -6.249 1 47.08 ? C15 2VC 301 C 1 HETATM 3 C C21 2VC . . . F 2 43.421 -13.304 -4.629 1 30.67 ? C21 2VC 301 C 1 HETATM 4 C C22 2VC . . . F 2 43.325 -14.695 -3.973 1 31.07 ? C22 2VC 301 C 1 HETATM 5 C C01 2VC . . . F 2 45.615 -4.476 -8.949 1 51.24 ? C01 2VC 301 C 1 HETATM 6 N N02 2VC . . . F 2 45.315 -5.395 -7.87 1 53.19 ? N02 2VC 301 C 1 HETATM 7 C C03 2VC . . . F 2 43.976 -5.33 -7.303 1 43.56 ? C03 2VC 301 C 1 HETATM 8 C C04 2VC . . . F 2 43.624 -6.576 -6.552 1 38.47 ? C04 2VC 301 C 1 HETATM 9 N N05 2VC . . . F 2 44.773 -7.195 -6.003 1 34.47 ? N05 2VC 301 C 1 HETATM 10 C C06 2VC . . . F 2 44.893 -8.61 -5.858 1 37.01 ? C06 2VC 301 C 1 HETATM 11 O O07 2VC . . . F 2 43.973 -9.312 -6.214 1 36.6 ? O07 2VC 301 C 1 HETATM 12 N N08 2VC . . . F 2 46.111 -9.185 -5.28 1 43.43 ? N08 2VC 301 C 1 HETATM 13 C C09 2VC . . . F 2 46.331 -10.624 -5.087 1 36.52 ? C09 2VC 301 C 1 HETATM 14 C C11 2VC . . . F 2 48.025 -9.851 -3.241 1 33.52 ? C11 2VC 301 C 1 HETATM 15 C C12 2VC . . . F 2 49.487 -9.571 -3.068 1 37.21 ? C12 2VC 301 C 1 HETATM 16 O O13 2VC . . . F 2 50.105 -8.656 -3.991 1 42.94 ? O13 2VC 301 C 1 HETATM 17 N N14 2VC . . . F 2 49.654 -8.632 -5.277 1 51.35 ? N14 2VC 301 C 1 HETATM 18 N N16 2VC . . . F 2 49.586 -7.708 -7.484 1 53.59 ? N16 2VC 301 C 1 HETATM 19 N N17 2VC . . . F 2 51.025 -6.657 -5.891 1 37.17 ? N17 2VC 301 C 1 HETATM 20 C C18 2VC . . . F 2 45.159 -11.471 -4.446 1 33.15 ? C18 2VC 301 C 1 HETATM 21 O O19 2VC . . . F 2 44.784 -11.273 -3.257 1 25.06 ? O19 2VC 301 C 1 HETATM 22 N N20 2VC . . . F 2 44.519 -12.494 -5.239 1 34.87 ? N20 2VC 301 C 1 HETATM 23 C C23 2VC . . . F 2 44.213 -15.666 -4.4 1 33.11 ? C23 2VC 301 C 1 HETATM 24 S S24 2VC . . . F 2 44.111 -17.362 -3.786 1 27.05 ? S24 2VC 301 C 1 HETATM 25 O O25 2VC . . . F 2 45.197 -18.116 -4.306 1 28.63 ? O25 2VC 301 C 1 HETATM 26 O O26 2VC . . . F 2 44.402 -17.462 -2.35 1 25.62 ? O26 2VC 301 C 1 HETATM 27 C C27 2VC . . . F 2 42.506 -18.009 -4.12 1 28.3 ? C27 2VC 301 C 1 HETATM 28 N N28 2VC . . . F 2 41.62 -17.27 -4.843 1 33.87 ? N28 2VC 301 C 1 HETATM 29 C C29 2VC . . . F 2 40.374 -17.697 -5.133 1 31.23 ? C29 2VC 301 C 1 HETATM 30 C C30 2VC . . . F 2 39.986 -18.97 -4.646 1 31.62 ? C30 2VC 301 C 1 HETATM 31 C C31 2VC . . . F 2 40.902 -19.73 -3.896 1 31.24 ? C31 2VC 301 C 1 HETATM 32 N N32 2VC . . . F 2 42.133 -19.245 -3.645 1 29.78 ? N32 2VC 301 C 1 HETATM 33 C C33 2VC . . . F 2 42.791 -13.836 -5.959 1 23.89 ? C33 2VC 301 C 1 HETATM 34 C C34 2VC . . . F 2 41.688 -13.032 -6.549 1 26.96 ? C34 2VC 301 C 1 HETATM 35 C C35 2VC . . . F 2 40.668 -13.705 -7.438 1 21.85 ? C35 2VC 301 C 1 HETATM 36 C C36 2VC . . . F 2 39.436 -14.15 -6.903 1 26.5 ? C36 2VC 301 C 1 HETATM 37 C C37 2VC . . . F 2 38.458 -14.773 -7.728 1 23.35 ? C37 2VC 301 C 1 HETATM 38 C C38 2VC . . . F 2 38.737 -14.948 -9.097 1 29.44 ? C38 2VC 301 C 1 HETATM 39 C C39 2VC . . . F 2 39.976 -14.507 -9.64 1 31.2 ? C39 2VC 301 C 1 HETATM 40 C C40 2VC . . . F 2 40.938 -13.881 -8.811 1 26.93 ? C40 2VC 301 C 1 HETATM 41 C C41 2VC . . . F 2 45.785 -6.276 -5.629 1 38.53 ? C41 2VC 301 C 1 HETATM 42 C C42 2VC . . . F 2 46.334 -5.601 -6.847 1 48.89 ? C42 2VC 301 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 42 #