data_4XUL # _model_server_result.job_id iNERbB9I_LKxgobuQD5rzQ _model_server_result.datetime_utc '2024-10-19 21:42:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xul # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4XUL # _exptl.entry_id 4XUL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XUL _cell.length_a 99.36 _cell.length_b 99.36 _cell.length_c 168.994 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XUL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 63 A ASP 61 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc2 A OD1 ASP 63 A ASP 61 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc3 A OD1 ASP 65 A ASP 63 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 A OD2 ASP 65 A ASP 63 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc5 A O ILE 90 A ILE 88 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc6 A O ASP 93 A ASP 91 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc7 A O ILE 96 A ILE 94 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc8 A OD2 ASP 210 A ASP 208 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc9 B MG MG . A MG 401 1_555 E O1G GTP . A GTP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc10 B MG MG . A MG 401 1_555 F O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc11 B MG MG . A MG 401 1_555 F O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc12 C MG MG . A MG 402 1_555 E O1G GTP . A GTP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc13 C MG MG . A MG 402 1_555 E O1A GTP . A GTP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc14 C MG MG . A MG 402 1_555 E O1B GTP . A GTP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc15 C MG MG . A MG 402 1_555 F O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc16 D NA NA . A NA 403 1_555 F O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc17 D NA NA . A NA 403 1_555 F O HOH . A HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XUL _atom_sites.fract_transf_matrix[1][1] 0.010064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 379 MG MG . C 2 MG A 1 402 380 MG MG . D 3 NA A 1 403 1 NA NA . E 4 GTP A 1 404 1 GTP GTP . F 5 HOH A 1 501 133 HOH HOH . F 5 HOH A 2 502 170 HOH HOH . F 5 HOH A 3 503 18 HOH HOH . F 5 HOH A 4 504 5 HOH HOH . F 5 HOH A 5 505 190 HOH HOH . F 5 HOH A 6 506 19 HOH HOH . F 5 HOH A 7 507 71 HOH HOH . F 5 HOH A 8 508 33 HOH HOH . F 5 HOH A 9 509 64 HOH HOH . F 5 HOH A 10 510 56 HOH HOH . F 5 HOH A 11 511 161 HOH HOH . F 5 HOH A 12 512 219 HOH HOH . F 5 HOH A 13 513 155 HOH HOH . F 5 HOH A 14 514 22 HOH HOH . F 5 HOH A 15 515 177 HOH HOH . F 5 HOH A 16 516 209 HOH HOH . F 5 HOH A 17 517 4 HOH HOH . F 5 HOH A 18 518 51 HOH HOH . F 5 HOH A 19 519 222 HOH HOH . F 5 HOH A 20 520 96 HOH HOH . F 5 HOH A 21 521 74 HOH HOH . F 5 HOH A 22 522 10 HOH HOH . F 5 HOH A 23 523 79 HOH HOH . F 5 HOH A 24 524 107 HOH HOH . F 5 HOH A 25 525 32 HOH HOH . F 5 HOH A 26 526 80 HOH HOH . F 5 HOH A 27 527 49 HOH HOH . F 5 HOH A 28 528 156 HOH HOH . F 5 HOH A 29 529 118 HOH HOH . F 5 HOH A 30 530 134 HOH HOH . F 5 HOH A 31 531 9 HOH HOH . F 5 HOH A 32 532 41 HOH HOH . F 5 HOH A 33 533 98 HOH HOH . F 5 HOH A 34 534 95 HOH HOH . F 5 HOH A 35 535 110 HOH HOH . F 5 HOH A 36 536 117 HOH HOH . F 5 HOH A 37 537 87 HOH HOH . F 5 HOH A 38 538 131 HOH HOH . F 5 HOH A 39 539 208 HOH HOH . F 5 HOH A 40 540 168 HOH HOH . F 5 HOH A 41 541 112 HOH HOH . F 5 HOH A 42 542 135 HOH HOH . F 5 HOH A 43 543 102 HOH HOH . F 5 HOH A 44 544 89 HOH HOH . F 5 HOH A 45 545 184 HOH HOH . F 5 HOH A 46 546 200 HOH HOH . F 5 HOH A 47 547 106 HOH HOH . F 5 HOH A 48 548 160 HOH HOH . F 5 HOH A 49 549 179 HOH HOH . F 5 HOH A 50 550 142 HOH HOH . F 5 HOH A 51 551 139 HOH HOH . F 5 HOH A 52 552 137 HOH HOH . F 5 HOH A 53 553 52 HOH HOH . F 5 HOH A 54 554 180 HOH HOH . F 5 HOH A 55 555 189 HOH HOH . F 5 HOH A 56 556 182 HOH HOH . F 5 HOH A 57 557 1 HOH HOH . F 5 HOH A 58 558 2 HOH HOH . F 5 HOH A 59 559 3 HOH HOH . F 5 HOH A 60 560 6 HOH HOH . F 5 HOH A 61 561 7 HOH HOH . F 5 HOH A 62 562 8 HOH HOH . F 5 HOH A 63 563 11 HOH HOH . F 5 HOH A 64 564 12 HOH HOH . F 5 HOH A 65 565 13 HOH HOH . F 5 HOH A 66 566 14 HOH HOH . F 5 HOH A 67 567 15 HOH HOH . F 5 HOH A 68 568 16 HOH HOH . F 5 HOH A 69 569 17 HOH HOH . F 5 HOH A 70 570 20 HOH HOH . F 5 HOH A 71 571 21 HOH HOH . F 5 HOH A 72 572 23 HOH HOH . F 5 HOH A 73 573 24 HOH HOH . F 5 HOH A 74 574 25 HOH HOH . F 5 HOH A 75 575 26 HOH HOH . F 5 HOH A 76 576 27 HOH HOH . F 5 HOH A 77 577 28 HOH HOH . F 5 HOH A 78 578 29 HOH HOH . F 5 HOH A 79 579 30 HOH HOH . F 5 HOH A 80 580 31 HOH HOH . F 5 HOH A 81 581 34 HOH HOH . F 5 HOH A 82 582 35 HOH HOH . F 5 HOH A 83 583 36 HOH HOH . F 5 HOH A 84 584 37 HOH HOH . F 5 HOH A 85 585 38 HOH HOH . F 5 HOH A 86 586 39 HOH HOH . F 5 HOH A 87 587 40 HOH HOH . F 5 HOH A 88 588 42 HOH HOH . F 5 HOH A 89 589 43 HOH HOH . F 5 HOH A 90 590 44 HOH HOH . F 5 HOH A 91 591 45 HOH HOH . F 5 HOH A 92 592 46 HOH HOH . F 5 HOH A 93 593 47 HOH HOH . F 5 HOH A 94 594 48 HOH HOH . F 5 HOH A 95 595 50 HOH HOH . F 5 HOH A 96 596 53 HOH HOH . F 5 HOH A 97 597 54 HOH HOH . F 5 HOH A 98 598 55 HOH HOH . F 5 HOH A 99 599 57 HOH HOH . F 5 HOH A 100 600 58 HOH HOH . F 5 HOH A 101 601 59 HOH HOH . F 5 HOH A 102 602 60 HOH HOH . F 5 HOH A 103 603 61 HOH HOH . F 5 HOH A 104 604 62 HOH HOH . F 5 HOH A 105 605 63 HOH HOH . F 5 HOH A 106 606 65 HOH HOH . F 5 HOH A 107 607 66 HOH HOH . F 5 HOH A 108 608 67 HOH HOH . F 5 HOH A 109 609 68 HOH HOH . F 5 HOH A 110 610 69 HOH HOH . F 5 HOH A 111 611 70 HOH HOH . F 5 HOH A 112 612 72 HOH HOH . F 5 HOH A 113 613 73 HOH HOH . F 5 HOH A 114 614 75 HOH HOH . F 5 HOH A 115 615 76 HOH HOH . F 5 HOH A 116 616 77 HOH HOH . F 5 HOH A 117 617 78 HOH HOH . F 5 HOH A 118 618 81 HOH HOH . F 5 HOH A 119 619 83 HOH HOH . F 5 HOH A 120 620 84 HOH HOH . F 5 HOH A 121 621 85 HOH HOH . F 5 HOH A 122 622 86 HOH HOH . F 5 HOH A 123 623 88 HOH HOH . F 5 HOH A 124 624 90 HOH HOH . F 5 HOH A 125 625 92 HOH HOH . F 5 HOH A 126 626 93 HOH HOH . F 5 HOH A 127 627 94 HOH HOH . F 5 HOH A 128 628 97 HOH HOH . F 5 HOH A 129 629 99 HOH HOH . F 5 HOH A 130 630 100 HOH HOH . F 5 HOH A 131 631 101 HOH HOH . F 5 HOH A 132 632 103 HOH HOH . F 5 HOH A 133 633 105 HOH HOH . F 5 HOH A 134 634 109 HOH HOH . F 5 HOH A 135 635 111 HOH HOH . F 5 HOH A 136 636 113 HOH HOH . F 5 HOH A 137 637 114 HOH HOH . F 5 HOH A 138 638 115 HOH HOH . F 5 HOH A 139 639 116 HOH HOH . F 5 HOH A 140 640 119 HOH HOH . F 5 HOH A 141 641 121 HOH HOH . F 5 HOH A 142 642 122 HOH HOH . F 5 HOH A 143 643 123 HOH HOH . F 5 HOH A 144 644 124 HOH HOH . F 5 HOH A 145 645 125 HOH HOH . F 5 HOH A 146 646 126 HOH HOH . F 5 HOH A 147 647 127 HOH HOH . F 5 HOH A 148 648 128 HOH HOH . F 5 HOH A 149 649 129 HOH HOH . F 5 HOH A 150 650 130 HOH HOH . F 5 HOH A 151 651 132 HOH HOH . F 5 HOH A 152 652 136 HOH HOH . F 5 HOH A 153 653 138 HOH HOH . F 5 HOH A 154 654 140 HOH HOH . F 5 HOH A 155 655 141 HOH HOH . F 5 HOH A 156 656 143 HOH HOH . F 5 HOH A 157 657 144 HOH HOH . F 5 HOH A 158 658 145 HOH HOH . F 5 HOH A 159 659 146 HOH HOH . F 5 HOH A 160 660 147 HOH HOH . F 5 HOH A 161 661 148 HOH HOH . F 5 HOH A 162 662 149 HOH HOH . F 5 HOH A 163 663 150 HOH HOH . F 5 HOH A 164 664 151 HOH HOH . F 5 HOH A 165 665 153 HOH HOH . F 5 HOH A 166 666 154 HOH HOH . F 5 HOH A 167 667 157 HOH HOH . F 5 HOH A 168 668 158 HOH HOH . F 5 HOH A 169 669 159 HOH HOH . F 5 HOH A 170 670 162 HOH HOH . F 5 HOH A 171 671 164 HOH HOH . F 5 HOH A 172 672 165 HOH HOH . F 5 HOH A 173 673 167 HOH HOH . F 5 HOH A 174 674 169 HOH HOH . F 5 HOH A 175 675 171 HOH HOH . F 5 HOH A 176 676 172 HOH HOH . F 5 HOH A 177 677 173 HOH HOH . F 5 HOH A 178 678 174 HOH HOH . F 5 HOH A 179 679 175 HOH HOH . F 5 HOH A 180 680 176 HOH HOH . F 5 HOH A 181 681 178 HOH HOH . F 5 HOH A 182 682 185 HOH HOH . F 5 HOH A 183 683 186 HOH HOH . F 5 HOH A 184 684 187 HOH HOH . F 5 HOH A 185 685 188 HOH HOH . F 5 HOH A 186 686 192 HOH HOH . F 5 HOH A 187 687 193 HOH HOH . F 5 HOH A 188 688 194 HOH HOH . F 5 HOH A 189 689 195 HOH HOH . F 5 HOH A 190 690 196 HOH HOH . F 5 HOH A 191 691 197 HOH HOH . F 5 HOH A 192 692 198 HOH HOH . F 5 HOH A 193 693 199 HOH HOH . F 5 HOH A 194 694 201 HOH HOH . F 5 HOH A 195 695 202 HOH HOH . F 5 HOH A 196 696 203 HOH HOH . F 5 HOH A 197 697 205 HOH HOH . F 5 HOH A 198 698 206 HOH HOH . F 5 HOH A 199 699 207 HOH HOH . F 5 HOH A 200 700 210 HOH HOH . F 5 HOH A 201 701 211 HOH HOH . F 5 HOH A 202 702 212 HOH HOH . F 5 HOH A 203 703 213 HOH HOH . F 5 HOH A 204 704 214 HOH HOH . F 5 HOH A 205 705 215 HOH HOH . F 5 HOH A 206 706 216 HOH HOH . F 5 HOH A 207 707 218 HOH HOH . F 5 HOH A 208 708 220 HOH HOH . F 5 HOH A 209 709 221 HOH HOH . F 5 HOH A 210 710 223 HOH HOH . F 5 HOH A 211 711 224 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 14.137 _atom_site.Cartn_y 58.303 _atom_site.Cartn_z 46.628 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #