data_4XVD # _model_server_result.job_id el7qQ_Afdvze2V8vD4BVag _model_server_result.datetime_utc '2024-12-25 05:17:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xvd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4XVD # _exptl.entry_id 4XVD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XVD _cell.length_a 145.795 _cell.length_b 145.795 _cell.length_c 74.287 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XVD _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 4XVD _atom_sites.fract_transf_matrix[1][1] 0.006859 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 401 1 NAP NAP . D 3 WDV A 1 402 1 WDV WDV . E 2 NAP B 1 401 1 NAP NAP . F 3 WDV B 1 402 1 WDV WDV . G 4 HOH A 1 501 2 HOH HOH . G 4 HOH A 2 502 1 HOH HOH . G 4 HOH A 3 503 3 HOH HOH . G 4 HOH A 4 504 4 HOH HOH . G 4 HOH A 5 505 5 HOH HOH . G 4 HOH A 6 506 6 HOH HOH . G 4 HOH A 7 507 10 HOH HOH . G 4 HOH A 8 508 11 HOH HOH . G 4 HOH A 9 509 12 HOH HOH . G 4 HOH A 10 510 13 HOH HOH . H 4 HOH B 1 501 7 HOH HOH . H 4 HOH B 2 502 8 HOH HOH . H 4 HOH B 3 503 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 2 155.534 34.763 80.569 1 42.22 ? PA NAP 401 B 1 HETATM 2 O O1A NAP . . . E 2 155.511 33.27 80.558 1 34.86 ? O1A NAP 401 B 1 HETATM 3 O O2A NAP . . . E 2 155.993 35.625 79.442 1 38.88 ? O2A NAP 401 B 1 HETATM 4 O O5B NAP . . . E 2 156.295 35.328 81.89 1 45.7 ? O5B NAP 401 B 1 HETATM 5 C C5B NAP . . . E 2 156.241 34.506 83.056 1 51.48 ? C5B NAP 401 B 1 HETATM 6 C C4B NAP . . . E 2 157.02 35.041 84.241 1 56.18 ? C4B NAP 401 B 1 HETATM 7 O O4B NAP . . . E 2 158.415 34.889 84.023 1 60.97 ? O4B NAP 401 B 1 HETATM 8 C C3B NAP . . . E 2 156.776 36.503 84.471 1 59.38 ? C3B NAP 401 B 1 HETATM 9 O O3B NAP . . . E 2 155.846 36.648 85.524 1 54.07 ? O3B NAP 401 B 1 HETATM 10 C C2B NAP . . . E 2 158.127 37.082 84.833 1 61.79 ? C2B NAP 401 B 1 HETATM 11 O O2B NAP . . . E 2 158.214 37.609 86.144 1 62.63 ? O2B NAP 401 B 1 HETATM 12 C C1B NAP . . . E 2 159.075 35.927 84.729 1 62.62 ? C1B NAP 401 B 1 HETATM 13 N N9A NAP . . . E 2 160.179 36.427 83.951 1 67.18 ? N9A NAP 401 B 1 HETATM 14 C C8A NAP . . . E 2 160.072 37.267 82.889 1 68.45 ? C8A NAP 401 B 1 HETATM 15 N N7A NAP . . . E 2 161.252 37.574 82.412 1 72.63 ? N7A NAP 401 B 1 HETATM 16 C C5A NAP . . . E 2 162.149 36.91 83.204 1 71.2 ? C5A NAP 401 B 1 HETATM 17 C C6A NAP . . . E 2 163.522 36.856 83.177 1 64.94 ? C6A NAP 401 B 1 HETATM 18 N N6A NAP . . . E 2 164.26 37.546 82.231 1 59.51 ? N6A NAP 401 B 1 HETATM 19 N N1A NAP . . . E 2 164.124 36.115 84.095 1 65.15 ? N1A NAP 401 B 1 HETATM 20 C C2A NAP . . . E 2 163.379 35.473 84.987 1 66.7 ? C2A NAP 401 B 1 HETATM 21 N N3A NAP . . . E 2 162.059 35.447 85.11 1 75.26 ? N3A NAP 401 B 1 HETATM 22 C C4A NAP . . . E 2 161.5 36.198 84.17 1 72.71 ? C4A NAP 401 B 1 HETATM 23 O O3 NAP . . . E 2 154.044 35.351 80.897 1 44.67 ? O3 NAP 401 B 1 HETATM 24 P PN NAP . . . E 2 152.485 35.156 80.436 1 42.32 ? PN NAP 401 B 1 HETATM 25 O O1N NAP . . . E 2 152.037 33.754 80.738 1 37.31 ? O1N NAP 401 B 1 HETATM 26 O O2N NAP . . . E 2 151.829 36.391 80.901 1 39.97 ? O2N NAP 401 B 1 HETATM 27 O O5D NAP . . . E 2 152.552 35.385 78.863 1 39.65 ? O5D NAP 401 B 1 HETATM 28 C C5D NAP . . . E 2 152.899 36.694 78.529 1 39.62 ? C5D NAP 401 B 1 HETATM 29 C C4D NAP . . . E 2 151.788 37.275 77.716 1 42.92 ? C4D NAP 401 B 1 HETATM 30 O O4D NAP . . . E 2 151.144 36.285 76.91 1 42.98 ? O4D NAP 401 B 1 HETATM 31 C C3D NAP . . . E 2 150.707 37.783 78.612 1 42.65 ? C3D NAP 401 B 1 HETATM 32 O O3D NAP . . . E 2 151.061 39.063 79.088 1 42.77 ? O3D NAP 401 B 1 HETATM 33 C C2D NAP . . . E 2 149.62 37.892 77.61 1 41.98 ? C2D NAP 401 B 1 HETATM 34 O O2D NAP . . . E 2 149.951 39.048 76.884 1 42.56 ? O2D NAP 401 B 1 HETATM 35 C C1D NAP . . . E 2 149.829 36.75 76.657 1 40.29 ? C1D NAP 401 B 1 HETATM 36 N N1N NAP . . . E 2 148.872 35.707 76.954 1 36.82 ? N1N NAP 401 B 1 HETATM 37 C C2N NAP . . . E 2 147.878 35.484 76.116 1 36.53 ? C2N NAP 401 B 1 HETATM 38 C C3N NAP . . . E 2 146.978 34.492 76.42 1 36.34 ? C3N NAP 401 B 1 HETATM 39 C C7N NAP . . . E 2 145.864 34.188 75.521 1 34.01 ? C7N NAP 401 B 1 HETATM 40 O O7N NAP . . . E 2 144.885 33.567 75.885 1 30.06 ? O7N NAP 401 B 1 HETATM 41 N N7N NAP . . . E 2 146.08 34.643 74.268 1 31.92 ? N7N NAP 401 B 1 HETATM 42 C C4N NAP . . . E 2 147.109 33.746 77.557 1 37.01 ? C4N NAP 401 B 1 HETATM 43 C C5N NAP . . . E 2 148.154 34.022 78.391 1 37.1 ? C5N NAP 401 B 1 HETATM 44 C C6N NAP . . . E 2 149.02 35.016 78.059 1 36.07 ? C6N NAP 401 B 1 HETATM 45 P P2B NAP . . . E 2 158.379 39.216 86.381 1 67.87 ? P2B NAP 401 B 1 HETATM 46 O O1X NAP . . . E 2 157.457 39.953 85.459 1 61.69 ? O1X NAP 401 B 1 HETATM 47 O O2X NAP . . . E 2 158.022 39.241 87.845 1 65.94 ? O2X NAP 401 B 1 HETATM 48 O O3X NAP . . . E 2 159.784 39.629 86.124 1 65.11 ? O3X NAP 401 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #