data_4XVD # _model_server_result.job_id oKyDyMaxXPWfjpVwkU6PxA _model_server_result.datetime_utc '2024-12-25 05:13:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xvd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 4XVD # _exptl.entry_id 4XVD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.349 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-nitro-2-({4-[3-(trifluoromethyl)phenyl]piperazin-1-yl}methyl)phenol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XVD _cell.length_a 145.795 _cell.length_b 145.795 _cell.length_c 74.287 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XVD _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C18 H18 F3 N3 O3' _chem_comp.formula_weight 381.349 _chem_comp.id WDV _chem_comp.mon_nstd_flag . _chem_comp.name 4-nitro-2-({4-[3-(trifluoromethyl)phenyl]piperazin-1-yl}methyl)phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O26 N25 WDV doub 456 n n O27 N25 WDV sing 457 n n N25 C21 WDV sing 458 n n C21 C19 WDV sing 459 n y C21 C24 WDV doub 460 n y C19 C18 WDV doub 461 n y C24 C22 WDV sing 462 n y F15 C12 WDV sing 463 n n C18 C17 WDV sing 464 n n C18 C20 WDV sing 465 n y C9 C5 WDV sing 466 n n C9 N13 WDV sing 467 n n C22 C20 WDV doub 468 n y C17 N13 WDV sing 469 n n C5 N2 WDV sing 470 n n C20 O23 WDV sing 471 n n N13 C10 WDV sing 472 n n C12 F16 WDV sing 473 n n C12 F14 WDV sing 474 n n C12 C7 WDV sing 475 n n C3 C7 WDV doub 476 n y C3 C1 WDV sing 477 n y N2 C1 WDV sing 478 n n N2 C6 WDV sing 479 n n C7 C11 WDV sing 480 n y C10 C6 WDV sing 481 n n C1 C4 WDV doub 482 n y C11 C8 WDV doub 483 n y C4 C8 WDV sing 484 n y C8 H1 WDV sing 485 n n C11 H2 WDV sing 486 n n C4 H3 WDV sing 487 n n C24 H4 WDV sing 488 n n C22 H5 WDV sing 489 n n C3 H6 WDV sing 490 n n C19 H7 WDV sing 491 n n C5 H8 WDV sing 492 n n C5 H9 WDV sing 493 n n C6 H10 WDV sing 494 n n C6 H11 WDV sing 495 n n C9 H12 WDV sing 496 n n C9 H13 WDV sing 497 n n C10 H14 WDV sing 498 n n C10 H15 WDV sing 499 n n C17 H16 WDV sing 500 n n C17 H17 WDV sing 501 n n O23 H19 WDV sing 502 n n # _atom_sites.entry_id 4XVD _atom_sites.fract_transf_matrix[1][1] 0.006859 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 401 1 NAP NAP . D 3 WDV A 1 402 1 WDV WDV . E 2 NAP B 1 401 1 NAP NAP . F 3 WDV B 1 402 1 WDV WDV . G 4 HOH A 1 501 2 HOH HOH . G 4 HOH A 2 502 1 HOH HOH . G 4 HOH A 3 503 3 HOH HOH . G 4 HOH A 4 504 4 HOH HOH . G 4 HOH A 5 505 5 HOH HOH . G 4 HOH A 6 506 6 HOH HOH . G 4 HOH A 7 507 10 HOH HOH . G 4 HOH A 8 508 11 HOH HOH . G 4 HOH A 9 509 12 HOH HOH . G 4 HOH A 10 510 13 HOH HOH . H 4 HOH B 1 501 7 HOH HOH . H 4 HOH B 2 502 8 HOH HOH . H 4 HOH B 3 503 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 WDV . . . F 3 143.011 26.987 76.307 1 34.24 ? C8 WDV 402 B 1 HETATM 2 C C11 WDV . . . F 3 142.762 25.994 77.218 1 35.36 ? C11 WDV 402 B 1 HETATM 3 C C4 WDV . . . F 3 143.024 28.302 76.713 1 35.54 ? C4 WDV 402 B 1 HETATM 4 C C24 WDV . . . F 3 146.898 35.706 81.291 1 51.48 ? C24 WDV 402 B 1 HETATM 5 C C22 WDV . . . F 3 146.377 35.975 80.049 1 47.91 ? C22 WDV 402 B 1 HETATM 6 C C3 WDV . . . F 3 142.558 27.637 78.932 1 36.84 ? C3 WDV 402 B 1 HETATM 7 C C19 WDV . . . F 3 145.064 34.178 81.706 1 46.53 ? C19 WDV 402 B 1 HETATM 8 C C7 WDV . . . F 3 142.538 26.319 78.536 1 37.41 ? C7 WDV 402 B 1 HETATM 9 C C18 WDV . . . F 3 144.548 34.455 80.454 1 41.83 ? C18 WDV 402 B 1 HETATM 10 C C1 WDV . . . F 3 142.801 28.648 78.029 1 37.11 ? C1 WDV 402 B 1 HETATM 11 C C21 WDV . . . F 3 146.234 34.814 82.104 1 53.16 ? C21 WDV 402 B 1 HETATM 12 C C20 WDV . . . F 3 145.216 35.355 79.651 1 43.28 ? C20 WDV 402 B 1 HETATM 13 C C5 WDV . . . F 3 143.261 30.125 79.833 1 36.94 ? C5 WDV 402 B 1 HETATM 14 C C6 WDV . . . F 3 143.244 30.99 77.516 1 37.61 ? C6 WDV 402 B 1 HETATM 15 C C9 WDV . . . F 3 142.803 31.477 80.332 1 37.31 ? C9 WDV 402 B 1 HETATM 16 C C10 WDV . . . F 3 142.839 32.353 78.06 1 37.8 ? C10 WDV 402 B 1 HETATM 17 C C17 WDV . . . F 3 143.292 33.823 79.979 1 40.02 ? C17 WDV 402 B 1 HETATM 18 C C12 WDV . . . F 3 142.268 25.261 79.557 1 39.17 ? C12 WDV 402 B 1 HETATM 19 N N2 WDV . . . F 3 142.798 29.988 78.472 1 36.95 ? N2 WDV 402 B 1 HETATM 20 N N13 WDV . . . F 3 143.415 32.466 79.424 1 37.76 ? N13 WDV 402 B 1 HETATM 21 N N25 WDV . . . F 3 146.842 34.581 83.407 1 57.28 ? N25 WDV 402 B 1 HETATM 22 O O27 WDV . . . F 3 147.988 35.022 83.597 1 53.55 ? O27 WDV 402 B 1 HETATM 23 O O26 WDV . . . F 3 146.176 33.96 84.244 1 61.85 ? O26 WDV 402 B 1 HETATM 24 O O23 WDV . . . F 3 144.767 35.676 78.404 1 40.08 ? O23 WDV 402 B 1 HETATM 25 F F14 WDV . . . F 3 143.156 24.218 79.568 1 41.93 ? F14 WDV 402 B 1 HETATM 26 F F15 WDV . . . F 3 142.181 25.833 80.802 1 37.69 ? F15 WDV 402 B 1 HETATM 27 F F16 WDV . . . F 3 141.109 24.587 79.345 1 40.08 ? F16 WDV 402 B 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #