data_4XVE # _model_server_result.job_id k9jcjwLWcCK42wFmDGs8yQ _model_server_result.datetime_utc '2024-10-19 11:47:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xve # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4XVE # _exptl.entry_id 4XVE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 436.57 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-pentyl-2-[(pyridin-2-ylmethyl)sulfanyl]-7-(pyrrolidin-1-ylcarbonyl)quinazolin-4(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XVE _cell.length_a 55.269 _cell.length_b 62.554 _cell.length_c 95.655 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XVE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H28 N4 O2 S' _chem_comp.formula_weight 436.57 _chem_comp.id WDS _chem_comp.mon_nstd_flag . _chem_comp.name 3-pentyl-2-[(pyridin-2-ylmethyl)sulfanyl]-7-(pyrrolidin-1-ylcarbonyl)quinazolin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 N25 WDS sing 456 n y C30 C31 WDS doub 457 n y N25 C20 WDS doub 458 n y C31 C29 WDS sing 459 n y C20 C16 WDS sing 460 n n C20 C24 WDS sing 461 n y C29 C24 WDS doub 462 n y C16 S13 WDS sing 463 n n S13 C10 WDS sing 464 n n N5 C10 WDS doub 465 n n N5 C2 WDS sing 466 n n C10 N7 WDS sing 467 n n O18 C14 WDS doub 468 n n C6 C2 WDS doub 469 n y C6 C11 WDS sing 470 n y C2 C1 WDS sing 471 n y C14 C11 WDS sing 472 n n C14 N17 WDS sing 473 n n N7 C12 WDS sing 474 n n N7 C3 WDS sing 475 n n C12 C15 WDS sing 476 n n C11 C9 WDS doub 477 n y C23 C19 WDS sing 478 n n C23 C28 WDS sing 479 n n C19 C15 WDS sing 480 n n C1 C3 WDS sing 481 n n C1 C4 WDS doub 482 n y C22 N17 WDS sing 483 n n C22 C27 WDS sing 484 n n N17 C21 WDS sing 485 n n C3 O8 WDS doub 486 n n C27 C26 WDS sing 487 n n C9 C4 WDS sing 488 n y C21 C26 WDS sing 489 n n C29 H1 WDS sing 490 n n C31 H2 WDS sing 491 n n C4 H3 WDS sing 492 n n C9 H4 WDS sing 493 n n C24 H5 WDS sing 494 n n C6 H6 WDS sing 495 n n C30 H7 WDS sing 496 n n C26 H8 WDS sing 497 n n C26 H9 WDS sing 498 n n C27 H10 WDS sing 499 n n C27 H11 WDS sing 500 n n C21 H12 WDS sing 501 n n C21 H13 WDS sing 502 n n C22 H14 WDS sing 503 n n C22 H15 WDS sing 504 n n C28 H16 WDS sing 505 n n C28 H17 WDS sing 506 n n C28 H18 WDS sing 507 n n C16 H19 WDS sing 508 n n C16 H20 WDS sing 509 n n C23 H21 WDS sing 510 n n C23 H22 WDS sing 511 n n C19 H23 WDS sing 512 n n C19 H24 WDS sing 513 n n C15 H25 WDS sing 514 n n C15 H26 WDS sing 515 n n C12 H27 WDS sing 516 n n C12 H28 WDS sing 517 n n # _atom_sites.entry_id 4XVE _atom_sites.fract_transf_matrix[1][1] 0.018093 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 401 1 NAP NAP . C 3 WDS A 1 402 1 WDS WDS . D 4 HOH A 1 501 135 HOH HOH . D 4 HOH A 2 502 80 HOH HOH . D 4 HOH A 3 503 146 HOH HOH . D 4 HOH A 4 504 109 HOH HOH . D 4 HOH A 5 505 53 HOH HOH . D 4 HOH A 6 506 175 HOH HOH . D 4 HOH A 7 507 126 HOH HOH . D 4 HOH A 8 508 30 HOH HOH . D 4 HOH A 9 509 38 HOH HOH . D 4 HOH A 10 510 26 HOH HOH . D 4 HOH A 11 511 27 HOH HOH . D 4 HOH A 12 512 152 HOH HOH . D 4 HOH A 13 513 25 HOH HOH . D 4 HOH A 14 514 115 HOH HOH . D 4 HOH A 15 515 55 HOH HOH . D 4 HOH A 16 516 61 HOH HOH . D 4 HOH A 17 517 85 HOH HOH . D 4 HOH A 18 518 67 HOH HOH . D 4 HOH A 19 519 63 HOH HOH . D 4 HOH A 20 520 101 HOH HOH . D 4 HOH A 21 521 158 HOH HOH . D 4 HOH A 22 522 108 HOH HOH . D 4 HOH A 23 523 84 HOH HOH . D 4 HOH A 24 524 39 HOH HOH . D 4 HOH A 25 525 92 HOH HOH . D 4 HOH A 26 526 81 HOH HOH . D 4 HOH A 27 527 42 HOH HOH . D 4 HOH A 28 528 188 HOH HOH . D 4 HOH A 29 529 46 HOH HOH . D 4 HOH A 30 530 149 HOH HOH . D 4 HOH A 31 531 31 HOH HOH . D 4 HOH A 32 532 5 HOH HOH . D 4 HOH A 33 533 44 HOH HOH . D 4 HOH A 34 534 113 HOH HOH . D 4 HOH A 35 535 182 HOH HOH . D 4 HOH A 36 536 179 HOH HOH . D 4 HOH A 37 537 165 HOH HOH . D 4 HOH A 38 538 163 HOH HOH . D 4 HOH A 39 539 78 HOH HOH . D 4 HOH A 40 540 132 HOH HOH . D 4 HOH A 41 541 33 HOH HOH . D 4 HOH A 42 542 62 HOH HOH . D 4 HOH A 43 543 73 HOH HOH . D 4 HOH A 44 544 164 HOH HOH . D 4 HOH A 45 545 72 HOH HOH . D 4 HOH A 46 546 91 HOH HOH . D 4 HOH A 47 547 176 HOH HOH . D 4 HOH A 48 548 45 HOH HOH . D 4 HOH A 49 549 71 HOH HOH . D 4 HOH A 50 550 83 HOH HOH . D 4 HOH A 51 551 183 HOH HOH . D 4 HOH A 52 552 185 HOH HOH . D 4 HOH A 53 553 68 HOH HOH . D 4 HOH A 54 554 120 HOH HOH . D 4 HOH A 55 555 171 HOH HOH . D 4 HOH A 56 556 195 HOH HOH . D 4 HOH A 57 557 104 HOH HOH . D 4 HOH A 58 558 70 HOH HOH . D 4 HOH A 59 559 1 HOH HOH . D 4 HOH A 60 560 193 HOH HOH . D 4 HOH A 61 561 119 HOH HOH . D 4 HOH A 62 562 169 HOH HOH . D 4 HOH A 63 563 196 HOH HOH . D 4 HOH A 64 564 197 HOH HOH . D 4 HOH A 65 565 148 HOH HOH . D 4 HOH A 66 566 133 HOH HOH . D 4 HOH A 67 567 121 HOH HOH . D 4 HOH A 68 568 57 HOH HOH . D 4 HOH A 69 569 170 HOH HOH . D 4 HOH A 70 570 138 HOH HOH . D 4 HOH A 71 571 159 HOH HOH . D 4 HOH A 72 572 123 HOH HOH . D 4 HOH A 73 573 198 HOH HOH . D 4 HOH A 74 574 181 HOH HOH . D 4 HOH A 75 575 200 HOH HOH . D 4 HOH A 76 576 161 HOH HOH . D 4 HOH A 77 577 184 HOH HOH . D 4 HOH A 78 578 190 HOH HOH . D 4 HOH A 79 579 2 HOH HOH . D 4 HOH A 80 580 3 HOH HOH . D 4 HOH A 81 581 6 HOH HOH . D 4 HOH A 82 582 7 HOH HOH . D 4 HOH A 83 583 8 HOH HOH . D 4 HOH A 84 584 9 HOH HOH . D 4 HOH A 85 585 10 HOH HOH . D 4 HOH A 86 586 11 HOH HOH . D 4 HOH A 87 587 12 HOH HOH . D 4 HOH A 88 588 13 HOH HOH . D 4 HOH A 89 589 14 HOH HOH . D 4 HOH A 90 590 15 HOH HOH . D 4 HOH A 91 591 16 HOH HOH . D 4 HOH A 92 592 17 HOH HOH . D 4 HOH A 93 593 18 HOH HOH . D 4 HOH A 94 594 19 HOH HOH . D 4 HOH A 95 595 20 HOH HOH . D 4 HOH A 96 596 21 HOH HOH . D 4 HOH A 97 597 22 HOH HOH . D 4 HOH A 98 598 23 HOH HOH . D 4 HOH A 99 599 24 HOH HOH . D 4 HOH A 100 600 28 HOH HOH . D 4 HOH A 101 601 29 HOH HOH . D 4 HOH A 102 602 32 HOH HOH . D 4 HOH A 103 603 34 HOH HOH . D 4 HOH A 104 604 35 HOH HOH . D 4 HOH A 105 605 36 HOH HOH . D 4 HOH A 106 606 37 HOH HOH . D 4 HOH A 107 607 40 HOH HOH . D 4 HOH A 108 608 41 HOH HOH . D 4 HOH A 109 609 43 HOH HOH . D 4 HOH A 110 610 47 HOH HOH . D 4 HOH A 111 611 48 HOH HOH . D 4 HOH A 112 612 49 HOH HOH . D 4 HOH A 113 613 50 HOH HOH . D 4 HOH A 114 614 51 HOH HOH . D 4 HOH A 115 615 52 HOH HOH . D 4 HOH A 116 616 54 HOH HOH . D 4 HOH A 117 617 56 HOH HOH . D 4 HOH A 118 618 58 HOH HOH . D 4 HOH A 119 619 59 HOH HOH . D 4 HOH A 120 620 60 HOH HOH . D 4 HOH A 121 621 64 HOH HOH . D 4 HOH A 122 622 65 HOH HOH . D 4 HOH A 123 623 66 HOH HOH . D 4 HOH A 124 624 69 HOH HOH . D 4 HOH A 125 625 74 HOH HOH . D 4 HOH A 126 626 75 HOH HOH . D 4 HOH A 127 627 76 HOH HOH . D 4 HOH A 128 628 77 HOH HOH . D 4 HOH A 129 629 79 HOH HOH . D 4 HOH A 130 630 82 HOH HOH . D 4 HOH A 131 631 86 HOH HOH . D 4 HOH A 132 632 87 HOH HOH . D 4 HOH A 133 633 88 HOH HOH . D 4 HOH A 134 634 89 HOH HOH . D 4 HOH A 135 635 90 HOH HOH . D 4 HOH A 136 636 93 HOH HOH . D 4 HOH A 137 637 94 HOH HOH . D 4 HOH A 138 638 95 HOH HOH . D 4 HOH A 139 639 96 HOH HOH . D 4 HOH A 140 640 97 HOH HOH . D 4 HOH A 141 641 98 HOH HOH . D 4 HOH A 142 642 99 HOH HOH . D 4 HOH A 143 643 100 HOH HOH . D 4 HOH A 144 644 102 HOH HOH . D 4 HOH A 145 645 103 HOH HOH . D 4 HOH A 146 646 105 HOH HOH . D 4 HOH A 147 647 106 HOH HOH . D 4 HOH A 148 648 107 HOH HOH . D 4 HOH A 149 649 110 HOH HOH . D 4 HOH A 150 650 111 HOH HOH . D 4 HOH A 151 651 112 HOH HOH . D 4 HOH A 152 652 114 HOH HOH . D 4 HOH A 153 653 116 HOH HOH . D 4 HOH A 154 654 117 HOH HOH . D 4 HOH A 155 655 118 HOH HOH . D 4 HOH A 156 656 122 HOH HOH . D 4 HOH A 157 657 124 HOH HOH . D 4 HOH A 158 658 125 HOH HOH . D 4 HOH A 159 659 127 HOH HOH . D 4 HOH A 160 660 128 HOH HOH . D 4 HOH A 161 661 129 HOH HOH . D 4 HOH A 162 662 130 HOH HOH . D 4 HOH A 163 663 131 HOH HOH . D 4 HOH A 164 664 134 HOH HOH . D 4 HOH A 165 665 136 HOH HOH . D 4 HOH A 166 666 137 HOH HOH . D 4 HOH A 167 667 139 HOH HOH . D 4 HOH A 168 668 140 HOH HOH . D 4 HOH A 169 669 141 HOH HOH . D 4 HOH A 170 670 142 HOH HOH . D 4 HOH A 171 671 143 HOH HOH . D 4 HOH A 172 672 144 HOH HOH . D 4 HOH A 173 673 145 HOH HOH . D 4 HOH A 174 674 147 HOH HOH . D 4 HOH A 175 675 150 HOH HOH . D 4 HOH A 176 676 151 HOH HOH . D 4 HOH A 177 677 153 HOH HOH . D 4 HOH A 178 678 154 HOH HOH . D 4 HOH A 179 679 155 HOH HOH . D 4 HOH A 180 680 157 HOH HOH . D 4 HOH A 181 681 160 HOH HOH . D 4 HOH A 182 682 166 HOH HOH . D 4 HOH A 183 683 167 HOH HOH . D 4 HOH A 184 684 168 HOH HOH . D 4 HOH A 185 685 172 HOH HOH . D 4 HOH A 186 686 173 HOH HOH . D 4 HOH A 187 687 174 HOH HOH . D 4 HOH A 188 688 177 HOH HOH . D 4 HOH A 189 689 178 HOH HOH . D 4 HOH A 190 690 180 HOH HOH . D 4 HOH A 191 691 186 HOH HOH . D 4 HOH A 192 692 187 HOH HOH . D 4 HOH A 193 693 189 HOH HOH . D 4 HOH A 194 694 191 HOH HOH . D 4 HOH A 195 695 192 HOH HOH . D 4 HOH A 196 696 194 HOH HOH . D 4 HOH A 197 697 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C29 WDS . . . C 3 -9.328 24.752 27.597 1 21.44 ? C29 WDS 402 A 1 HETATM 2 C C31 WDS . . . C 3 -8.509 23.725 27.134 1 23.29 ? C31 WDS 402 A 1 HETATM 3 C C4 WDS . . . C 3 -3.478 26.075 33.028 1 17.35 ? C4 WDS 402 A 1 HETATM 4 C C9 WDS . . . C 3 -2.918 24.851 32.745 1 19.2 ? C9 WDS 402 A 1 HETATM 5 C C24 WDS . . . C 3 -8.81 26.028 27.812 1 22.25 ? C24 WDS 402 A 1 HETATM 6 C C6 WDS . . . C 3 -4.093 24.86 30.596 1 18.06 ? C6 WDS 402 A 1 HETATM 7 C C30 WDS . . . C 3 -7.177 23.989 26.911 1 24.47 ? C30 WDS 402 A 1 HETATM 8 C C1 WDS . . . C 3 -4.341 26.72 32.119 1 18.11 ? C1 WDS 402 A 1 HETATM 9 C C11 WDS . . . C 3 -3.257 24.233 31.531 1 17.96 ? C11 WDS 402 A 1 HETATM 10 C C2 WDS . . . C 3 -4.613 26.111 30.895 1 18.12 ? C2 WDS 402 A 1 HETATM 11 C C20 WDS . . . C 3 -7.453 26.214 27.547 1 21.07 ? C20 WDS 402 A 1 HETATM 12 C C3 WDS . . . C 3 -4.997 28.068 32.398 1 22.27 ? C3 WDS 402 A 1 HETATM 13 C C10 WDS . . . C 3 -6 27.823 30.278 1 19.57 ? C10 WDS 402 A 1 HETATM 14 C C14 WDS . . . C 3 -2.799 22.871 31.316 1 16.46 ? C14 WDS 402 A 1 HETATM 15 C C26 WDS . . . C 3 -5.041 20.822 33.452 1 16.42 ? C26 WDS 402 A 1 HETATM 16 C C27 WDS . . . C 3 -4.299 19.801 32.645 1 16.89 ? C27 WDS 402 A 1 HETATM 17 C C21 WDS . . . C 3 -4.511 22.21 33.139 1 15.89 ? C21 WDS 402 A 1 HETATM 18 C C22 WDS . . . C 3 -3.091 20.541 32.153 1 18.06 ? C22 WDS 402 A 1 HETATM 19 C C28 WDS . . . C 3 -6.368 34.479 33.063 1 33.6 ? C28 WDS 402 A 1 HETATM 20 C C16 WDS . . . C 3 -6.694 27.534 27.651 1 18.37 ? C16 WDS 402 A 1 HETATM 21 C C23 WDS . . . C 3 -6.273 33.543 31.864 1 36.61 ? C23 WDS 402 A 1 HETATM 22 C C19 WDS . . . C 3 -6.95 32.18 32.039 1 35.66 ? C19 WDS 402 A 1 HETATM 23 C C15 WDS . . . C 3 -5.915 31.051 32.068 1 38.46 ? C15 WDS 402 A 1 HETATM 24 C C12 WDS . . . C 3 -6.532 29.808 31.496 1 31.43 ? C12 WDS 402 A 1 HETATM 25 N N25 WDS . . . C 3 -6.65 25.231 27.105 1 20.34 ? N25 WDS 402 A 1 HETATM 26 N N5 WDS . . . C 3 -5.489 26.668 29.979 1 17.78 ? N5 WDS 402 A 1 HETATM 27 N N7 WDS . . . C 3 -5.792 28.553 31.392 1 24.1 ? N7 WDS 402 A 1 HETATM 28 N N17 WDS . . . C 3 -3.401 21.977 32.232 1 16.1 ? N17 WDS 402 A 1 HETATM 29 O O8 WDS . . . C 3 -4.834 28.68 33.463 1 23.66 ? O8 WDS 402 A 1 HETATM 30 O O18 WDS . . . C 3 -2.095 22.433 30.42 1 16.38 ? O18 WDS 402 A 1 HETATM 31 S S13 WDS . . . C 3 -7.07 28.543 29.082 1 21.15 ? S13 WDS 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #