data_4XVO # _model_server_result.job_id cOstWbUZ55KZwjRPwrxhXA _model_server_result.datetime_utc '2024-11-05 00:55:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 4XVO # _exptl.entry_id 4XVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XVO _cell.length_a 92.39 _cell.length_b 160.047 _cell.length_c 209.912 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H 1 1 B,F,I 2 1 C,G,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 65 A VAL 101 1_555 A N MSE 66 A MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 66 A MSE 102 1_555 A N GLU 67 A GLU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C LYS 119 A LYS 155 1_555 A N MSE 120 A MSE 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 120 A MSE 156 1_555 A N PRO 121 A PRO 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 A C SER 123 A SER 159 1_555 A N MSE 124 A MSE 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 124 A MSE 160 1_555 A N GLY 125 A GLY 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C VAL 146 A VAL 182 1_555 A N MSE 147 A MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 147 A MSE 183 1_555 A N ASP 148 A ASP 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C ASP 211 A ASP 247 1_555 A N MSE 212 A MSE 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 212 A MSE 248 1_555 A N VAL 213 A VAL 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C VAL 65 B VAL 101 1_555 B N MSE 66 B MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C MSE 66 B MSE 102 1_555 B N GLU 67 B GLU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 B C LYS 119 B LYS 155 1_555 B N MSE 120 B MSE 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C MSE 120 B MSE 156 1_555 B N PRO 121 B PRO 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale15 B C SER 123 B SER 159 1_555 B N MSE 124 B MSE 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 B C MSE 124 B MSE 160 1_555 B N GLY 125 B GLY 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 B C VAL 146 B VAL 182 1_555 B N MSE 147 B MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C MSE 147 B MSE 183 1_555 B N ASP 148 B ASP 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 B C ASP 211 B ASP 247 1_555 B N MSE 212 B MSE 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale20 B C MSE 212 B MSE 248 1_555 B N VAL 213 B VAL 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 C C VAL 65 C VAL 101 1_555 C N MSE 66 C MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale22 C C MSE 66 C MSE 102 1_555 C N GLU 67 C GLU 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 C C LYS 119 C LYS 155 1_555 C N MSE 120 C MSE 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 C C MSE 120 C MSE 156 1_555 C N PRO 121 C PRO 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale25 C C SER 123 C SER 159 1_555 C N MSE 124 C MSE 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale26 C C MSE 124 C MSE 160 1_555 C N GLY 125 C GLY 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale27 C C VAL 146 C VAL 182 1_555 C N MSE 147 C MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale28 C C MSE 147 C MSE 183 1_555 C N ASP 148 C ASP 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale29 C C ASP 211 C ASP 247 1_555 C N MSE 212 C MSE 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale30 C C MSE 212 C MSE 248 1_555 C N VAL 213 C VAL 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 4XVO _atom_sites.fract_transf_matrix[1][1] 0.010824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 A 1 501 501 PO4 PO4 . E 2 PO4 A 1 502 504 PO4 PO4 . F 2 PO4 B 1 301 502 PO4 PO4 . G 2 PO4 C 1 301 503 PO4 PO4 . H 3 HOH A 1 601 142 HOH HOH . H 3 HOH A 2 602 27 HOH HOH . H 3 HOH A 3 603 13 HOH HOH . H 3 HOH A 4 604 82 HOH HOH . H 3 HOH A 5 605 62 HOH HOH . H 3 HOH A 6 606 73 HOH HOH . H 3 HOH A 7 607 50 HOH HOH . H 3 HOH A 8 608 42 HOH HOH . H 3 HOH A 9 609 143 HOH HOH . H 3 HOH A 10 610 152 HOH HOH . H 3 HOH A 11 611 145 HOH HOH . H 3 HOH A 12 612 115 HOH HOH . H 3 HOH A 13 613 139 HOH HOH . H 3 HOH A 14 614 4 HOH HOH . H 3 HOH A 15 615 5 HOH HOH . H 3 HOH A 16 616 7 HOH HOH . H 3 HOH A 17 617 9 HOH HOH . H 3 HOH A 18 618 16 HOH HOH . H 3 HOH A 19 619 19 HOH HOH . H 3 HOH A 20 620 24 HOH HOH . H 3 HOH A 21 621 26 HOH HOH . H 3 HOH A 22 622 28 HOH HOH . H 3 HOH A 23 623 40 HOH HOH . H 3 HOH A 24 624 49 HOH HOH . H 3 HOH A 25 625 53 HOH HOH . H 3 HOH A 26 626 55 HOH HOH . H 3 HOH A 27 627 58 HOH HOH . H 3 HOH A 28 628 60 HOH HOH . H 3 HOH A 29 629 68 HOH HOH . H 3 HOH A 30 630 69 HOH HOH . H 3 HOH A 31 631 76 HOH HOH . H 3 HOH A 32 632 80 HOH HOH . H 3 HOH A 33 633 85 HOH HOH . H 3 HOH A 34 634 90 HOH HOH . H 3 HOH A 35 635 94 HOH HOH . H 3 HOH A 36 636 97 HOH HOH . H 3 HOH A 37 637 99 HOH HOH . H 3 HOH A 38 638 113 HOH HOH . H 3 HOH A 39 639 116 HOH HOH . H 3 HOH A 40 640 117 HOH HOH . H 3 HOH A 41 641 121 HOH HOH . H 3 HOH A 42 642 122 HOH HOH . H 3 HOH A 43 643 123 HOH HOH . H 3 HOH A 44 644 128 HOH HOH . H 3 HOH A 45 645 130 HOH HOH . H 3 HOH A 46 646 131 HOH HOH . H 3 HOH A 47 647 135 HOH HOH . H 3 HOH A 48 648 146 HOH HOH . H 3 HOH A 49 649 147 HOH HOH . H 3 HOH A 50 650 153 HOH HOH . H 3 HOH A 51 651 156 HOH HOH . H 3 HOH A 52 652 168 HOH HOH . H 3 HOH A 53 653 169 HOH HOH . H 3 HOH A 54 654 170 HOH HOH . H 3 HOH A 55 655 171 HOH HOH . H 3 HOH A 56 656 172 HOH HOH . H 3 HOH A 57 657 173 HOH HOH . I 3 HOH B 1 401 112 HOH HOH . I 3 HOH B 2 402 165 HOH HOH . I 3 HOH B 3 403 44 HOH HOH . I 3 HOH B 4 404 132 HOH HOH . I 3 HOH B 5 405 46 HOH HOH . I 3 HOH B 6 406 87 HOH HOH . I 3 HOH B 7 407 57 HOH HOH . I 3 HOH B 8 408 108 HOH HOH . I 3 HOH B 9 409 41 HOH HOH . I 3 HOH B 10 410 103 HOH HOH . I 3 HOH B 11 411 91 HOH HOH . I 3 HOH B 12 412 2 HOH HOH . I 3 HOH B 13 413 6 HOH HOH . I 3 HOH B 14 414 10 HOH HOH . I 3 HOH B 15 415 14 HOH HOH . I 3 HOH B 16 416 15 HOH HOH . I 3 HOH B 17 417 17 HOH HOH . I 3 HOH B 18 418 18 HOH HOH . I 3 HOH B 19 419 20 HOH HOH . I 3 HOH B 20 420 31 HOH HOH . I 3 HOH B 21 421 36 HOH HOH . I 3 HOH B 22 422 37 HOH HOH . I 3 HOH B 23 423 38 HOH HOH . I 3 HOH B 24 424 43 HOH HOH . I 3 HOH B 25 425 45 HOH HOH . I 3 HOH B 26 426 47 HOH HOH . I 3 HOH B 27 427 52 HOH HOH . I 3 HOH B 28 428 61 HOH HOH . I 3 HOH B 29 429 63 HOH HOH . I 3 HOH B 30 430 65 HOH HOH . I 3 HOH B 31 431 66 HOH HOH . I 3 HOH B 32 432 72 HOH HOH . I 3 HOH B 33 433 75 HOH HOH . I 3 HOH B 34 434 77 HOH HOH . I 3 HOH B 35 435 79 HOH HOH . I 3 HOH B 36 436 84 HOH HOH . I 3 HOH B 37 437 93 HOH HOH . I 3 HOH B 38 438 95 HOH HOH . I 3 HOH B 39 439 98 HOH HOH . I 3 HOH B 40 440 105 HOH HOH . I 3 HOH B 41 441 107 HOH HOH . I 3 HOH B 42 442 109 HOH HOH . I 3 HOH B 43 443 110 HOH HOH . I 3 HOH B 44 444 111 HOH HOH . I 3 HOH B 45 445 120 HOH HOH . I 3 HOH B 46 446 124 HOH HOH . I 3 HOH B 47 447 125 HOH HOH . I 3 HOH B 48 448 127 HOH HOH . I 3 HOH B 49 449 129 HOH HOH . I 3 HOH B 50 450 133 HOH HOH . I 3 HOH B 51 451 134 HOH HOH . I 3 HOH B 52 452 149 HOH HOH . I 3 HOH B 53 453 150 HOH HOH . I 3 HOH B 54 454 154 HOH HOH . I 3 HOH B 55 455 155 HOH HOH . I 3 HOH B 56 456 157 HOH HOH . I 3 HOH B 57 457 158 HOH HOH . I 3 HOH B 58 458 159 HOH HOH . I 3 HOH B 59 459 160 HOH HOH . I 3 HOH B 60 460 161 HOH HOH . I 3 HOH B 61 461 166 HOH HOH . J 3 HOH C 1 401 141 HOH HOH . J 3 HOH C 2 402 33 HOH HOH . J 3 HOH C 3 403 167 HOH HOH . J 3 HOH C 4 404 126 HOH HOH . J 3 HOH C 5 405 119 HOH HOH . J 3 HOH C 6 406 64 HOH HOH . J 3 HOH C 7 407 54 HOH HOH . J 3 HOH C 8 408 114 HOH HOH . J 3 HOH C 9 409 104 HOH HOH . J 3 HOH C 10 410 140 HOH HOH . J 3 HOH C 11 411 89 HOH HOH . J 3 HOH C 12 412 144 HOH HOH . J 3 HOH C 13 413 92 HOH HOH . J 3 HOH C 14 414 1 HOH HOH . J 3 HOH C 15 415 3 HOH HOH . J 3 HOH C 16 416 8 HOH HOH . J 3 HOH C 17 417 11 HOH HOH . J 3 HOH C 18 418 12 HOH HOH . J 3 HOH C 19 419 21 HOH HOH . J 3 HOH C 20 420 22 HOH HOH . J 3 HOH C 21 421 23 HOH HOH . J 3 HOH C 22 422 25 HOH HOH . J 3 HOH C 23 423 29 HOH HOH . J 3 HOH C 24 424 30 HOH HOH . J 3 HOH C 25 425 32 HOH HOH . J 3 HOH C 26 426 34 HOH HOH . J 3 HOH C 27 427 35 HOH HOH . J 3 HOH C 28 428 39 HOH HOH . J 3 HOH C 29 429 48 HOH HOH . J 3 HOH C 30 430 51 HOH HOH . J 3 HOH C 31 431 56 HOH HOH . J 3 HOH C 32 432 59 HOH HOH . J 3 HOH C 33 433 67 HOH HOH . J 3 HOH C 34 434 70 HOH HOH . J 3 HOH C 35 435 71 HOH HOH . J 3 HOH C 36 436 74 HOH HOH . J 3 HOH C 37 437 78 HOH HOH . J 3 HOH C 38 438 81 HOH HOH . J 3 HOH C 39 439 83 HOH HOH . J 3 HOH C 40 440 86 HOH HOH . J 3 HOH C 41 441 88 HOH HOH . J 3 HOH C 42 442 96 HOH HOH . J 3 HOH C 43 443 100 HOH HOH . J 3 HOH C 44 444 101 HOH HOH . J 3 HOH C 45 445 102 HOH HOH . J 3 HOH C 46 446 106 HOH HOH . J 3 HOH C 47 447 118 HOH HOH . J 3 HOH C 48 448 136 HOH HOH . J 3 HOH C 49 449 137 HOH HOH . J 3 HOH C 50 450 138 HOH HOH . J 3 HOH C 51 451 148 HOH HOH . J 3 HOH C 52 452 151 HOH HOH . J 3 HOH C 53 453 162 HOH HOH . J 3 HOH C 54 454 163 HOH HOH . J 3 HOH C 55 455 164 HOH HOH . J 3 HOH C 56 456 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 2 61.135 3.092 37.617 0.98 71.33 ? P PO4 301 B 1 HETATM 2 O O1 PO4 . . . F 2 60.419 2.891 36.304 0.98 88.17 ? O1 PO4 301 B 1 HETATM 3 O O2 PO4 . . . F 2 62.111 4.236 37.507 0.98 77.96 ? O2 PO4 301 B 1 HETATM 4 O O3 PO4 . . . F 2 61.902 1.844 37.972 0.98 51.72 ? O3 PO4 301 B 1 HETATM 5 O O4 PO4 . . . F 2 60.111 3.399 38.678 0.98 62.41 ? O4 PO4 301 B 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #