data_4XVQ
#
_model_server_result.job_id            aNZnSADKYDsmUtPbZrDFRQ 
_model_server_result.datetime_utc      '2024-12-21 18:28:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xvq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    4XVQ 
#
_exptl.entry_id    4XVQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4XVQ 
_cell.length_a            39.046 
_cell.length_b            39.046 
_cell.length_c            158.737 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XVQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc2 A O ASN 26 A ASN 26 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc3 A OG1 THR 35 A THR 35 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc4 A OD2 ASP 107 A ASP 107 1_555 D MG MG . A MG 203 1_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc5 B MG MG . A MG 201 1_555 C O1G GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc6 B MG MG . A MG 201 1_555 C O1B GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
metalc ? metalc7 B MG MG . A MG 201 1_555 F O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc8 B MG MG . A MG 201 1_555 F O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc9 D MG MG . A MG 203 1_555 F O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc10 D MG MG . A MG 203 1_555 F O HOH . A HOH 348 1_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 180 n n 
C1 C2 GOL sing 181 n n 
C1 H11 GOL sing 182 n n 
C1 H12 GOL sing 183 n n 
O1 HO1 GOL sing 184 n n 
C2 O2 GOL sing 185 n n 
C2 C3 GOL sing 186 n n 
C2 H2 GOL sing 187 n n 
O2 HO2 GOL sing 188 n n 
C3 O3 GOL sing 189 n n 
C3 H31 GOL sing 190 n n 
C3 H32 GOL sing 191 n n 
O3 HO3 GOL sing 192 n n 
#
_atom_sites.entry_id                     4XVQ 
_atom_sites.fract_transf_matrix[1][1]    0.025611 
_atom_sites.fract_transf_matrix[1][2]    0.014786 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.029573 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0063 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 201 529 MG MG . 
C 3 GNP A 1 202 528 GNP GNP . 
D 2 MG A 1 203 530 MG MG . 
E 4 GOL A 1 204 1000 GOL GOL . 
F 5 HOH A 1 301 274 HOH HOH . 
F 5 HOH A 2 302 268 HOH HOH . 
F 5 HOH A 3 303 267 HOH HOH . 
F 5 HOH A 4 304 297 HOH HOH . 
F 5 HOH A 5 305 296 HOH HOH . 
F 5 HOH A 6 306 215 HOH HOH . 
F 5 HOH A 7 307 273 HOH HOH . 
F 5 HOH A 8 308 295 HOH HOH . 
F 5 HOH A 9 309 230 HOH HOH . 
F 5 HOH A 10 310 208 HOH HOH . 
F 5 HOH A 11 311 243 HOH HOH . 
F 5 HOH A 12 312 242 HOH HOH . 
F 5 HOH A 13 313 218 HOH HOH . 
F 5 HOH A 14 314 272 HOH HOH . 
F 5 HOH A 15 315 217 HOH HOH . 
F 5 HOH A 16 316 203 HOH HOH . 
F 5 HOH A 17 317 261 HOH HOH . 
F 5 HOH A 18 318 288 HOH HOH . 
F 5 HOH A 19 319 216 HOH HOH . 
F 5 HOH A 20 320 231 HOH HOH . 
F 5 HOH A 21 321 282 HOH HOH . 
F 5 HOH A 22 322 223 HOH HOH . 
F 5 HOH A 23 323 255 HOH HOH . 
F 5 HOH A 24 324 269 HOH HOH . 
F 5 HOH A 25 325 271 HOH HOH . 
F 5 HOH A 26 326 290 HOH HOH . 
F 5 HOH A 27 327 275 HOH HOH . 
F 5 HOH A 28 328 228 HOH HOH . 
F 5 HOH A 29 329 276 HOH HOH . 
F 5 HOH A 30 330 233 HOH HOH . 
F 5 HOH A 31 331 249 HOH HOH . 
F 5 HOH A 32 332 248 HOH HOH . 
F 5 HOH A 33 333 285 HOH HOH . 
F 5 HOH A 34 334 240 HOH HOH . 
F 5 HOH A 35 335 219 HOH HOH . 
F 5 HOH A 36 336 222 HOH HOH . 
F 5 HOH A 37 337 254 HOH HOH . 
F 5 HOH A 38 338 239 HOH HOH . 
F 5 HOH A 39 339 245 HOH HOH . 
F 5 HOH A 40 340 236 HOH HOH . 
F 5 HOH A 41 341 281 HOH HOH . 
F 5 HOH A 42 342 232 HOH HOH . 
F 5 HOH A 43 343 253 HOH HOH . 
F 5 HOH A 44 344 241 HOH HOH . 
F 5 HOH A 45 345 247 HOH HOH . 
F 5 HOH A 46 346 214 HOH HOH . 
F 5 HOH A 47 347 246 HOH HOH . 
F 5 HOH A 48 348 252 HOH HOH . 
F 5 HOH A 49 349 286 HOH HOH . 
F 5 HOH A 50 350 201 HOH HOH . 
F 5 HOH A 51 351 202 HOH HOH . 
F 5 HOH A 52 352 204 HOH HOH . 
F 5 HOH A 53 353 205 HOH HOH . 
F 5 HOH A 54 354 207 HOH HOH . 
F 5 HOH A 55 355 209 HOH HOH . 
F 5 HOH A 56 356 210 HOH HOH . 
F 5 HOH A 57 357 211 HOH HOH . 
F 5 HOH A 58 358 213 HOH HOH . 
F 5 HOH A 59 359 220 HOH HOH . 
F 5 HOH A 60 360 221 HOH HOH . 
F 5 HOH A 61 361 224 HOH HOH . 
F 5 HOH A 62 362 226 HOH HOH . 
F 5 HOH A 63 363 227 HOH HOH . 
F 5 HOH A 64 364 229 HOH HOH . 
F 5 HOH A 65 365 234 HOH HOH . 
F 5 HOH A 66 366 235 HOH HOH . 
F 5 HOH A 67 367 237 HOH HOH . 
F 5 HOH A 68 368 244 HOH HOH . 
F 5 HOH A 69 369 251 HOH HOH . 
F 5 HOH A 70 370 256 HOH HOH . 
F 5 HOH A 71 371 257 HOH HOH . 
F 5 HOH A 72 372 260 HOH HOH . 
F 5 HOH A 73 373 262 HOH HOH . 
F 5 HOH A 74 374 263 HOH HOH . 
F 5 HOH A 75 375 264 HOH HOH . 
F 5 HOH A 76 376 265 HOH HOH . 
F 5 HOH A 77 377 266 HOH HOH . 
F 5 HOH A 78 378 277 HOH HOH . 
F 5 HOH A 79 379 280 HOH HOH . 
F 5 HOH A 80 380 283 HOH HOH . 
F 5 HOH A 81 381 292 HOH HOH . 
F 5 HOH A 82 382 294 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 -12.209 12.797 16.708 1 41 ? C1 GOL 204 A 1 
HETATM 2 O O1 GOL . . . E 4 -12.58 13.042 15.367 1 36.55 ? O1 GOL 204 A 1 
HETATM 3 C C2 GOL . . . E 4 -11.497 11.454 16.797 1 27.46 ? C2 GOL 204 A 1 
HETATM 4 O O2 GOL . . . E 4 -10.83 11.222 15.593 1 38.63 ? O2 GOL 204 A 1 
HETATM 5 C C3 GOL . . . E 4 -10.422 11.475 17.882 1 39.91 ? C3 GOL 204 A 1 
HETATM 6 O O3 GOL . . . E 4 -10.923 11.025 19.121 1 42.61 ? O3 GOL 204 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#