data_4XVQ # _model_server_result.job_id jQKSyiW5iE-jvRdh_TA6Hw _model_server_result.datetime_utc '2024-12-03 21:59:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 4XVQ # _exptl.entry_id 4XVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XVQ _cell.length_a 39.046 _cell.length_b 39.046 _cell.length_c 158.737 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc2 A O ASN 26 A ASN 26 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc3 A OG1 THR 35 A THR 35 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc4 A OD2 ASP 107 A ASP 107 1_555 D MG MG . A MG 203 1_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc5 B MG MG . A MG 201 1_555 C O1G GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc6 B MG MG . A MG 201 1_555 C O1B GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc7 B MG MG . A MG 201 1_555 F O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc8 B MG MG . A MG 201 1_555 F O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc9 D MG MG . A MG 203 1_555 F O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc10 D MG MG . A MG 203 1_555 F O HOH . A HOH 348 1_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 180 n n C1 C2 GOL sing 181 n n C1 H11 GOL sing 182 n n C1 H12 GOL sing 183 n n O1 HO1 GOL sing 184 n n C2 O2 GOL sing 185 n n C2 C3 GOL sing 186 n n C2 H2 GOL sing 187 n n O2 HO2 GOL sing 188 n n C3 O3 GOL sing 189 n n C3 H31 GOL sing 190 n n C3 H32 GOL sing 191 n n O3 HO3 GOL sing 192 n n # _atom_sites.entry_id 4XVQ _atom_sites.fract_transf_matrix[1][1] 0.025611 _atom_sites.fract_transf_matrix[1][2] 0.014786 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 529 MG MG . C 3 GNP A 1 202 528 GNP GNP . D 2 MG A 1 203 530 MG MG . E 4 GOL A 1 204 1000 GOL GOL . F 5 HOH A 1 301 274 HOH HOH . F 5 HOH A 2 302 268 HOH HOH . F 5 HOH A 3 303 267 HOH HOH . F 5 HOH A 4 304 297 HOH HOH . F 5 HOH A 5 305 296 HOH HOH . F 5 HOH A 6 306 215 HOH HOH . F 5 HOH A 7 307 273 HOH HOH . F 5 HOH A 8 308 295 HOH HOH . F 5 HOH A 9 309 230 HOH HOH . F 5 HOH A 10 310 208 HOH HOH . F 5 HOH A 11 311 243 HOH HOH . F 5 HOH A 12 312 242 HOH HOH . F 5 HOH A 13 313 218 HOH HOH . F 5 HOH A 14 314 272 HOH HOH . F 5 HOH A 15 315 217 HOH HOH . F 5 HOH A 16 316 203 HOH HOH . F 5 HOH A 17 317 261 HOH HOH . F 5 HOH A 18 318 288 HOH HOH . F 5 HOH A 19 319 216 HOH HOH . F 5 HOH A 20 320 231 HOH HOH . F 5 HOH A 21 321 282 HOH HOH . F 5 HOH A 22 322 223 HOH HOH . F 5 HOH A 23 323 255 HOH HOH . F 5 HOH A 24 324 269 HOH HOH . F 5 HOH A 25 325 271 HOH HOH . F 5 HOH A 26 326 290 HOH HOH . F 5 HOH A 27 327 275 HOH HOH . F 5 HOH A 28 328 228 HOH HOH . F 5 HOH A 29 329 276 HOH HOH . F 5 HOH A 30 330 233 HOH HOH . F 5 HOH A 31 331 249 HOH HOH . F 5 HOH A 32 332 248 HOH HOH . F 5 HOH A 33 333 285 HOH HOH . F 5 HOH A 34 334 240 HOH HOH . F 5 HOH A 35 335 219 HOH HOH . F 5 HOH A 36 336 222 HOH HOH . F 5 HOH A 37 337 254 HOH HOH . F 5 HOH A 38 338 239 HOH HOH . F 5 HOH A 39 339 245 HOH HOH . F 5 HOH A 40 340 236 HOH HOH . F 5 HOH A 41 341 281 HOH HOH . F 5 HOH A 42 342 232 HOH HOH . F 5 HOH A 43 343 253 HOH HOH . F 5 HOH A 44 344 241 HOH HOH . F 5 HOH A 45 345 247 HOH HOH . F 5 HOH A 46 346 214 HOH HOH . F 5 HOH A 47 347 246 HOH HOH . F 5 HOH A 48 348 252 HOH HOH . F 5 HOH A 49 349 286 HOH HOH . F 5 HOH A 50 350 201 HOH HOH . F 5 HOH A 51 351 202 HOH HOH . F 5 HOH A 52 352 204 HOH HOH . F 5 HOH A 53 353 205 HOH HOH . F 5 HOH A 54 354 207 HOH HOH . F 5 HOH A 55 355 209 HOH HOH . F 5 HOH A 56 356 210 HOH HOH . F 5 HOH A 57 357 211 HOH HOH . F 5 HOH A 58 358 213 HOH HOH . F 5 HOH A 59 359 220 HOH HOH . F 5 HOH A 60 360 221 HOH HOH . F 5 HOH A 61 361 224 HOH HOH . F 5 HOH A 62 362 226 HOH HOH . F 5 HOH A 63 363 227 HOH HOH . F 5 HOH A 64 364 229 HOH HOH . F 5 HOH A 65 365 234 HOH HOH . F 5 HOH A 66 366 235 HOH HOH . F 5 HOH A 67 367 237 HOH HOH . F 5 HOH A 68 368 244 HOH HOH . F 5 HOH A 69 369 251 HOH HOH . F 5 HOH A 70 370 256 HOH HOH . F 5 HOH A 71 371 257 HOH HOH . F 5 HOH A 72 372 260 HOH HOH . F 5 HOH A 73 373 262 HOH HOH . F 5 HOH A 74 374 263 HOH HOH . F 5 HOH A 75 375 264 HOH HOH . F 5 HOH A 76 376 265 HOH HOH . F 5 HOH A 77 377 266 HOH HOH . F 5 HOH A 78 378 277 HOH HOH . F 5 HOH A 79 379 280 HOH HOH . F 5 HOH A 80 380 283 HOH HOH . F 5 HOH A 81 381 292 HOH HOH . F 5 HOH A 82 382 294 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -12.209 12.797 16.708 1 41 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . E 4 -12.58 13.042 15.367 1 36.55 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . E 4 -11.497 11.454 16.797 1 27.46 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . E 4 -10.83 11.222 15.593 1 38.63 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . E 4 -10.422 11.475 17.882 1 39.91 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . E 4 -10.923 11.025 19.121 1 42.61 ? O3 GOL 204 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #