data_4XWX # _model_server_result.job_id VRX184Vqciyh01LQ9jZRoQ _model_server_result.datetime_utc '2024-12-26 14:42:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xwx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 4XWX # _exptl.entry_id 4XWX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XWX _cell.length_a 64.91 _cell.length_b 126.79 _cell.length_c 50.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XWX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 12 A MET 46 1_555 H NA NA . A NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 A O MET 12 A MET 46 1_555 H NA NA . A NA 307 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc3 H NA NA . A NA 307 1_555 I O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc4 H NA NA . A NA 307 1_555 I O HOH . A HOH 417 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc5 H NA NA . A NA 307 1_555 I O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc6 H NA NA . A NA 307 1_555 I O HOH . A HOH 444 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4XWX _atom_sites.fract_transf_matrix[1][1] 0.015406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 1 EDO EDO . C 2 EDO A 1 302 2 EDO EDO . D 2 EDO A 1 303 3 EDO EDO . E 2 EDO A 1 304 5 EDO EDO . F 2 EDO A 1 305 6 EDO EDO . G 2 EDO A 1 306 7 EDO EDO . H 3 NA A 1 307 1 NA NA . I 4 HOH A 1 401 117 HOH HOH . I 4 HOH A 2 402 22 HOH HOH . I 4 HOH A 3 403 33 HOH HOH . I 4 HOH A 4 404 61 HOH HOH . I 4 HOH A 5 405 105 HOH HOH . I 4 HOH A 6 406 13 HOH HOH . I 4 HOH A 7 407 72 HOH HOH . I 4 HOH A 8 408 114 HOH HOH . I 4 HOH A 9 409 21 HOH HOH . I 4 HOH A 10 410 19 HOH HOH . I 4 HOH A 11 411 43 HOH HOH . I 4 HOH A 12 412 64 HOH HOH . I 4 HOH A 13 413 12 HOH HOH . I 4 HOH A 14 414 39 HOH HOH . I 4 HOH A 15 415 73 HOH HOH . I 4 HOH A 16 416 69 HOH HOH . I 4 HOH A 17 417 74 HOH HOH . I 4 HOH A 18 418 67 HOH HOH . I 4 HOH A 19 419 109 HOH HOH . I 4 HOH A 20 420 101 HOH HOH . I 4 HOH A 21 421 11 HOH HOH . I 4 HOH A 22 422 34 HOH HOH . I 4 HOH A 23 423 27 HOH HOH . I 4 HOH A 24 424 17 HOH HOH . I 4 HOH A 25 425 7 HOH HOH . I 4 HOH A 26 426 23 HOH HOH . I 4 HOH A 27 427 25 HOH HOH . I 4 HOH A 28 428 1 HOH HOH . I 4 HOH A 29 429 62 HOH HOH . I 4 HOH A 30 430 8 HOH HOH . I 4 HOH A 31 431 18 HOH HOH . I 4 HOH A 32 432 71 HOH HOH . I 4 HOH A 33 433 120 HOH HOH . I 4 HOH A 34 434 28 HOH HOH . I 4 HOH A 35 435 112 HOH HOH . I 4 HOH A 36 436 29 HOH HOH . I 4 HOH A 37 437 2 HOH HOH . I 4 HOH A 38 438 65 HOH HOH . I 4 HOH A 39 439 63 HOH HOH . I 4 HOH A 40 440 106 HOH HOH . I 4 HOH A 41 441 95 HOH HOH . I 4 HOH A 42 442 94 HOH HOH . I 4 HOH A 43 443 116 HOH HOH . I 4 HOH A 44 444 108 HOH HOH . I 4 HOH A 45 445 107 HOH HOH . I 4 HOH A 46 446 115 HOH HOH . I 4 HOH A 47 447 36 HOH HOH . I 4 HOH A 48 448 35 HOH HOH . I 4 HOH A 49 449 93 HOH HOH . I 4 HOH A 50 450 4 HOH HOH . I 4 HOH A 51 451 6 HOH HOH . I 4 HOH A 52 452 9 HOH HOH . I 4 HOH A 53 453 10 HOH HOH . I 4 HOH A 54 454 16 HOH HOH . I 4 HOH A 55 455 20 HOH HOH . I 4 HOH A 56 456 24 HOH HOH . I 4 HOH A 57 457 26 HOH HOH . I 4 HOH A 58 458 30 HOH HOH . I 4 HOH A 59 459 31 HOH HOH . I 4 HOH A 60 460 32 HOH HOH . I 4 HOH A 61 461 38 HOH HOH . I 4 HOH A 62 462 40 HOH HOH . I 4 HOH A 63 463 41 HOH HOH . I 4 HOH A 64 464 42 HOH HOH . I 4 HOH A 65 465 45 HOH HOH . I 4 HOH A 66 466 46 HOH HOH . I 4 HOH A 67 467 48 HOH HOH . I 4 HOH A 68 468 49 HOH HOH . I 4 HOH A 69 469 51 HOH HOH . I 4 HOH A 70 470 52 HOH HOH . I 4 HOH A 71 471 53 HOH HOH . I 4 HOH A 72 472 58 HOH HOH . I 4 HOH A 73 473 59 HOH HOH . I 4 HOH A 74 474 66 HOH HOH . I 4 HOH A 75 475 68 HOH HOH . I 4 HOH A 76 476 75 HOH HOH . I 4 HOH A 77 477 76 HOH HOH . I 4 HOH A 78 478 77 HOH HOH . I 4 HOH A 79 479 78 HOH HOH . I 4 HOH A 80 480 79 HOH HOH . I 4 HOH A 81 481 80 HOH HOH . I 4 HOH A 82 482 81 HOH HOH . I 4 HOH A 83 483 82 HOH HOH . I 4 HOH A 84 484 83 HOH HOH . I 4 HOH A 85 485 84 HOH HOH . I 4 HOH A 86 486 85 HOH HOH . I 4 HOH A 87 487 87 HOH HOH . I 4 HOH A 88 488 88 HOH HOH . I 4 HOH A 89 489 89 HOH HOH . I 4 HOH A 90 490 90 HOH HOH . I 4 HOH A 91 491 96 HOH HOH . I 4 HOH A 92 492 97 HOH HOH . I 4 HOH A 93 493 98 HOH HOH . I 4 HOH A 94 494 99 HOH HOH . I 4 HOH A 95 495 103 HOH HOH . I 4 HOH A 96 496 104 HOH HOH . I 4 HOH A 97 497 110 HOH HOH . I 4 HOH A 98 498 111 HOH HOH . I 4 HOH A 99 499 113 HOH HOH . I 4 HOH A 100 500 118 HOH HOH . I 4 HOH A 101 501 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 19.633 15.858 11.542 1 80.33 ? C1 EDO 304 A 1 HETATM 2 O O1 EDO . . . E 2 20.797 16.221 12.299 1 80.95 ? O1 EDO 304 A 1 HETATM 3 C C2 EDO . . . E 2 18.8 17.102 11.255 1 77.49 ? C2 EDO 304 A 1 HETATM 4 O O2 EDO . . . E 2 19.578 18.036 10.497 1 75.06 ? O2 EDO 304 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 4 #