data_4XX4 # _model_server_result.job_id alw-o7tRxfwkSdWjLLvHOg _model_server_result.datetime_utc '2024-12-26 20:56:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4XX4 # _exptl.entry_id 4XX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XX4 _cell.length_a 142.41 _cell.length_b 142.41 _cell.length_c 142.41 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 PISA trimeric 3 software_defined_assembly 4 PISA trimeric 3 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 A,B,C,D,E,F,G 3 1,2,3 A,C,D,F 4 1,2,3 B,E,G 5 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 117 1_555 A SG CYS 58 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 217 A CYS 283 1_555 A SG CYS 221 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 259 A CYS 325 1_555 A SG CYS 296 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 51 B CYS 117 1_555 B SG CYS 58 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 B SG CYS 217 B CYS 283 1_555 B SG CYS 221 B CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 B SG CYS 259 B CYS 325 1_555 B SG CYS 296 B CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 75 A ASN 141 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 301 n n C1 O1 NAG sing 302 n n C1 O5 NAG sing 303 n n C1 H1 NAG sing 304 n n C2 C3 NAG sing 305 n n C2 N2 NAG sing 306 n n C2 H2 NAG sing 307 n n C3 C4 NAG sing 308 n n C3 O3 NAG sing 309 n n C3 H3 NAG sing 310 n n C4 C5 NAG sing 311 n n C4 O4 NAG sing 312 n n C4 H4 NAG sing 313 n n C5 C6 NAG sing 314 n n C5 O5 NAG sing 315 n n C5 H5 NAG sing 316 n n C6 O6 NAG sing 317 n n C6 H61 NAG sing 318 n n C6 H62 NAG sing 319 n n C7 C8 NAG sing 320 n n C7 N2 NAG sing 321 n n C7 O7 NAG doub 322 n n C8 H81 NAG sing 323 n n C8 H82 NAG sing 324 n n C8 H83 NAG sing 325 n n N2 HN2 NAG sing 326 n n O1 HO1 NAG sing 327 n n O3 HO3 NAG sing 328 n n O4 HO4 NAG sing 329 n n O6 HO6 NAG sing 330 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4XX4 _atom_sites.fract_transf_matrix[1][1] 0.007022 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 501 447 NAG NAG . D 3 70Y A 1 502 1 70Y 708 . E 3 70Y B 1 501 2 70Y 708 . F 4 HOH A 1 601 7 HOH HOH . F 4 HOH A 2 602 68 HOH HOH . F 4 HOH A 3 603 209 HOH HOH . F 4 HOH A 4 604 41 HOH HOH . F 4 HOH A 5 605 134 HOH HOH . F 4 HOH A 6 606 173 HOH HOH . F 4 HOH A 7 607 207 HOH HOH . F 4 HOH A 8 608 78 HOH HOH . F 4 HOH A 9 609 219 HOH HOH . F 4 HOH A 10 610 303 HOH HOH . F 4 HOH A 11 611 17 HOH HOH . F 4 HOH A 12 612 163 HOH HOH . F 4 HOH A 13 613 273 HOH HOH . F 4 HOH A 14 614 220 HOH HOH . F 4 HOH A 15 615 265 HOH HOH . F 4 HOH A 16 616 175 HOH HOH . F 4 HOH A 17 617 12 HOH HOH . F 4 HOH A 18 618 193 HOH HOH . F 4 HOH A 19 619 2 HOH HOH . F 4 HOH A 20 620 3 HOH HOH . F 4 HOH A 21 621 4 HOH HOH . F 4 HOH A 22 622 6 HOH HOH . F 4 HOH A 23 623 10 HOH HOH . F 4 HOH A 24 624 13 HOH HOH . F 4 HOH A 25 625 19 HOH HOH . F 4 HOH A 26 626 21 HOH HOH . F 4 HOH A 27 627 28 HOH HOH . F 4 HOH A 28 628 33 HOH HOH . F 4 HOH A 29 629 34 HOH HOH . F 4 HOH A 30 630 35 HOH HOH . F 4 HOH A 31 631 36 HOH HOH . F 4 HOH A 32 632 37 HOH HOH . F 4 HOH A 33 633 40 HOH HOH . F 4 HOH A 34 634 42 HOH HOH . F 4 HOH A 35 635 43 HOH HOH . F 4 HOH A 36 636 47 HOH HOH . F 4 HOH A 37 637 49 HOH HOH . F 4 HOH A 38 638 50 HOH HOH . F 4 HOH A 39 639 51 HOH HOH . F 4 HOH A 40 640 52 HOH HOH . F 4 HOH A 41 641 53 HOH HOH . F 4 HOH A 42 642 56 HOH HOH . F 4 HOH A 43 643 57 HOH HOH . F 4 HOH A 44 644 64 HOH HOH . F 4 HOH A 45 645 65 HOH HOH . F 4 HOH A 46 646 66 HOH HOH . F 4 HOH A 47 647 69 HOH HOH . F 4 HOH A 48 648 70 HOH HOH . F 4 HOH A 49 649 72 HOH HOH . F 4 HOH A 50 650 75 HOH HOH . F 4 HOH A 51 651 79 HOH HOH . F 4 HOH A 52 652 80 HOH HOH . F 4 HOH A 53 653 83 HOH HOH . F 4 HOH A 54 654 84 HOH HOH . F 4 HOH A 55 655 87 HOH HOH . F 4 HOH A 56 656 88 HOH HOH . F 4 HOH A 57 657 89 HOH HOH . F 4 HOH A 58 658 90 HOH HOH . F 4 HOH A 59 659 94 HOH HOH . F 4 HOH A 60 660 95 HOH HOH . F 4 HOH A 61 661 99 HOH HOH . F 4 HOH A 62 662 101 HOH HOH . F 4 HOH A 63 663 102 HOH HOH . F 4 HOH A 64 664 105 HOH HOH . F 4 HOH A 65 665 106 HOH HOH . F 4 HOH A 66 666 108 HOH HOH . F 4 HOH A 67 667 109 HOH HOH . F 4 HOH A 68 668 112 HOH HOH . F 4 HOH A 69 669 115 HOH HOH . F 4 HOH A 70 670 117 HOH HOH . F 4 HOH A 71 671 118 HOH HOH . F 4 HOH A 72 672 122 HOH HOH . F 4 HOH A 73 673 124 HOH HOH . F 4 HOH A 74 674 126 HOH HOH . F 4 HOH A 75 675 128 HOH HOH . F 4 HOH A 76 676 135 HOH HOH . F 4 HOH A 77 677 136 HOH HOH . F 4 HOH A 78 678 137 HOH HOH . F 4 HOH A 79 679 138 HOH HOH . F 4 HOH A 80 680 156 HOH HOH . F 4 HOH A 81 681 159 HOH HOH . F 4 HOH A 82 682 166 HOH HOH . F 4 HOH A 83 683 172 HOH HOH . F 4 HOH A 84 684 174 HOH HOH . F 4 HOH A 85 685 179 HOH HOH . F 4 HOH A 86 686 184 HOH HOH . F 4 HOH A 87 687 186 HOH HOH . F 4 HOH A 88 688 192 HOH HOH . F 4 HOH A 89 689 194 HOH HOH . F 4 HOH A 90 690 195 HOH HOH . F 4 HOH A 91 691 196 HOH HOH . F 4 HOH A 92 692 200 HOH HOH . F 4 HOH A 93 693 201 HOH HOH . F 4 HOH A 94 694 205 HOH HOH . F 4 HOH A 95 695 214 HOH HOH . F 4 HOH A 96 696 218 HOH HOH . F 4 HOH A 97 697 225 HOH HOH . F 4 HOH A 98 698 231 HOH HOH . F 4 HOH A 99 699 236 HOH HOH . F 4 HOH A 100 700 238 HOH HOH . F 4 HOH A 101 701 241 HOH HOH . F 4 HOH A 102 702 244 HOH HOH . F 4 HOH A 103 703 248 HOH HOH . F 4 HOH A 104 704 252 HOH HOH . F 4 HOH A 105 705 264 HOH HOH . F 4 HOH A 106 706 268 HOH HOH . F 4 HOH A 107 707 278 HOH HOH . F 4 HOH A 108 708 295 HOH HOH . F 4 HOH A 109 709 298 HOH HOH . F 4 HOH A 110 710 312 HOH HOH . F 4 HOH A 111 711 314 HOH HOH . F 4 HOH A 112 712 315 HOH HOH . F 4 HOH A 113 713 316 HOH HOH . F 4 HOH A 114 714 317 HOH HOH . F 4 HOH A 115 715 318 HOH HOH . F 4 HOH A 116 716 320 HOH HOH . F 4 HOH A 117 717 321 HOH HOH . F 4 HOH A 118 718 322 HOH HOH . F 4 HOH A 119 719 323 HOH HOH . F 4 HOH A 120 720 331 HOH HOH . G 4 HOH B 1 601 91 HOH HOH . G 4 HOH B 2 602 54 HOH HOH . G 4 HOH B 3 603 20 HOH HOH . G 4 HOH B 4 604 86 HOH HOH . G 4 HOH B 5 605 324 HOH HOH . G 4 HOH B 6 606 123 HOH HOH . G 4 HOH B 7 607 114 HOH HOH . G 4 HOH B 8 608 279 HOH HOH . G 4 HOH B 9 609 240 HOH HOH . G 4 HOH B 10 610 55 HOH HOH . G 4 HOH B 11 611 116 HOH HOH . G 4 HOH B 12 612 206 HOH HOH . G 4 HOH B 13 613 18 HOH HOH . G 4 HOH B 14 614 96 HOH HOH . G 4 HOH B 15 615 292 HOH HOH . G 4 HOH B 16 616 307 HOH HOH . G 4 HOH B 17 617 197 HOH HOH . G 4 HOH B 18 618 5 HOH HOH . G 4 HOH B 19 619 9 HOH HOH . G 4 HOH B 20 620 11 HOH HOH . G 4 HOH B 21 621 23 HOH HOH . G 4 HOH B 22 622 24 HOH HOH . G 4 HOH B 23 623 25 HOH HOH . G 4 HOH B 24 624 27 HOH HOH . G 4 HOH B 25 625 38 HOH HOH . G 4 HOH B 26 626 39 HOH HOH . G 4 HOH B 27 627 45 HOH HOH . G 4 HOH B 28 628 46 HOH HOH . G 4 HOH B 29 629 48 HOH HOH . G 4 HOH B 30 630 60 HOH HOH . G 4 HOH B 31 631 61 HOH HOH . G 4 HOH B 32 632 62 HOH HOH . G 4 HOH B 33 633 63 HOH HOH . G 4 HOH B 34 634 82 HOH HOH . G 4 HOH B 35 635 92 HOH HOH . G 4 HOH B 36 636 97 HOH HOH . G 4 HOH B 37 637 98 HOH HOH . G 4 HOH B 38 638 103 HOH HOH . G 4 HOH B 39 639 104 HOH HOH . G 4 HOH B 40 640 110 HOH HOH . G 4 HOH B 41 641 129 HOH HOH . G 4 HOH B 42 642 130 HOH HOH . G 4 HOH B 43 643 145 HOH HOH . G 4 HOH B 44 644 150 HOH HOH . G 4 HOH B 45 645 152 HOH HOH . G 4 HOH B 46 646 158 HOH HOH . G 4 HOH B 47 647 161 HOH HOH . G 4 HOH B 48 648 164 HOH HOH . G 4 HOH B 49 649 165 HOH HOH . G 4 HOH B 50 650 176 HOH HOH . G 4 HOH B 51 651 178 HOH HOH . G 4 HOH B 52 652 180 HOH HOH . G 4 HOH B 53 653 181 HOH HOH . G 4 HOH B 54 654 182 HOH HOH . G 4 HOH B 55 655 190 HOH HOH . G 4 HOH B 56 656 198 HOH HOH . G 4 HOH B 57 657 199 HOH HOH . G 4 HOH B 58 658 202 HOH HOH . G 4 HOH B 59 659 208 HOH HOH . G 4 HOH B 60 660 217 HOH HOH . G 4 HOH B 61 661 224 HOH HOH . G 4 HOH B 62 662 227 HOH HOH . G 4 HOH B 63 663 230 HOH HOH . G 4 HOH B 64 664 233 HOH HOH . G 4 HOH B 65 665 234 HOH HOH . G 4 HOH B 66 666 280 HOH HOH . G 4 HOH B 67 667 281 HOH HOH . G 4 HOH B 68 668 296 HOH HOH . G 4 HOH B 69 669 297 HOH HOH . G 4 HOH B 70 670 299 HOH HOH . G 4 HOH B 71 671 300 HOH HOH . G 4 HOH B 72 672 302 HOH HOH . G 4 HOH B 73 673 304 HOH HOH . G 4 HOH B 74 674 305 HOH HOH . G 4 HOH B 75 675 308 HOH HOH . G 4 HOH B 76 676 309 HOH HOH . G 4 HOH B 77 677 310 HOH HOH . G 4 HOH B 78 678 311 HOH HOH . G 4 HOH B 79 679 313 HOH HOH . G 4 HOH B 80 680 319 HOH HOH . G 4 HOH B 81 681 325 HOH HOH . G 4 HOH B 82 682 326 HOH HOH . G 4 HOH B 83 683 327 HOH HOH . G 4 HOH B 84 684 328 HOH HOH . G 4 HOH B 85 685 329 HOH HOH . G 4 HOH B 86 686 330 HOH HOH . G 4 HOH B 87 687 332 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 13.292 47.24 37.398 1 55.83 ? C1 NAG 501 A 1 HETATM 2 C C2 NAG . . . C 2 12.244 46.394 36.669 1 55.84 ? C2 NAG 501 A 1 HETATM 3 C C3 NAG . . . C 2 11.895 47.106 35.361 1 63.71 ? C3 NAG 501 A 1 HETATM 4 C C4 NAG . . . C 2 11.393 48.521 35.647 1 68.67 ? C4 NAG 501 A 1 HETATM 5 C C5 NAG . . . C 2 12.458 49.317 36.402 1 67.28 ? C5 NAG 501 A 1 HETATM 6 C C6 NAG . . . C 2 11.981 50.679 36.858 1 70.02 ? C6 NAG 501 A 1 HETATM 7 C C7 NAG . . . C 2 12.198 43.96 37.121 1 47.01 ? C7 NAG 501 A 1 HETATM 8 C C8 NAG . . . C 2 12.631 42.615 36.626 1 43.05 ? C8 NAG 501 A 1 HETATM 9 N N2 NAG . . . C 2 12.65 45.02 36.415 1 49.19 ? N2 NAG 501 A 1 HETATM 10 O O3 NAG . . . C 2 10.904 46.368 34.652 1 65.07 ? O3 NAG 501 A 1 HETATM 11 O O4 NAG . . . C 2 11.067 49.186 34.43 1 74.05 ? O4 NAG 501 A 1 HETATM 12 O O5 NAG . . . C 2 12.866 48.603 37.586 1 61.12 ? O5 NAG 501 A 1 HETATM 13 O O6 NAG . . . C 2 11.607 51.505 35.761 1 72.83 ? O6 NAG 501 A 1 HETATM 14 O O7 NAG . . . C 2 11.476 44.084 38.111 1 49.83 ? O7 NAG 501 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #