data_4XX7 # _model_server_result.job_id Ox0kmK1VKuObei2MD_Tgeg _model_server_result.datetime_utc '2024-11-08 13:37:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xx7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":203}' # _entry.id 4XX7 # _exptl.entry_id 4XX7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XX7 _cell.length_a 67.829 _cell.length_b 68.153 _cell.length_c 87.062 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XX7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4XX7 _atom_sites.fract_transf_matrix[1][1] 0.014743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 201 1 SO4 SO4 . E 3 IPA A 1 202 2 IPA IPA . F 2 SO4 B 1 201 2 SO4 SO4 . G 2 SO4 C 1 201 3 SO4 SO4 . H 3 IPA C 1 202 1 IPA IPA . I 4 GOL C 1 203 1 GOL GOL . J 5 HOH A 1 301 436 HOH HOH . J 5 HOH A 2 302 106 HOH HOH . J 5 HOH A 3 303 14 HOH HOH . J 5 HOH A 4 304 66 HOH HOH . J 5 HOH A 5 305 178 HOH HOH . J 5 HOH A 6 306 98 HOH HOH . J 5 HOH A 7 307 404 HOH HOH . J 5 HOH A 8 308 24 HOH HOH . J 5 HOH A 9 309 60 HOH HOH . J 5 HOH A 10 310 120 HOH HOH . J 5 HOH A 11 311 88 HOH HOH . J 5 HOH A 12 312 129 HOH HOH . J 5 HOH A 13 313 221 HOH HOH . J 5 HOH A 14 314 53 HOH HOH . J 5 HOH A 15 315 166 HOH HOH . J 5 HOH A 16 316 440 HOH HOH . J 5 HOH A 17 317 33 HOH HOH . J 5 HOH A 18 318 77 HOH HOH . J 5 HOH A 19 319 400 HOH HOH . J 5 HOH A 20 320 397 HOH HOH . J 5 HOH A 21 321 312 HOH HOH . J 5 HOH A 22 322 234 HOH HOH . J 5 HOH A 23 323 391 HOH HOH . J 5 HOH A 24 324 174 HOH HOH . J 5 HOH A 25 325 200 HOH HOH . J 5 HOH A 26 326 432 HOH HOH . J 5 HOH A 27 327 22 HOH HOH . J 5 HOH A 28 328 124 HOH HOH . J 5 HOH A 29 329 431 HOH HOH . J 5 HOH A 30 330 326 HOH HOH . J 5 HOH A 31 331 319 HOH HOH . J 5 HOH A 32 332 327 HOH HOH . J 5 HOH A 33 333 3 HOH HOH . J 5 HOH A 34 334 8 HOH HOH . J 5 HOH A 35 335 10 HOH HOH . J 5 HOH A 36 336 12 HOH HOH . J 5 HOH A 37 337 13 HOH HOH . J 5 HOH A 38 338 18 HOH HOH . J 5 HOH A 39 339 21 HOH HOH . J 5 HOH A 40 340 30 HOH HOH . J 5 HOH A 41 341 40 HOH HOH . J 5 HOH A 42 342 47 HOH HOH . J 5 HOH A 43 343 49 HOH HOH . J 5 HOH A 44 344 50 HOH HOH . J 5 HOH A 45 345 51 HOH HOH . J 5 HOH A 46 346 56 HOH HOH . J 5 HOH A 47 347 73 HOH HOH . J 5 HOH A 48 348 76 HOH HOH . J 5 HOH A 49 349 78 HOH HOH . J 5 HOH A 50 350 82 HOH HOH . J 5 HOH A 51 351 85 HOH HOH . J 5 HOH A 52 352 86 HOH HOH . J 5 HOH A 53 353 87 HOH HOH . J 5 HOH A 54 354 92 HOH HOH . J 5 HOH A 55 355 93 HOH HOH . J 5 HOH A 56 356 95 HOH HOH . J 5 HOH A 57 357 102 HOH HOH . J 5 HOH A 58 358 103 HOH HOH . J 5 HOH A 59 359 105 HOH HOH . J 5 HOH A 60 360 110 HOH HOH . J 5 HOH A 61 361 117 HOH HOH . J 5 HOH A 62 362 135 HOH HOH . J 5 HOH A 63 363 138 HOH HOH . J 5 HOH A 64 364 148 HOH HOH . J 5 HOH A 65 365 154 HOH HOH . J 5 HOH A 66 366 162 HOH HOH . J 5 HOH A 67 367 163 HOH HOH . J 5 HOH A 68 368 171 HOH HOH . J 5 HOH A 69 369 173 HOH HOH . J 5 HOH A 70 370 177 HOH HOH . J 5 HOH A 71 371 180 HOH HOH . J 5 HOH A 72 372 183 HOH HOH . J 5 HOH A 73 373 187 HOH HOH . J 5 HOH A 74 374 188 HOH HOH . J 5 HOH A 75 375 189 HOH HOH . J 5 HOH A 76 376 199 HOH HOH . J 5 HOH A 77 377 201 HOH HOH . J 5 HOH A 78 378 207 HOH HOH . J 5 HOH A 79 379 215 HOH HOH . J 5 HOH A 80 380 219 HOH HOH . J 5 HOH A 81 381 229 HOH HOH . J 5 HOH A 82 382 236 HOH HOH . J 5 HOH A 83 383 240 HOH HOH . J 5 HOH A 84 384 243 HOH HOH . J 5 HOH A 85 385 248 HOH HOH . J 5 HOH A 86 386 256 HOH HOH . J 5 HOH A 87 387 257 HOH HOH . J 5 HOH A 88 388 259 HOH HOH . J 5 HOH A 89 389 268 HOH HOH . J 5 HOH A 90 390 294 HOH HOH . J 5 HOH A 91 391 324 HOH HOH . J 5 HOH A 92 392 405 HOH HOH . J 5 HOH A 93 393 406 HOH HOH . J 5 HOH A 94 394 415 HOH HOH . J 5 HOH A 95 395 439 HOH HOH . K 5 HOH B 1 301 145 HOH HOH . K 5 HOH B 2 302 212 HOH HOH . K 5 HOH B 3 303 435 HOH HOH . K 5 HOH B 4 304 26 HOH HOH . K 5 HOH B 5 305 80 HOH HOH . K 5 HOH B 6 306 206 HOH HOH . K 5 HOH B 7 307 191 HOH HOH . K 5 HOH B 8 308 153 HOH HOH . K 5 HOH B 9 309 181 HOH HOH . K 5 HOH B 10 310 355 HOH HOH . K 5 HOH B 11 311 17 HOH HOH . K 5 HOH B 12 312 123 HOH HOH . K 5 HOH B 13 313 333 HOH HOH . K 5 HOH B 14 314 15 HOH HOH . K 5 HOH B 15 315 41 HOH HOH . K 5 HOH B 16 316 213 HOH HOH . K 5 HOH B 17 317 185 HOH HOH . K 5 HOH B 18 318 11 HOH HOH . K 5 HOH B 19 319 281 HOH HOH . K 5 HOH B 20 320 190 HOH HOH . K 5 HOH B 21 321 90 HOH HOH . K 5 HOH B 22 322 402 HOH HOH . K 5 HOH B 23 323 245 HOH HOH . K 5 HOH B 24 324 388 HOH HOH . K 5 HOH B 25 325 263 HOH HOH . K 5 HOH B 26 326 407 HOH HOH . K 5 HOH B 27 327 1 HOH HOH . K 5 HOH B 28 328 5 HOH HOH . K 5 HOH B 29 329 6 HOH HOH . K 5 HOH B 30 330 16 HOH HOH . K 5 HOH B 31 331 20 HOH HOH . K 5 HOH B 32 332 32 HOH HOH . K 5 HOH B 33 333 34 HOH HOH . K 5 HOH B 34 334 36 HOH HOH . K 5 HOH B 35 335 38 HOH HOH . K 5 HOH B 36 336 42 HOH HOH . K 5 HOH B 37 337 48 HOH HOH . K 5 HOH B 38 338 55 HOH HOH . K 5 HOH B 39 339 58 HOH HOH . K 5 HOH B 40 340 62 HOH HOH . K 5 HOH B 41 341 67 HOH HOH . K 5 HOH B 42 342 70 HOH HOH . K 5 HOH B 43 343 71 HOH HOH . K 5 HOH B 44 344 72 HOH HOH . K 5 HOH B 45 345 74 HOH HOH . K 5 HOH B 46 346 81 HOH HOH . K 5 HOH B 47 347 83 HOH HOH . K 5 HOH B 48 348 97 HOH HOH . K 5 HOH B 49 349 99 HOH HOH . K 5 HOH B 50 350 100 HOH HOH . K 5 HOH B 51 351 108 HOH HOH . K 5 HOH B 52 352 113 HOH HOH . K 5 HOH B 53 353 114 HOH HOH . K 5 HOH B 54 354 121 HOH HOH . K 5 HOH B 55 355 128 HOH HOH . K 5 HOH B 56 356 130 HOH HOH . K 5 HOH B 57 357 131 HOH HOH . K 5 HOH B 58 358 136 HOH HOH . K 5 HOH B 59 359 139 HOH HOH . K 5 HOH B 60 360 143 HOH HOH . K 5 HOH B 61 361 147 HOH HOH . K 5 HOH B 62 362 150 HOH HOH . K 5 HOH B 63 363 165 HOH HOH . K 5 HOH B 64 364 208 HOH HOH . K 5 HOH B 65 365 216 HOH HOH . K 5 HOH B 66 366 217 HOH HOH . K 5 HOH B 67 367 220 HOH HOH . K 5 HOH B 68 368 224 HOH HOH . K 5 HOH B 69 369 225 HOH HOH . K 5 HOH B 70 370 227 HOH HOH . K 5 HOH B 71 371 228 HOH HOH . K 5 HOH B 72 372 230 HOH HOH . K 5 HOH B 73 373 235 HOH HOH . K 5 HOH B 74 374 242 HOH HOH . K 5 HOH B 75 375 247 HOH HOH . K 5 HOH B 76 376 255 HOH HOH . K 5 HOH B 77 377 276 HOH HOH . K 5 HOH B 78 378 283 HOH HOH . K 5 HOH B 79 379 284 HOH HOH . K 5 HOH B 80 380 338 HOH HOH . K 5 HOH B 81 381 367 HOH HOH . K 5 HOH B 82 382 373 HOH HOH . K 5 HOH B 83 383 380 HOH HOH . K 5 HOH B 84 384 396 HOH HOH . K 5 HOH B 85 385 399 HOH HOH . K 5 HOH B 86 386 408 HOH HOH . K 5 HOH B 87 387 413 HOH HOH . K 5 HOH B 88 388 437 HOH HOH . K 5 HOH B 89 389 438 HOH HOH . L 5 HOH C 1 301 226 HOH HOH . L 5 HOH C 2 302 267 HOH HOH . L 5 HOH C 3 303 122 HOH HOH . L 5 HOH C 4 304 137 HOH HOH . L 5 HOH C 5 305 104 HOH HOH . L 5 HOH C 6 306 141 HOH HOH . L 5 HOH C 7 307 252 HOH HOH . L 5 HOH C 8 308 279 HOH HOH . L 5 HOH C 9 309 25 HOH HOH . L 5 HOH C 10 310 151 HOH HOH . L 5 HOH C 11 311 115 HOH HOH . L 5 HOH C 12 312 184 HOH HOH . L 5 HOH C 13 313 111 HOH HOH . L 5 HOH C 14 314 127 HOH HOH . L 5 HOH C 15 315 287 HOH HOH . L 5 HOH C 16 316 416 HOH HOH . L 5 HOH C 17 317 170 HOH HOH . L 5 HOH C 18 318 297 HOH HOH . L 5 HOH C 19 319 175 HOH HOH . L 5 HOH C 20 320 442 HOH HOH . L 5 HOH C 21 321 393 HOH HOH . L 5 HOH C 22 322 344 HOH HOH . L 5 HOH C 23 323 262 HOH HOH . L 5 HOH C 24 324 2 HOH HOH . L 5 HOH C 25 325 4 HOH HOH . L 5 HOH C 26 326 7 HOH HOH . L 5 HOH C 27 327 19 HOH HOH . L 5 HOH C 28 328 23 HOH HOH . L 5 HOH C 29 329 28 HOH HOH . L 5 HOH C 30 330 29 HOH HOH . L 5 HOH C 31 331 37 HOH HOH . L 5 HOH C 32 332 39 HOH HOH . L 5 HOH C 33 333 44 HOH HOH . L 5 HOH C 34 334 45 HOH HOH . L 5 HOH C 35 335 46 HOH HOH . L 5 HOH C 36 336 52 HOH HOH . L 5 HOH C 37 337 54 HOH HOH . L 5 HOH C 38 338 57 HOH HOH . L 5 HOH C 39 339 59 HOH HOH . L 5 HOH C 40 340 61 HOH HOH . L 5 HOH C 41 341 63 HOH HOH . L 5 HOH C 42 342 64 HOH HOH . L 5 HOH C 43 343 65 HOH HOH . L 5 HOH C 44 344 68 HOH HOH . L 5 HOH C 45 345 75 HOH HOH . L 5 HOH C 46 346 79 HOH HOH . L 5 HOH C 47 347 84 HOH HOH . L 5 HOH C 48 348 89 HOH HOH . L 5 HOH C 49 349 91 HOH HOH . L 5 HOH C 50 350 94 HOH HOH . L 5 HOH C 51 351 96 HOH HOH . L 5 HOH C 52 352 101 HOH HOH . L 5 HOH C 53 353 107 HOH HOH . L 5 HOH C 54 354 112 HOH HOH . L 5 HOH C 55 355 116 HOH HOH . L 5 HOH C 56 356 119 HOH HOH . L 5 HOH C 57 357 125 HOH HOH . L 5 HOH C 58 358 126 HOH HOH . L 5 HOH C 59 359 133 HOH HOH . L 5 HOH C 60 360 134 HOH HOH . L 5 HOH C 61 361 140 HOH HOH . L 5 HOH C 62 362 142 HOH HOH . L 5 HOH C 63 363 144 HOH HOH . L 5 HOH C 64 364 152 HOH HOH . L 5 HOH C 65 365 155 HOH HOH . L 5 HOH C 66 366 158 HOH HOH . L 5 HOH C 67 367 159 HOH HOH . L 5 HOH C 68 368 161 HOH HOH . L 5 HOH C 69 369 164 HOH HOH . L 5 HOH C 70 370 167 HOH HOH . L 5 HOH C 71 371 168 HOH HOH . L 5 HOH C 72 372 176 HOH HOH . L 5 HOH C 73 373 182 HOH HOH . L 5 HOH C 74 374 186 HOH HOH . L 5 HOH C 75 375 192 HOH HOH . L 5 HOH C 76 376 194 HOH HOH . L 5 HOH C 77 377 196 HOH HOH . L 5 HOH C 78 378 202 HOH HOH . L 5 HOH C 79 379 209 HOH HOH . L 5 HOH C 80 380 210 HOH HOH . L 5 HOH C 81 381 218 HOH HOH . L 5 HOH C 82 382 223 HOH HOH . L 5 HOH C 83 383 232 HOH HOH . L 5 HOH C 84 384 233 HOH HOH . L 5 HOH C 85 385 251 HOH HOH . L 5 HOH C 86 386 253 HOH HOH . L 5 HOH C 87 387 269 HOH HOH . L 5 HOH C 88 388 272 HOH HOH . L 5 HOH C 89 389 282 HOH HOH . L 5 HOH C 90 390 296 HOH HOH . L 5 HOH C 91 391 304 HOH HOH . L 5 HOH C 92 392 305 HOH HOH . L 5 HOH C 93 393 308 HOH HOH . L 5 HOH C 94 394 314 HOH HOH . L 5 HOH C 95 395 323 HOH HOH . L 5 HOH C 96 396 353 HOH HOH . L 5 HOH C 97 397 358 HOH HOH . L 5 HOH C 98 398 390 HOH HOH . L 5 HOH C 99 399 392 HOH HOH . L 5 HOH C 100 400 395 HOH HOH . L 5 HOH C 101 401 398 HOH HOH . L 5 HOH C 102 402 409 HOH HOH . L 5 HOH C 103 403 418 HOH HOH . L 5 HOH C 104 404 433 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 18.878 -0.342 -20.44 1 26.47 ? C1 GOL 203 C 1 HETATM 2 O O1 GOL . . . I 4 19.012 -1.516 -19.553 1 23.7 ? O1 GOL 203 C 1 HETATM 3 C C2 GOL . . . I 4 19.217 -0.77 -21.797 1 24.99 ? C2 GOL 203 C 1 HETATM 4 O O2 GOL . . . I 4 18.532 -1.961 -22.09 1 29.37 ? O2 GOL 203 C 1 HETATM 5 C C3 GOL . . . I 4 18.832 0.321 -22.831 1 22.95 ? C3 GOL 203 C 1 HETATM 6 O O3 GOL . . . I 4 19.264 -0.048 -24.166 1 23.48 ? O3 GOL 203 C 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #