data_4XXB # _model_server_result.job_id PX528o03cuzwu2deYiesUg _model_server_result.datetime_utc '2024-11-05 01:30:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4XXB # _exptl.entry_id 4XXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XXB _cell.length_a 58.307 _cell.length_b 58.307 _cell.length_c 115.129 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 25 A CYS 25 1_555 E ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc2 C N3 IMD . A IMD 201 1_555 E ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc3 E ZN ZN . A ZN 203 1_555 G O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc4 E ZN ZN . A ZN 203 1_555 B NE2 HIS 29 B HIS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc5 B SG CYS 16 B CYS 305 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc6 B SG CYS 19 B CYS 308 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc7 B SG CYS 30 B CYS 319 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc8 B SG CYS 33 B CYS 322 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 182 n y N1 C5 IMD sing 183 n y N1 HN1 IMD sing 184 n n C2 N3 IMD doub 185 n y C2 H2 IMD sing 186 n n N3 C4 IMD sing 187 n y N3 HN3 IMD sing 188 n n C4 C5 IMD doub 189 n y C4 H4 IMD sing 190 n n C5 H5 IMD sing 191 n n # _atom_sites.entry_id 4XXB _atom_sites.fract_transf_matrix[1][1] 0.017151 _atom_sites.fract_transf_matrix[1][2] 0.009902 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IMD A 1 201 2 IMD IMD . D 4 BME A 1 202 3 BME BME . E 5 ZN A 1 203 1 ZN ZN . F 5 ZN B 1 501 400 ZN ZN . G 6 HOH A 1 301 69 HOH HOH . G 6 HOH A 2 302 58 HOH HOH . G 6 HOH A 3 303 41 HOH HOH . G 6 HOH A 4 304 37 HOH HOH . G 6 HOH A 5 305 54 HOH HOH . G 6 HOH A 6 306 27 HOH HOH . G 6 HOH A 7 307 46 HOH HOH . G 6 HOH A 8 308 19 HOH HOH . G 6 HOH A 9 309 47 HOH HOH . G 6 HOH A 10 310 71 HOH HOH . G 6 HOH A 11 311 17 HOH HOH . G 6 HOH A 12 312 40 HOH HOH . G 6 HOH A 13 313 23 HOH HOH . G 6 HOH A 14 314 7 HOH HOH . G 6 HOH A 15 315 68 HOH HOH . G 6 HOH A 16 316 56 HOH HOH . G 6 HOH A 17 317 44 HOH HOH . G 6 HOH A 18 318 45 HOH HOH . G 6 HOH A 19 319 76 HOH HOH . G 6 HOH A 20 320 8 HOH HOH . G 6 HOH A 21 321 35 HOH HOH . G 6 HOH A 22 322 1 HOH HOH . G 6 HOH A 23 323 4 HOH HOH . G 6 HOH A 24 324 9 HOH HOH . G 6 HOH A 25 325 10 HOH HOH . G 6 HOH A 26 326 13 HOH HOH . G 6 HOH A 27 327 14 HOH HOH . G 6 HOH A 28 328 16 HOH HOH . G 6 HOH A 29 329 18 HOH HOH . G 6 HOH A 30 330 20 HOH HOH . G 6 HOH A 31 331 21 HOH HOH . G 6 HOH A 32 332 22 HOH HOH . G 6 HOH A 33 333 24 HOH HOH . G 6 HOH A 34 334 25 HOH HOH . G 6 HOH A 35 335 26 HOH HOH . G 6 HOH A 36 336 28 HOH HOH . G 6 HOH A 37 337 34 HOH HOH . G 6 HOH A 38 338 36 HOH HOH . G 6 HOH A 39 339 39 HOH HOH . G 6 HOH A 40 340 49 HOH HOH . G 6 HOH A 41 341 50 HOH HOH . G 6 HOH A 42 342 53 HOH HOH . G 6 HOH A 43 343 55 HOH HOH . G 6 HOH A 44 344 59 HOH HOH . G 6 HOH A 45 345 61 HOH HOH . G 6 HOH A 46 346 62 HOH HOH . G 6 HOH A 47 347 63 HOH HOH . G 6 HOH A 48 348 64 HOH HOH . G 6 HOH A 49 349 66 HOH HOH . G 6 HOH A 50 350 70 HOH HOH . G 6 HOH A 51 351 77 HOH HOH . G 6 HOH A 52 352 78 HOH HOH . G 6 HOH A 53 353 79 HOH HOH . G 6 HOH A 54 354 80 HOH HOH . G 6 HOH A 55 355 81 HOH HOH . G 6 HOH A 56 356 82 HOH HOH . G 6 HOH A 57 357 83 HOH HOH . H 6 HOH B 1 601 29 HOH HOH . H 6 HOH B 2 602 65 HOH HOH . H 6 HOH B 3 603 75 HOH HOH . H 6 HOH B 4 604 12 HOH HOH . H 6 HOH B 5 605 84 HOH HOH . H 6 HOH B 6 606 33 HOH HOH . H 6 HOH B 7 607 57 HOH HOH . H 6 HOH B 8 608 32 HOH HOH . H 6 HOH B 9 609 2 HOH HOH . H 6 HOH B 10 610 3 HOH HOH . H 6 HOH B 11 611 5 HOH HOH . H 6 HOH B 12 612 6 HOH HOH . H 6 HOH B 13 613 11 HOH HOH . H 6 HOH B 14 614 15 HOH HOH . H 6 HOH B 15 615 30 HOH HOH . H 6 HOH B 16 616 31 HOH HOH . H 6 HOH B 17 617 38 HOH HOH . H 6 HOH B 18 618 42 HOH HOH . H 6 HOH B 19 619 43 HOH HOH . H 6 HOH B 20 620 48 HOH HOH . H 6 HOH B 21 621 51 HOH HOH . H 6 HOH B 22 622 52 HOH HOH . H 6 HOH B 23 623 60 HOH HOH . H 6 HOH B 24 624 67 HOH HOH . H 6 HOH B 25 625 72 HOH HOH . H 6 HOH B 26 626 73 HOH HOH . H 6 HOH B 27 627 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . C 3 -32.005 12.116 24.933 1 48.83 ? N1 IMD 201 A 1 HETATM 2 C C2 IMD . . . C 3 -32.713 13.274 24.987 1 50.38 ? C2 IMD 201 A 1 HETATM 3 N N3 IMD . . . C 3 -33.028 13.662 23.723 1 47.74 ? N3 IMD 201 A 1 HETATM 4 C C4 IMD . . . C 3 -32.507 12.746 22.879 1 49.33 ? C4 IMD 201 A 1 HETATM 5 C C5 IMD . . . C 3 -31.867 11.78 23.635 1 49.55 ? C5 IMD 201 A 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #