data_4XXJ # _model_server_result.job_id q9AalvdSPNAhMrLIJSwwTw _model_server_result.datetime_utc '2024-11-13 10:05:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xxj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":301}' # _entry.id 4XXJ # _exptl.entry_id 4XXJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 33 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.78 _cell.angle_gamma 90 _cell.entry_id 4XXJ _cell.length_a 105.84 _cell.length_b 60.76 _cell.length_c 113.36 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 216 A ALA 215 1_555 A N LYR 217 A LYR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C LYR 217 A LYR 216 1_555 A N VAL 218 A VAL 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C ALA 216 B ALA 215 1_555 B N LYR 217 B LYR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C LYR 217 B LYR 216 1_555 B N VAL 218 B VAL 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 C C ALA 216 C ALA 215 1_555 C N LYR 217 C LYR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 C C LYR 217 C LYR 216 1_555 C N VAL 218 C VAL 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 181 n n C1 H11 LFA sing 182 n n C1 H12 LFA sing 183 n n C1 H13 LFA sing 184 n n C2 C3 LFA sing 185 n n C2 H21 LFA sing 186 n n C2 H22 LFA sing 187 n n C3 C4 LFA sing 188 n n C3 H31 LFA sing 189 n n C3 H32 LFA sing 190 n n C4 C5 LFA sing 191 n n C4 H41 LFA sing 192 n n C4 H42 LFA sing 193 n n C5 C6 LFA sing 194 n n C5 H51 LFA sing 195 n n C5 H52 LFA sing 196 n n C6 C7 LFA sing 197 n n C6 H61 LFA sing 198 n n C6 H62 LFA sing 199 n n C7 C8 LFA sing 200 n n C7 H71 LFA sing 201 n n C7 H72 LFA sing 202 n n C8 C9 LFA sing 203 n n C8 H81 LFA sing 204 n n C8 H82 LFA sing 205 n n C9 C10 LFA sing 206 n n C9 H91 LFA sing 207 n n C9 H92 LFA sing 208 n n C10 C11 LFA sing 209 n n C10 H101 LFA sing 210 n n C10 H102 LFA sing 211 n n C11 C12 LFA sing 212 n n C11 H111 LFA sing 213 n n C11 H112 LFA sing 214 n n C12 C13 LFA sing 215 n n C12 H121 LFA sing 216 n n C12 H122 LFA sing 217 n n C13 C14 LFA sing 218 n n C13 H131 LFA sing 219 n n C13 H132 LFA sing 220 n n C14 C15 LFA sing 221 n n C14 H141 LFA sing 222 n n C14 H142 LFA sing 223 n n C15 C16 LFA sing 224 n n C15 H151 LFA sing 225 n n C15 H152 LFA sing 226 n n C16 C17 LFA sing 227 n n C16 H161 LFA sing 228 n n C16 H162 LFA sing 229 n n C17 C18 LFA sing 230 n n C17 H171 LFA sing 231 n n C17 H172 LFA sing 232 n n C18 C19 LFA sing 233 n n C18 H181 LFA sing 234 n n C18 H182 LFA sing 235 n n C19 C20 LFA sing 236 n n C19 H191 LFA sing 237 n n C19 H192 LFA sing 238 n n C20 H201 LFA sing 239 n n C20 H202 LFA sing 240 n n C20 H203 LFA sing 241 n n # _atom_sites.entry_id 4XXJ _atom_sites.fract_transf_matrix[1][1] 0.009448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001628 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 LFA A 1 301 3 LFA LFA . E 2 LFA A 1 302 6 LFA LFA . F 2 LFA A 1 303 8 LFA LFA . G 2 LFA A 1 304 9 LFA LFA . H 2 LFA A 1 305 14 LFA LFA . I 2 LFA A 1 306 15 LFA LFA . J 2 LFA A 1 307 16 LFA LFA . K 2 LFA A 1 308 17 LFA LFA . L 2 LFA A 1 309 20 LFA LFA . M 2 LFA A 1 310 27 LFA LFA . N 2 LFA A 1 311 33 LFA LFA . O 2 LFA A 1 312 34 LFA LFA . P 2 LFA A 1 313 35 LFA LFA . Q 3 MPG A 1 314 5280 MPG MPG . R 2 LFA B 1 301 4 LFA LFA . S 2 LFA B 1 302 5 LFA LFA . T 2 LFA B 1 303 18 LFA LFA . U 2 LFA B 1 304 21 LFA LFA . V 2 LFA B 1 305 22 LFA LFA . W 2 LFA B 1 306 23 LFA LFA . X 2 LFA B 1 307 30 LFA LFA . Y 2 LFA B 1 308 32 LFA LFA . Z 3 MPG B 1 309 5278 MPG MPG . AA 2 LFA C 1 301 1 LFA LFA . BA 2 LFA C 1 302 2 LFA LFA . CA 2 LFA C 1 303 7 LFA LFA . DA 2 LFA C 1 304 12 LFA LFA . EA 2 LFA C 1 305 13 LFA LFA . FA 2 LFA C 1 306 24 LFA LFA . GA 2 LFA C 1 307 25 LFA LFA . HA 2 LFA C 1 308 26 LFA LFA . IA 2 LFA C 1 309 28 LFA LFA . JA 2 LFA C 1 310 29 LFA LFA . KA 2 LFA C 1 311 31 LFA LFA . LA 2 LFA C 1 312 36 LFA LFA . MA 3 MPG C 1 313 5279 MPG MPG . NA 4 HOH A 1 401 36 HOH HOH . NA 4 HOH A 2 402 57 HOH HOH . NA 4 HOH A 3 403 56 HOH HOH . NA 4 HOH A 4 404 1 HOH HOH . NA 4 HOH A 5 405 2 HOH HOH . NA 4 HOH A 6 406 3 HOH HOH . NA 4 HOH A 7 407 4 HOH HOH . NA 4 HOH A 8 408 5 HOH HOH . NA 4 HOH A 9 409 6 HOH HOH . NA 4 HOH A 10 410 20 HOH HOH . NA 4 HOH A 11 411 24 HOH HOH . NA 4 HOH A 12 412 25 HOH HOH . NA 4 HOH A 13 413 32 HOH HOH . NA 4 HOH A 14 414 33 HOH HOH . NA 4 HOH A 15 415 34 HOH HOH . NA 4 HOH A 16 416 35 HOH HOH . NA 4 HOH A 17 417 37 HOH HOH . NA 4 HOH A 18 418 43 HOH HOH . NA 4 HOH A 19 419 44 HOH HOH . NA 4 HOH A 20 420 47 HOH HOH . NA 4 HOH A 21 421 55 HOH HOH . NA 4 HOH A 22 422 58 HOH HOH . NA 4 HOH A 23 423 67 HOH HOH . NA 4 HOH A 24 424 73 HOH HOH . NA 4 HOH A 25 425 74 HOH HOH . NA 4 HOH A 26 426 77 HOH HOH . NA 4 HOH A 27 427 79 HOH HOH . NA 4 HOH A 28 428 81 HOH HOH . NA 4 HOH A 29 429 85 HOH HOH . NA 4 HOH A 30 430 86 HOH HOH . NA 4 HOH A 31 431 87 HOH HOH . NA 4 HOH A 32 432 91 HOH HOH . OA 4 HOH B 1 401 62 HOH HOH . OA 4 HOH B 2 402 80 HOH HOH . OA 4 HOH B 3 403 7 HOH HOH . OA 4 HOH B 4 404 8 HOH HOH . OA 4 HOH B 5 405 9 HOH HOH . OA 4 HOH B 6 406 10 HOH HOH . OA 4 HOH B 7 407 11 HOH HOH . OA 4 HOH B 8 408 19 HOH HOH . OA 4 HOH B 9 409 21 HOH HOH . OA 4 HOH B 10 410 23 HOH HOH . OA 4 HOH B 11 411 27 HOH HOH . OA 4 HOH B 12 412 28 HOH HOH . OA 4 HOH B 13 413 29 HOH HOH . OA 4 HOH B 14 414 30 HOH HOH . OA 4 HOH B 15 415 41 HOH HOH . OA 4 HOH B 16 416 42 HOH HOH . OA 4 HOH B 17 417 48 HOH HOH . OA 4 HOH B 18 418 50 HOH HOH . OA 4 HOH B 19 419 59 HOH HOH . OA 4 HOH B 20 420 61 HOH HOH . OA 4 HOH B 21 421 64 HOH HOH . OA 4 HOH B 22 422 66 HOH HOH . OA 4 HOH B 23 423 70 HOH HOH . OA 4 HOH B 24 424 75 HOH HOH . OA 4 HOH B 25 425 76 HOH HOH . OA 4 HOH B 26 426 78 HOH HOH . OA 4 HOH B 27 427 82 HOH HOH . OA 4 HOH B 28 428 84 HOH HOH . PA 4 HOH C 1 401 72 HOH HOH . PA 4 HOH C 2 402 49 HOH HOH . PA 4 HOH C 3 403 39 HOH HOH . PA 4 HOH C 4 404 63 HOH HOH . PA 4 HOH C 5 405 38 HOH HOH . PA 4 HOH C 6 406 52 HOH HOH . PA 4 HOH C 7 407 12 HOH HOH . PA 4 HOH C 8 408 14 HOH HOH . PA 4 HOH C 9 409 15 HOH HOH . PA 4 HOH C 10 410 16 HOH HOH . PA 4 HOH C 11 411 17 HOH HOH . PA 4 HOH C 12 412 18 HOH HOH . PA 4 HOH C 13 413 22 HOH HOH . PA 4 HOH C 14 414 26 HOH HOH . PA 4 HOH C 15 415 31 HOH HOH . PA 4 HOH C 16 416 40 HOH HOH . PA 4 HOH C 17 417 45 HOH HOH . PA 4 HOH C 18 418 46 HOH HOH . PA 4 HOH C 19 419 51 HOH HOH . PA 4 HOH C 20 420 53 HOH HOH . PA 4 HOH C 21 421 54 HOH HOH . PA 4 HOH C 22 422 60 HOH HOH . PA 4 HOH C 23 423 65 HOH HOH . PA 4 HOH C 24 424 68 HOH HOH . PA 4 HOH C 25 425 69 HOH HOH . PA 4 HOH C 26 426 71 HOH HOH . PA 4 HOH C 27 427 83 HOH HOH . PA 4 HOH C 28 428 88 HOH HOH . PA 4 HOH C 29 429 89 HOH HOH . PA 4 HOH C 30 430 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 LFA . . . R 2 8.813 -16.136 18.598 1 46.29 ? C2 LFA 301 B 1 HETATM 2 C C3 LFA . . . R 2 8.276 -15.733 17.23 1 53.36 ? C3 LFA 301 B 1 HETATM 3 C C4 LFA . . . R 2 8.93 -16.539 16.113 1 46.09 ? C4 LFA 301 B 1 HETATM 4 C C5 LFA . . . R 2 9.202 -15.664 14.895 1 43.48 ? C5 LFA 301 B 1 HETATM 5 C C6 LFA . . . R 2 9.251 -16.488 13.615 1 40.71 ? C6 LFA 301 B 1 HETATM 6 C C7 LFA . . . R 2 9.082 -15.612 12.383 1 43.65 ? C7 LFA 301 B 1 HETATM 7 C C8 LFA . . . R 2 9.035 -16.455 11.113 1 36.56 ? C8 LFA 301 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #