data_4XXJ # _model_server_result.job_id qOIy7BMLyaEKlP0JDkMbSQ _model_server_result.datetime_utc '2024-11-13 10:07:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xxj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":309}' # _entry.id 4XXJ # _exptl.entry_id 4XXJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.78 _cell.angle_gamma 90 _cell.entry_id 4XXJ _cell.length_a 105.84 _cell.length_b 60.76 _cell.length_c 113.36 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 Q N N ? 3 Z N N ? 3 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 216 A ALA 215 1_555 A N LYR 217 A LYR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C LYR 217 A LYR 216 1_555 A N VAL 218 A VAL 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C ALA 216 B ALA 215 1_555 B N LYR 217 B LYR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C LYR 217 B LYR 216 1_555 B N VAL 218 B VAL 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 C C ALA 216 C ALA 215 1_555 C N LYR 217 C LYR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 C C LYR 217 C LYR 216 1_555 C N VAL 218 C VAL 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 357 n n C2 C1 MPG sing 358 n n C3 C4 MPG sing 359 n n C4 C5 MPG sing 360 n n C5 C6 MPG sing 361 n n C6 C7 MPG sing 362 n n C7 C8 MPG sing 363 n n C8 C9 MPG sing 364 n n C9 C10 MPG doub 365 z n C10 C11 MPG sing 366 n n C11 C12 MPG sing 367 n n C12 C13 MPG sing 368 n n C13 C14 MPG sing 369 n n C14 C15 MPG sing 370 n n C15 C16 MPG sing 371 n n C16 C17 MPG sing 372 n n C17 C18 MPG sing 373 n n O1 C1 MPG sing 374 n n O1 CX3 MPG sing 375 n n CXD O2 MPG sing 376 n n CXD C21 MPG sing 377 n n CXD CX3 MPG sing 378 n n C21 O3 MPG sing 379 n n C2 H21C MPG sing 380 n n C2 H22C MPG sing 381 n n C3 H31C MPG sing 382 n n C3 H32C MPG sing 383 n n CX3 O4 MPG doub 384 n n C4 H41C MPG sing 385 n n C4 H42C MPG sing 386 n n C5 H51C MPG sing 387 n n C5 H52C MPG sing 388 n n C6 H61C MPG sing 389 n n C6 H62C MPG sing 390 n n C7 H71C MPG sing 391 n n C7 H72C MPG sing 392 n n C8 H81C MPG sing 393 n n C8 H82C MPG sing 394 n n C9 H9 MPG sing 395 n n C10 H10 MPG sing 396 n n C11 H111 MPG sing 397 n n C11 H112 MPG sing 398 n n C12 H121 MPG sing 399 n n C12 H122 MPG sing 400 n n C13 H131 MPG sing 401 n n C13 H132 MPG sing 402 n n C14 H141 MPG sing 403 n n C14 H142 MPG sing 404 n n C15 H151 MPG sing 405 n n C15 H152 MPG sing 406 n n C16 H161 MPG sing 407 n n C16 H162 MPG sing 408 n n C17 H171 MPG sing 409 n n C17 H172 MPG sing 410 n n C18 H181 MPG sing 411 n n C18 H182 MPG sing 412 n n C18 H183 MPG sing 413 n n C1 HX31 MPG sing 414 n n C1 HX32 MPG sing 415 n n CXD HXD MPG sing 416 n n O2 H2 MPG sing 417 n n C21 H211 MPG sing 418 n n C21 H212 MPG sing 419 n n O3 H3 MPG sing 420 n n # _atom_sites.entry_id 4XXJ _atom_sites.fract_transf_matrix[1][1] 0.009448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001628 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 LFA A 1 301 3 LFA LFA . E 2 LFA A 1 302 6 LFA LFA . F 2 LFA A 1 303 8 LFA LFA . G 2 LFA A 1 304 9 LFA LFA . H 2 LFA A 1 305 14 LFA LFA . I 2 LFA A 1 306 15 LFA LFA . J 2 LFA A 1 307 16 LFA LFA . K 2 LFA A 1 308 17 LFA LFA . L 2 LFA A 1 309 20 LFA LFA . M 2 LFA A 1 310 27 LFA LFA . N 2 LFA A 1 311 33 LFA LFA . O 2 LFA A 1 312 34 LFA LFA . P 2 LFA A 1 313 35 LFA LFA . Q 3 MPG A 1 314 5280 MPG MPG . R 2 LFA B 1 301 4 LFA LFA . S 2 LFA B 1 302 5 LFA LFA . T 2 LFA B 1 303 18 LFA LFA . U 2 LFA B 1 304 21 LFA LFA . V 2 LFA B 1 305 22 LFA LFA . W 2 LFA B 1 306 23 LFA LFA . X 2 LFA B 1 307 30 LFA LFA . Y 2 LFA B 1 308 32 LFA LFA . Z 3 MPG B 1 309 5278 MPG MPG . AA 2 LFA C 1 301 1 LFA LFA . BA 2 LFA C 1 302 2 LFA LFA . CA 2 LFA C 1 303 7 LFA LFA . DA 2 LFA C 1 304 12 LFA LFA . EA 2 LFA C 1 305 13 LFA LFA . FA 2 LFA C 1 306 24 LFA LFA . GA 2 LFA C 1 307 25 LFA LFA . HA 2 LFA C 1 308 26 LFA LFA . IA 2 LFA C 1 309 28 LFA LFA . JA 2 LFA C 1 310 29 LFA LFA . KA 2 LFA C 1 311 31 LFA LFA . LA 2 LFA C 1 312 36 LFA LFA . MA 3 MPG C 1 313 5279 MPG MPG . NA 4 HOH A 1 401 36 HOH HOH . NA 4 HOH A 2 402 57 HOH HOH . NA 4 HOH A 3 403 56 HOH HOH . NA 4 HOH A 4 404 1 HOH HOH . NA 4 HOH A 5 405 2 HOH HOH . NA 4 HOH A 6 406 3 HOH HOH . NA 4 HOH A 7 407 4 HOH HOH . NA 4 HOH A 8 408 5 HOH HOH . NA 4 HOH A 9 409 6 HOH HOH . NA 4 HOH A 10 410 20 HOH HOH . NA 4 HOH A 11 411 24 HOH HOH . NA 4 HOH A 12 412 25 HOH HOH . NA 4 HOH A 13 413 32 HOH HOH . NA 4 HOH A 14 414 33 HOH HOH . NA 4 HOH A 15 415 34 HOH HOH . NA 4 HOH A 16 416 35 HOH HOH . NA 4 HOH A 17 417 37 HOH HOH . NA 4 HOH A 18 418 43 HOH HOH . NA 4 HOH A 19 419 44 HOH HOH . NA 4 HOH A 20 420 47 HOH HOH . NA 4 HOH A 21 421 55 HOH HOH . NA 4 HOH A 22 422 58 HOH HOH . NA 4 HOH A 23 423 67 HOH HOH . NA 4 HOH A 24 424 73 HOH HOH . NA 4 HOH A 25 425 74 HOH HOH . NA 4 HOH A 26 426 77 HOH HOH . NA 4 HOH A 27 427 79 HOH HOH . NA 4 HOH A 28 428 81 HOH HOH . NA 4 HOH A 29 429 85 HOH HOH . NA 4 HOH A 30 430 86 HOH HOH . NA 4 HOH A 31 431 87 HOH HOH . NA 4 HOH A 32 432 91 HOH HOH . OA 4 HOH B 1 401 62 HOH HOH . OA 4 HOH B 2 402 80 HOH HOH . OA 4 HOH B 3 403 7 HOH HOH . OA 4 HOH B 4 404 8 HOH HOH . OA 4 HOH B 5 405 9 HOH HOH . OA 4 HOH B 6 406 10 HOH HOH . OA 4 HOH B 7 407 11 HOH HOH . OA 4 HOH B 8 408 19 HOH HOH . OA 4 HOH B 9 409 21 HOH HOH . OA 4 HOH B 10 410 23 HOH HOH . OA 4 HOH B 11 411 27 HOH HOH . OA 4 HOH B 12 412 28 HOH HOH . OA 4 HOH B 13 413 29 HOH HOH . OA 4 HOH B 14 414 30 HOH HOH . OA 4 HOH B 15 415 41 HOH HOH . OA 4 HOH B 16 416 42 HOH HOH . OA 4 HOH B 17 417 48 HOH HOH . OA 4 HOH B 18 418 50 HOH HOH . OA 4 HOH B 19 419 59 HOH HOH . OA 4 HOH B 20 420 61 HOH HOH . OA 4 HOH B 21 421 64 HOH HOH . OA 4 HOH B 22 422 66 HOH HOH . OA 4 HOH B 23 423 70 HOH HOH . OA 4 HOH B 24 424 75 HOH HOH . OA 4 HOH B 25 425 76 HOH HOH . OA 4 HOH B 26 426 78 HOH HOH . OA 4 HOH B 27 427 82 HOH HOH . OA 4 HOH B 28 428 84 HOH HOH . PA 4 HOH C 1 401 72 HOH HOH . PA 4 HOH C 2 402 49 HOH HOH . PA 4 HOH C 3 403 39 HOH HOH . PA 4 HOH C 4 404 63 HOH HOH . PA 4 HOH C 5 405 38 HOH HOH . PA 4 HOH C 6 406 52 HOH HOH . PA 4 HOH C 7 407 12 HOH HOH . PA 4 HOH C 8 408 14 HOH HOH . PA 4 HOH C 9 409 15 HOH HOH . PA 4 HOH C 10 410 16 HOH HOH . PA 4 HOH C 11 411 17 HOH HOH . PA 4 HOH C 12 412 18 HOH HOH . PA 4 HOH C 13 413 22 HOH HOH . PA 4 HOH C 14 414 26 HOH HOH . PA 4 HOH C 15 415 31 HOH HOH . PA 4 HOH C 16 416 40 HOH HOH . PA 4 HOH C 17 417 45 HOH HOH . PA 4 HOH C 18 418 46 HOH HOH . PA 4 HOH C 19 419 51 HOH HOH . PA 4 HOH C 20 420 53 HOH HOH . PA 4 HOH C 21 421 54 HOH HOH . PA 4 HOH C 22 422 60 HOH HOH . PA 4 HOH C 23 423 65 HOH HOH . PA 4 HOH C 24 424 68 HOH HOH . PA 4 HOH C 25 425 69 HOH HOH . PA 4 HOH C 26 426 71 HOH HOH . PA 4 HOH C 27 427 83 HOH HOH . PA 4 HOH C 28 428 88 HOH HOH . PA 4 HOH C 29 429 89 HOH HOH . PA 4 HOH C 30 430 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . Z 3 24.283 -15.082 34.321 1 45.73 ? C2 MPG 309 B 1 HETATM 2 C C3 MPG . . . Z 3 24.847 -15.182 32.912 1 47.3 ? C3 MPG 309 B 1 HETATM 3 C C4 MPG . . . Z 3 23.764 -15.545 31.909 1 44.78 ? C4 MPG 309 B 1 HETATM 4 C C5 MPG . . . Z 3 24.351 -15.658 30.509 1 46.46 ? C5 MPG 309 B 1 HETATM 5 C C6 MPG . . . Z 3 24.491 -17.115 30.104 1 46.01 ? C6 MPG 309 B 1 HETATM 6 C C7 MPG . . . Z 3 24.898 -17.245 28.639 1 47.87 ? C7 MPG 309 B 1 HETATM 7 C C8 MPG . . . Z 3 25.632 -18.559 28.381 1 53.32 ? C8 MPG 309 B 1 HETATM 8 C C9 MPG . . . Z 3 26.237 -18.506 27.003 1 44.53 ? C9 MPG 309 B 1 HETATM 9 C C10 MPG . . . Z 3 25.524 -17.943 26.034 1 46.01 ? C10 MPG 309 B 1 HETATM 10 C C11 MPG . . . Z 3 26.054 -17.831 24.633 1 55.36 ? C11 MPG 309 B 1 HETATM 11 C C12 MPG . . . Z 3 25.849 -16.399 24.139 1 53.39 ? C12 MPG 309 B 1 HETATM 12 C C13 MPG . . . Z 3 26.563 -15.377 25.016 1 51.3 ? C13 MPG 309 B 1 HETATM 13 C C14 MPG . . . Z 3 27.936 -15.869 25.459 1 49 ? C14 MPG 309 B 1 HETATM 14 C C15 MPG . . . Z 3 29.06 -14.989 24.927 1 41.11 ? C15 MPG 309 B 1 HETATM 15 C C16 MPG . . . Z 3 30.063 -15.828 24.15 1 40.23 ? C16 MPG 309 B 1 HETATM 16 C C17 MPG . . . Z 3 31.345 -15.056 23.884 1 42.66 ? C17 MPG 309 B 1 HETATM 17 C C18 MPG . . . Z 3 32.287 -15.866 23.02 1 46.63 ? C18 MPG 309 B 1 HETATM 18 O O1 MPG . . . Z 3 25.238 -15.372 36.498 1 45.46 ? O1 MPG 309 B 1 HETATM 19 C C1 MPG . . . Z 3 25.358 -14.625 35.297 1 39.57 ? C1 MPG 309 B 1 HETATM 20 C CXD MPG . . . Z 3 24.124 -15.375 38.737 1 49.77 ? CXD MPG 309 B 1 HETATM 21 O O2 MPG . . . Z 3 25.435 -14.915 39.075 1 67.25 ? O2 MPG 309 B 1 HETATM 22 C C21 MPG . . . Z 3 23.925 -16.79 39.267 1 53.92 ? C21 MPG 309 B 1 HETATM 23 O O3 MPG . . . Z 3 22.795 -16.825 40.141 1 54.37 ? O3 MPG 309 B 1 HETATM 24 C CX3 MPG . . . Z 3 24.007 -15.376 37.248 1 49.16 ? CX3 MPG 309 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #