data_4XY2 # _model_server_result.job_id 7_qzkaWgugjpM5EXCDY6Rw _model_server_result.datetime_utc '2024-10-11 03:19:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xy2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 4XY2 # _exptl.entry_id 4XY2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XY2 _cell.length_a 50.447 _cell.length_b 82.114 _cell.length_c 159.15 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XY2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 85 A HIS 529 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 A NE2 HIS 119 A HIS 563 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc3 A OD2 ASP 120 A ASP 564 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc4 A OD1 ASP 120 A ASP 564 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc5 A OD1 ASP 230 A ASP 674 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc6 C ZN ZN . A ZN 801 1_555 H O HOH . A HOH 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc7 C ZN ZN . A ZN 801 1_555 H O HOH . A HOH 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc8 D MG MG . A MG 802 1_555 H O HOH . A HOH 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc9 D MG MG . A MG 802 1_555 H O HOH . A HOH 924 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 D MG MG . A MG 802 1_555 H O HOH . A HOH 926 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc11 D MG MG . A MG 802 1_555 H O HOH . A HOH 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc12 D MG MG . A MG 802 1_555 H O HOH . A HOH 960 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc13 B NE2 HIS 85 B HIS 529 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc14 B NE2 HIS 119 B HIS 563 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc15 B OD2 ASP 120 B ASP 564 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc16 B OD1 ASP 120 B ASP 564 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc17 B OD1 ASP 230 B ASP 674 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc18 F ZN ZN . B ZN 801 1_555 I O HOH . B HOH 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc19 F ZN ZN . B ZN 801 1_555 I O HOH . B HOH 924 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc20 G MG MG . B MG 802 1_555 I O HOH . B HOH 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc21 G MG MG . B MG 802 1_555 I O HOH . B HOH 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc22 G MG MG . B MG 802 1_555 I O HOH . B HOH 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc23 G MG MG . B MG 802 1_555 I O HOH . B HOH 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc24 G MG MG . B MG 802 1_555 I O HOH . B HOH 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XY2 _atom_sites.fract_transf_matrix[1][1] 0.019823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012178 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006283 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 801 1 ZN ZN . D 3 MG A 1 802 2 MG MG . E 4 490 A 1 803 1 490 LIG . F 2 ZN B 1 801 1 ZN ZN . G 3 MG B 1 802 2 MG MG . H 5 HOH A 1 901 319 HOH HOH . H 5 HOH A 2 902 258 HOH HOH . H 5 HOH A 3 903 279 HOH HOH . H 5 HOH A 4 904 403 HOH HOH . H 5 HOH A 5 905 344 HOH HOH . H 5 HOH A 6 906 276 HOH HOH . H 5 HOH A 7 907 321 HOH HOH . H 5 HOH A 8 908 395 HOH HOH . H 5 HOH A 9 909 278 HOH HOH . H 5 HOH A 10 910 309 HOH HOH . H 5 HOH A 11 911 315 HOH HOH . H 5 HOH A 12 912 304 HOH HOH . H 5 HOH A 13 913 331 HOH HOH . H 5 HOH A 14 914 396 HOH HOH . H 5 HOH A 15 915 342 HOH HOH . H 5 HOH A 16 916 372 HOH HOH . H 5 HOH A 17 917 400 HOH HOH . H 5 HOH A 18 918 433 HOH HOH . H 5 HOH A 19 919 272 HOH HOH . H 5 HOH A 20 920 402 HOH HOH . H 5 HOH A 21 921 23 HOH HOH . H 5 HOH A 22 922 35 HOH HOH . H 5 HOH A 23 923 45 HOH HOH . H 5 HOH A 24 924 66 HOH HOH . H 5 HOH A 25 925 73 HOH HOH . H 5 HOH A 26 926 140 HOH HOH . H 5 HOH A 27 927 155 HOH HOH . H 5 HOH A 28 928 202 HOH HOH . H 5 HOH A 29 929 223 HOH HOH . H 5 HOH A 30 930 224 HOH HOH . H 5 HOH A 31 931 227 HOH HOH . H 5 HOH A 32 932 228 HOH HOH . H 5 HOH A 33 933 229 HOH HOH . H 5 HOH A 34 934 235 HOH HOH . H 5 HOH A 35 935 237 HOH HOH . H 5 HOH A 36 936 243 HOH HOH . H 5 HOH A 37 937 244 HOH HOH . H 5 HOH A 38 938 249 HOH HOH . H 5 HOH A 39 939 250 HOH HOH . H 5 HOH A 40 940 251 HOH HOH . H 5 HOH A 41 941 262 HOH HOH . H 5 HOH A 42 942 265 HOH HOH . H 5 HOH A 43 943 266 HOH HOH . H 5 HOH A 44 944 270 HOH HOH . H 5 HOH A 45 945 273 HOH HOH . H 5 HOH A 46 946 277 HOH HOH . H 5 HOH A 47 947 281 HOH HOH . H 5 HOH A 48 948 288 HOH HOH . H 5 HOH A 49 949 293 HOH HOH . H 5 HOH A 50 950 296 HOH HOH . H 5 HOH A 51 951 299 HOH HOH . H 5 HOH A 52 952 301 HOH HOH . H 5 HOH A 53 953 303 HOH HOH . H 5 HOH A 54 954 305 HOH HOH . H 5 HOH A 55 955 307 HOH HOH . H 5 HOH A 56 956 308 HOH HOH . H 5 HOH A 57 957 311 HOH HOH . H 5 HOH A 58 958 312 HOH HOH . H 5 HOH A 59 959 318 HOH HOH . H 5 HOH A 60 960 320 HOH HOH . H 5 HOH A 61 961 322 HOH HOH . H 5 HOH A 62 962 325 HOH HOH . H 5 HOH A 63 963 326 HOH HOH . H 5 HOH A 64 964 328 HOH HOH . H 5 HOH A 65 965 329 HOH HOH . H 5 HOH A 66 966 330 HOH HOH . H 5 HOH A 67 967 332 HOH HOH . H 5 HOH A 68 968 335 HOH HOH . H 5 HOH A 69 969 337 HOH HOH . H 5 HOH A 70 970 339 HOH HOH . H 5 HOH A 71 971 340 HOH HOH . H 5 HOH A 72 972 343 HOH HOH . H 5 HOH A 73 973 346 HOH HOH . H 5 HOH A 74 974 347 HOH HOH . H 5 HOH A 75 975 354 HOH HOH . H 5 HOH A 76 976 357 HOH HOH . H 5 HOH A 77 977 361 HOH HOH . H 5 HOH A 78 978 362 HOH HOH . H 5 HOH A 79 979 364 HOH HOH . H 5 HOH A 80 980 365 HOH HOH . H 5 HOH A 81 981 367 HOH HOH . H 5 HOH A 82 982 368 HOH HOH . H 5 HOH A 83 983 369 HOH HOH . H 5 HOH A 84 984 373 HOH HOH . H 5 HOH A 85 985 377 HOH HOH . H 5 HOH A 86 986 378 HOH HOH . H 5 HOH A 87 987 380 HOH HOH . H 5 HOH A 88 988 382 HOH HOH . H 5 HOH A 89 989 383 HOH HOH . H 5 HOH A 90 990 385 HOH HOH . H 5 HOH A 91 991 386 HOH HOH . H 5 HOH A 92 992 387 HOH HOH . H 5 HOH A 93 993 388 HOH HOH . H 5 HOH A 94 994 389 HOH HOH . H 5 HOH A 95 995 390 HOH HOH . H 5 HOH A 96 996 391 HOH HOH . H 5 HOH A 97 997 392 HOH HOH . H 5 HOH A 98 998 398 HOH HOH . H 5 HOH A 99 999 406 HOH HOH . H 5 HOH A 100 1000 407 HOH HOH . H 5 HOH A 101 1001 410 HOH HOH . H 5 HOH A 102 1002 414 HOH HOH . H 5 HOH A 103 1003 415 HOH HOH . H 5 HOH A 104 1004 418 HOH HOH . H 5 HOH A 105 1005 423 HOH HOH . H 5 HOH A 106 1006 431 HOH HOH . H 5 HOH A 107 1007 432 HOH HOH . H 5 HOH A 108 1008 434 HOH HOH . H 5 HOH A 109 1009 435 HOH HOH . I 5 HOH B 1 901 323 HOH HOH . I 5 HOH B 2 902 379 HOH HOH . I 5 HOH B 3 903 314 HOH HOH . I 5 HOH B 4 904 338 HOH HOH . I 5 HOH B 5 905 405 HOH HOH . I 5 HOH B 6 906 444 HOH HOH . I 5 HOH B 7 907 264 HOH HOH . I 5 HOH B 8 908 285 HOH HOH . I 5 HOH B 9 909 282 HOH HOH . I 5 HOH B 10 910 411 HOH HOH . I 5 HOH B 11 911 349 HOH HOH . I 5 HOH B 12 912 248 HOH HOH . I 5 HOH B 13 913 316 HOH HOH . I 5 HOH B 14 914 222 HOH HOH . I 5 HOH B 15 915 241 HOH HOH . I 5 HOH B 16 916 426 HOH HOH . I 5 HOH B 17 917 20 HOH HOH . I 5 HOH B 18 918 60 HOH HOH . I 5 HOH B 19 919 75 HOH HOH . I 5 HOH B 20 920 139 HOH HOH . I 5 HOH B 21 921 143 HOH HOH . I 5 HOH B 22 922 164 HOH HOH . I 5 HOH B 23 923 175 HOH HOH . I 5 HOH B 24 924 221 HOH HOH . I 5 HOH B 25 925 225 HOH HOH . I 5 HOH B 26 926 226 HOH HOH . I 5 HOH B 27 927 230 HOH HOH . I 5 HOH B 28 928 231 HOH HOH . I 5 HOH B 29 929 232 HOH HOH . I 5 HOH B 30 930 233 HOH HOH . I 5 HOH B 31 931 234 HOH HOH . I 5 HOH B 32 932 236 HOH HOH . I 5 HOH B 33 933 238 HOH HOH . I 5 HOH B 34 934 239 HOH HOH . I 5 HOH B 35 935 240 HOH HOH . I 5 HOH B 36 936 242 HOH HOH . I 5 HOH B 37 937 245 HOH HOH . I 5 HOH B 38 938 246 HOH HOH . I 5 HOH B 39 939 247 HOH HOH . I 5 HOH B 40 940 252 HOH HOH . I 5 HOH B 41 941 253 HOH HOH . I 5 HOH B 42 942 254 HOH HOH . I 5 HOH B 43 943 255 HOH HOH . I 5 HOH B 44 944 256 HOH HOH . I 5 HOH B 45 945 257 HOH HOH . I 5 HOH B 46 946 259 HOH HOH . I 5 HOH B 47 947 260 HOH HOH . I 5 HOH B 48 948 261 HOH HOH . I 5 HOH B 49 949 263 HOH HOH . I 5 HOH B 50 950 267 HOH HOH . I 5 HOH B 51 951 268 HOH HOH . I 5 HOH B 52 952 269 HOH HOH . I 5 HOH B 53 953 271 HOH HOH . I 5 HOH B 54 954 275 HOH HOH . I 5 HOH B 55 955 283 HOH HOH . I 5 HOH B 56 956 284 HOH HOH . I 5 HOH B 57 957 287 HOH HOH . I 5 HOH B 58 958 289 HOH HOH . I 5 HOH B 59 959 290 HOH HOH . I 5 HOH B 60 960 291 HOH HOH . I 5 HOH B 61 961 292 HOH HOH . I 5 HOH B 62 962 294 HOH HOH . I 5 HOH B 63 963 295 HOH HOH . I 5 HOH B 64 964 298 HOH HOH . I 5 HOH B 65 965 300 HOH HOH . I 5 HOH B 66 966 302 HOH HOH . I 5 HOH B 67 967 306 HOH HOH . I 5 HOH B 68 968 310 HOH HOH . I 5 HOH B 69 969 313 HOH HOH . I 5 HOH B 70 970 317 HOH HOH . I 5 HOH B 71 971 324 HOH HOH . I 5 HOH B 72 972 327 HOH HOH . I 5 HOH B 73 973 333 HOH HOH . I 5 HOH B 74 974 334 HOH HOH . I 5 HOH B 75 975 336 HOH HOH . I 5 HOH B 76 976 341 HOH HOH . I 5 HOH B 77 977 345 HOH HOH . I 5 HOH B 78 978 348 HOH HOH . I 5 HOH B 79 979 350 HOH HOH . I 5 HOH B 80 980 351 HOH HOH . I 5 HOH B 81 981 352 HOH HOH . I 5 HOH B 82 982 353 HOH HOH . I 5 HOH B 83 983 355 HOH HOH . I 5 HOH B 84 984 356 HOH HOH . I 5 HOH B 85 985 358 HOH HOH . I 5 HOH B 86 986 359 HOH HOH . I 5 HOH B 87 987 363 HOH HOH . I 5 HOH B 88 988 370 HOH HOH . I 5 HOH B 89 989 371 HOH HOH . I 5 HOH B 90 990 374 HOH HOH . I 5 HOH B 91 991 375 HOH HOH . I 5 HOH B 92 992 376 HOH HOH . I 5 HOH B 93 993 384 HOH HOH . I 5 HOH B 94 994 393 HOH HOH . I 5 HOH B 95 995 394 HOH HOH . I 5 HOH B 96 996 397 HOH HOH . I 5 HOH B 97 997 401 HOH HOH . I 5 HOH B 98 998 408 HOH HOH . I 5 HOH B 99 999 409 HOH HOH . I 5 HOH B 100 1000 416 HOH HOH . I 5 HOH B 101 1001 417 HOH HOH . I 5 HOH B 102 1002 419 HOH HOH . I 5 HOH B 103 1003 420 HOH HOH . I 5 HOH B 104 1004 421 HOH HOH . I 5 HOH B 105 1005 422 HOH HOH . I 5 HOH B 106 1006 424 HOH HOH . I 5 HOH B 107 1007 425 HOH HOH . I 5 HOH B 108 1008 427 HOH HOH . I 5 HOH B 109 1009 428 HOH HOH . I 5 HOH B 110 1010 429 HOH HOH . I 5 HOH B 111 1011 430 HOH HOH . I 5 HOH B 112 1012 436 HOH HOH . I 5 HOH B 113 1013 437 HOH HOH . I 5 HOH B 114 1014 438 HOH HOH . I 5 HOH B 115 1015 439 HOH HOH . I 5 HOH B 116 1016 440 HOH HOH . I 5 HOH B 117 1017 441 HOH HOH . I 5 HOH B 118 1018 442 HOH HOH . I 5 HOH B 119 1019 443 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 8.429 _atom_site.Cartn_y -4.716 _atom_site.Cartn_z 59.234 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 802 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #