data_4XY9 # _model_server_result.job_id 53PSVQhyWo3drUVIvc1m-Q _model_server_result.datetime_utc '2024-12-23 16:18:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4XY9 # _exptl.entry_id 4XY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XY9 _cell.length_a 36.915 _cell.length_b 44.229 _cell.length_c 79.584 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 114 n n C1 C2 EDO sing 115 n n C1 H11 EDO sing 116 n n C1 H12 EDO sing 117 n n O1 HO1 EDO sing 118 n n C2 O2 EDO sing 119 n n C2 H21 EDO sing 120 n n C2 H22 EDO sing 121 n n O2 HO2 EDO sing 122 n n # _atom_sites.entry_id 4XY9 _atom_sites.fract_transf_matrix[1][1] 0.027089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 3 43U A 1 202 1 43U DRG . D 4 HOH A 1 301 93 HOH HOH . D 4 HOH A 2 302 27 HOH HOH . D 4 HOH A 3 303 64 HOH HOH . D 4 HOH A 4 304 52 HOH HOH . D 4 HOH A 5 305 111 HOH HOH . D 4 HOH A 6 306 99 HOH HOH . D 4 HOH A 7 307 20 HOH HOH . D 4 HOH A 8 308 43 HOH HOH . D 4 HOH A 9 309 50 HOH HOH . D 4 HOH A 10 310 119 HOH HOH . D 4 HOH A 11 311 85 HOH HOH . D 4 HOH A 12 312 8 HOH HOH . D 4 HOH A 13 313 42 HOH HOH . D 4 HOH A 14 314 34 HOH HOH . D 4 HOH A 15 315 53 HOH HOH . D 4 HOH A 16 316 106 HOH HOH . D 4 HOH A 17 317 88 HOH HOH . D 4 HOH A 18 318 62 HOH HOH . D 4 HOH A 19 319 35 HOH HOH . D 4 HOH A 20 320 110 HOH HOH . D 4 HOH A 21 321 19 HOH HOH . D 4 HOH A 22 322 87 HOH HOH . D 4 HOH A 23 323 32 HOH HOH . D 4 HOH A 24 324 83 HOH HOH . D 4 HOH A 25 325 60 HOH HOH . D 4 HOH A 26 326 57 HOH HOH . D 4 HOH A 27 327 74 HOH HOH . D 4 HOH A 28 328 46 HOH HOH . D 4 HOH A 29 329 18 HOH HOH . D 4 HOH A 30 330 86 HOH HOH . D 4 HOH A 31 331 82 HOH HOH . D 4 HOH A 32 332 10 HOH HOH . D 4 HOH A 33 333 118 HOH HOH . D 4 HOH A 34 334 90 HOH HOH . D 4 HOH A 35 335 33 HOH HOH . D 4 HOH A 36 336 81 HOH HOH . D 4 HOH A 37 337 105 HOH HOH . D 4 HOH A 38 338 78 HOH HOH . D 4 HOH A 39 339 37 HOH HOH . D 4 HOH A 40 340 51 HOH HOH . D 4 HOH A 41 341 75 HOH HOH . D 4 HOH A 42 342 28 HOH HOH . D 4 HOH A 43 343 49 HOH HOH . D 4 HOH A 44 344 21 HOH HOH . D 4 HOH A 45 345 72 HOH HOH . D 4 HOH A 46 346 63 HOH HOH . D 4 HOH A 47 347 112 HOH HOH . D 4 HOH A 48 348 92 HOH HOH . D 4 HOH A 49 349 47 HOH HOH . D 4 HOH A 50 350 120 HOH HOH . D 4 HOH A 51 351 61 HOH HOH . D 4 HOH A 52 352 114 HOH HOH . D 4 HOH A 53 353 65 HOH HOH . D 4 HOH A 54 354 115 HOH HOH . D 4 HOH A 55 355 79 HOH HOH . D 4 HOH A 56 356 84 HOH HOH . D 4 HOH A 57 357 96 HOH HOH . D 4 HOH A 58 358 104 HOH HOH . D 4 HOH A 59 359 67 HOH HOH . D 4 HOH A 60 360 102 HOH HOH . D 4 HOH A 61 361 107 HOH HOH . D 4 HOH A 62 362 1 HOH HOH . D 4 HOH A 63 363 2 HOH HOH . D 4 HOH A 64 364 3 HOH HOH . D 4 HOH A 65 365 4 HOH HOH . D 4 HOH A 66 366 5 HOH HOH . D 4 HOH A 67 367 6 HOH HOH . D 4 HOH A 68 368 7 HOH HOH . D 4 HOH A 69 369 9 HOH HOH . D 4 HOH A 70 370 11 HOH HOH . D 4 HOH A 71 371 12 HOH HOH . D 4 HOH A 72 372 13 HOH HOH . D 4 HOH A 73 373 14 HOH HOH . D 4 HOH A 74 374 15 HOH HOH . D 4 HOH A 75 375 16 HOH HOH . D 4 HOH A 76 376 17 HOH HOH . D 4 HOH A 77 377 22 HOH HOH . D 4 HOH A 78 378 23 HOH HOH . D 4 HOH A 79 379 24 HOH HOH . D 4 HOH A 80 380 25 HOH HOH . D 4 HOH A 81 381 26 HOH HOH . D 4 HOH A 82 382 29 HOH HOH . D 4 HOH A 83 383 30 HOH HOH . D 4 HOH A 84 384 31 HOH HOH . D 4 HOH A 85 385 36 HOH HOH . D 4 HOH A 86 386 38 HOH HOH . D 4 HOH A 87 387 39 HOH HOH . D 4 HOH A 88 388 40 HOH HOH . D 4 HOH A 89 389 41 HOH HOH . D 4 HOH A 90 390 44 HOH HOH . D 4 HOH A 91 391 45 HOH HOH . D 4 HOH A 92 392 48 HOH HOH . D 4 HOH A 93 393 54 HOH HOH . D 4 HOH A 94 394 55 HOH HOH . D 4 HOH A 95 395 56 HOH HOH . D 4 HOH A 96 396 58 HOH HOH . D 4 HOH A 97 397 59 HOH HOH . D 4 HOH A 98 398 66 HOH HOH . D 4 HOH A 99 399 68 HOH HOH . D 4 HOH A 100 400 69 HOH HOH . D 4 HOH A 101 401 70 HOH HOH . D 4 HOH A 102 402 71 HOH HOH . D 4 HOH A 103 403 73 HOH HOH . D 4 HOH A 104 404 76 HOH HOH . D 4 HOH A 105 405 77 HOH HOH . D 4 HOH A 106 406 80 HOH HOH . D 4 HOH A 107 407 89 HOH HOH . D 4 HOH A 108 408 91 HOH HOH . D 4 HOH A 109 409 94 HOH HOH . D 4 HOH A 110 410 95 HOH HOH . D 4 HOH A 111 411 97 HOH HOH . D 4 HOH A 112 412 98 HOH HOH . D 4 HOH A 113 413 100 HOH HOH . D 4 HOH A 114 414 101 HOH HOH . D 4 HOH A 115 415 103 HOH HOH . D 4 HOH A 116 416 108 HOH HOH . D 4 HOH A 117 417 109 HOH HOH . D 4 HOH A 118 418 113 HOH HOH . D 4 HOH A 119 419 116 HOH HOH . D 4 HOH A 120 420 117 HOH HOH . D 4 HOH A 121 421 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 41.589 20.299 7.076 1 23.38 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . B 2 40.425 19.559 7.513 1 15.79 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . B 2 42.567 19.42 6.314 1 19.46 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . B 2 42.861 18.248 7.094 1 19.12 ? O2 EDO 201 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #