data_4XYC # _model_server_result.job_id XabLN3LaTJj6V9XThAzkJQ _model_server_result.datetime_utc '2025-01-03 02:56:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xyc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MA","auth_seq_id":900}' # _entry.id 4XYC # _exptl.entry_id 4XYC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.31 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-phenyl-4H-imidazo[1,2-a]indeno[1,2-e]pyrazin-4-one _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XYC _cell.length_a 260.112 _cell.length_b 273.497 _cell.length_c 207.634 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XYC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 author_and_software_defined_assembly 1 PISA dodecameric 12 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P,Q,R,Y,Z,AA,BA,CA,DA,KA,LA,MA,NA,OA,PA 1 1 G,H,I,J,K,L,S,T,U,V,W,X,EA,FA,GA,HA,IA,JA,QA,RA,SA,TA,UA,VA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N ? 2 OA N N ? 2 PA N N ? 2 QA N N ? 2 RA N N ? 2 SA N N ? 2 TA N N ? 2 UA N N ? 2 VA N N # _chem_comp.formula 'C19 H11 N3 O' _chem_comp.formula_weight 297.31 _chem_comp.id 2K9 _chem_comp.mon_nstd_flag . _chem_comp.name 9-phenyl-4H-imidazo[1,2-a]indeno[1,2-e]pyrazin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C9 2K9 doub 1 n n N3 C10 2K9 sing 2 n y N3 C5 2K9 doub 3 n y C9 C5 2K9 sing 4 n n C9 N2 2K9 sing 5 n n C10 C6 2K9 doub 6 n y C5 N1 2K9 sing 7 n y N2 C2 2K9 doub 8 n n N1 C6 2K9 sing 9 n y N1 C1 2K9 sing 10 n n C2 C1 2K9 sing 11 n n C2 C4 2K9 sing 12 n n C1 C3 2K9 doub 13 n n C4 C8 2K9 doub 14 n y C4 C7 2K9 sing 15 n y C8 C12 2K9 sing 16 n y C3 C7 2K9 sing 17 n n C7 C11 2K9 doub 18 n y C12 C14 2K9 doub 19 n y C11 C14 2K9 sing 20 n y C11 C13 2K9 sing 21 n n C13 C15 2K9 doub 22 n y C13 C16 2K9 sing 23 n y C15 C17 2K9 sing 24 n y C16 C18 2K9 doub 25 n y C17 C19 2K9 doub 26 n y C18 C19 2K9 sing 27 n y C10 H1 2K9 sing 28 n n C6 H2 2K9 sing 29 n n C8 H3 2K9 sing 30 n n C12 H4 2K9 sing 31 n n C14 H5 2K9 sing 32 n n C3 H6 2K9 sing 33 n n C16 H7 2K9 sing 34 n n C18 H9 2K9 sing 35 n n C19 H10 2K9 sing 36 n n C17 H11 2K9 sing 37 n n C15 H13 2K9 sing 38 n n # _atom_sites.entry_id 4XYC _atom_sites.fract_transf_matrix[1][1] 0.003844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 2 2K9 A 1 900 900 2K9 2K9 . Z 2 2K9 B 1 900 900 2K9 2K9 . AA 2 2K9 C 1 900 900 2K9 2K9 . BA 2 2K9 D 1 900 900 2K9 2K9 . CA 2 2K9 E 1 900 900 2K9 2K9 . DA 2 2K9 F 1 900 900 2K9 2K9 . EA 2 2K9 G 1 900 900 2K9 2K9 . FA 2 2K9 H 1 900 900 2K9 2K9 . GA 2 2K9 I 1 900 900 2K9 2K9 . HA 2 2K9 J 1 900 900 2K9 2K9 . IA 2 2K9 K 1 900 900 2K9 2K9 . JA 2 2K9 L 1 900 900 2K9 2K9 . KA 2 2K9 M 1 900 900 2K9 2K9 . LA 2 2K9 N 1 900 900 2K9 2K9 . MA 2 2K9 O 1 900 900 2K9 2K9 . NA 2 2K9 P 1 900 900 2K9 2K9 . OA 2 2K9 Q 1 900 900 2K9 2K9 . PA 2 2K9 R 1 900 900 2K9 2K9 . QA 2 2K9 S 1 900 900 2K9 2K9 . RA 2 2K9 T 1 900 900 2K9 2K9 . SA 2 2K9 U 1 900 900 2K9 2K9 . TA 2 2K9 V 1 900 900 2K9 2K9 . UA 2 2K9 W 1 900 900 2K9 2K9 . VA 2 2K9 X 1 900 900 2K9 2K9 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2K9 . . . MA 2 82.672 -15.201 105.902 1 88.5 ? O1 2K9 900 O 1 HETATM 2 C C9 2K9 . . . MA 2 82.341 -15.014 104.714 1 87.75 ? C9 2K9 900 O 1 HETATM 3 C C5 2K9 . . . MA 2 81.179 -14.115 104.428 1 87.72 ? C5 2K9 900 O 1 HETATM 4 N N3 2K9 . . . MA 2 80.331 -13.398 105.202 1 87.78 ? N3 2K9 900 O 1 HETATM 5 C C10 2K9 . . . MA 2 79.443 -12.756 104.389 1 88.01 ? C10 2K9 900 O 1 HETATM 6 C C6 2K9 . . . MA 2 79.735 -13.07 103.068 1 88.25 ? C6 2K9 900 O 1 HETATM 7 N N1 2K9 . . . MA 2 80.785 -13.889 103.173 1 87.81 ? N1 2K9 900 O 1 HETATM 8 C C1 2K9 . . . MA 2 81.444 -14.475 102.153 1 86.54 ? C1 2K9 900 O 1 HETATM 9 N N2 2K9 . . . MA 2 83.014 -15.603 103.701 1 87.07 ? N2 2K9 900 O 1 HETATM 10 C C2 2K9 . . . MA 2 82.591 -15.352 102.455 1 86.19 ? C2 2K9 900 O 1 HETATM 11 C C4 2K9 . . . MA 2 83.073 -15.803 101.254 1 85.57 ? C4 2K9 900 O 1 HETATM 12 C C8 2K9 . . . MA 2 84.148 -16.663 101.042 1 85.34 ? C8 2K9 900 O 1 HETATM 13 C C12 2K9 . . . MA 2 84.461 -16.984 99.721 1 85.09 ? C12 2K9 900 O 1 HETATM 14 C C14 2K9 . . . MA 2 83.701 -16.449 98.669 1 85.27 ? C14 2K9 900 O 1 HETATM 15 C C11 2K9 . . . MA 2 82.609 -15.588 98.894 1 85.06 ? C11 2K9 900 O 1 HETATM 16 C C7 2K9 . . . MA 2 82.304 -15.26 100.224 1 85.31 ? C7 2K9 900 O 1 HETATM 17 C C3 2K9 . . . MA 2 81.22 -14.385 100.706 1 85.45 ? C3 2K9 900 O 1 HETATM 18 C C13 2K9 . . . MA 2 81.86 -15.035 97.719 1 84.24 ? C13 2K9 900 O 1 HETATM 19 C C16 2K9 . . . MA 2 82.578 -14.274 96.787 1 83.3 ? C16 2K9 900 O 1 HETATM 20 C C18 2K9 . . . MA 2 81.946 -13.723 95.674 1 82.85 ? C18 2K9 900 O 1 HETATM 21 C C19 2K9 . . . MA 2 80.58 -13.92 95.485 1 82.75 ? C19 2K9 900 O 1 HETATM 22 C C17 2K9 . . . MA 2 79.856 -14.673 96.411 1 83.47 ? C17 2K9 900 O 1 HETATM 23 C C15 2K9 . . . MA 2 80.489 -15.232 97.527 1 84.1 ? C15 2K9 900 O 1 # _model_server_stats.io_time_ms 110 _model_server_stats.parse_time_ms 51 _model_server_stats.create_model_time_ms 566 _model_server_stats.query_time_ms 1360 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 23 #