data_4XYC # _model_server_result.job_id HYA2vRtwYhULvdT6yKzjZQ _model_server_result.datetime_utc '2025-01-18 07:29:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xyc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"VA","auth_seq_id":900}' # _entry.id 4XYC # _exptl.entry_id 4XYC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.31 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-phenyl-4H-imidazo[1,2-a]indeno[1,2-e]pyrazin-4-one _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XYC _cell.length_a 260.112 _cell.length_b 273.497 _cell.length_c 207.634 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XYC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 author_and_software_defined_assembly 1 PISA dodecameric 12 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P,Q,R,Y,Z,AA,BA,CA,DA,KA,LA,MA,NA,OA,PA 1 1 G,H,I,J,K,L,S,T,U,V,W,X,EA,FA,GA,HA,IA,JA,QA,RA,SA,TA,UA,VA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N ? 2 OA N N ? 2 PA N N ? 2 QA N N ? 2 RA N N ? 2 SA N N ? 2 TA N N ? 2 UA N N ? 2 VA N N # _chem_comp.formula 'C19 H11 N3 O' _chem_comp.formula_weight 297.31 _chem_comp.id 2K9 _chem_comp.mon_nstd_flag . _chem_comp.name 9-phenyl-4H-imidazo[1,2-a]indeno[1,2-e]pyrazin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C9 2K9 doub 1 n n N3 C10 2K9 sing 2 n y N3 C5 2K9 doub 3 n y C9 C5 2K9 sing 4 n n C9 N2 2K9 sing 5 n n C10 C6 2K9 doub 6 n y C5 N1 2K9 sing 7 n y N2 C2 2K9 doub 8 n n N1 C6 2K9 sing 9 n y N1 C1 2K9 sing 10 n n C2 C1 2K9 sing 11 n n C2 C4 2K9 sing 12 n n C1 C3 2K9 doub 13 n n C4 C8 2K9 doub 14 n y C4 C7 2K9 sing 15 n y C8 C12 2K9 sing 16 n y C3 C7 2K9 sing 17 n n C7 C11 2K9 doub 18 n y C12 C14 2K9 doub 19 n y C11 C14 2K9 sing 20 n y C11 C13 2K9 sing 21 n n C13 C15 2K9 doub 22 n y C13 C16 2K9 sing 23 n y C15 C17 2K9 sing 24 n y C16 C18 2K9 doub 25 n y C17 C19 2K9 doub 26 n y C18 C19 2K9 sing 27 n y C10 H1 2K9 sing 28 n n C6 H2 2K9 sing 29 n n C8 H3 2K9 sing 30 n n C12 H4 2K9 sing 31 n n C14 H5 2K9 sing 32 n n C3 H6 2K9 sing 33 n n C16 H7 2K9 sing 34 n n C18 H9 2K9 sing 35 n n C19 H10 2K9 sing 36 n n C17 H11 2K9 sing 37 n n C15 H13 2K9 sing 38 n n # _atom_sites.entry_id 4XYC _atom_sites.fract_transf_matrix[1][1] 0.003844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 2 2K9 A 1 900 900 2K9 2K9 . Z 2 2K9 B 1 900 900 2K9 2K9 . AA 2 2K9 C 1 900 900 2K9 2K9 . BA 2 2K9 D 1 900 900 2K9 2K9 . CA 2 2K9 E 1 900 900 2K9 2K9 . DA 2 2K9 F 1 900 900 2K9 2K9 . EA 2 2K9 G 1 900 900 2K9 2K9 . FA 2 2K9 H 1 900 900 2K9 2K9 . GA 2 2K9 I 1 900 900 2K9 2K9 . HA 2 2K9 J 1 900 900 2K9 2K9 . IA 2 2K9 K 1 900 900 2K9 2K9 . JA 2 2K9 L 1 900 900 2K9 2K9 . KA 2 2K9 M 1 900 900 2K9 2K9 . LA 2 2K9 N 1 900 900 2K9 2K9 . MA 2 2K9 O 1 900 900 2K9 2K9 . NA 2 2K9 P 1 900 900 2K9 2K9 . OA 2 2K9 Q 1 900 900 2K9 2K9 . PA 2 2K9 R 1 900 900 2K9 2K9 . QA 2 2K9 S 1 900 900 2K9 2K9 . RA 2 2K9 T 1 900 900 2K9 2K9 . SA 2 2K9 U 1 900 900 2K9 2K9 . TA 2 2K9 V 1 900 900 2K9 2K9 . UA 2 2K9 W 1 900 900 2K9 2K9 . VA 2 2K9 X 1 900 900 2K9 2K9 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2K9 . . . VA 2 158.682 115.387 193.772 1 61.59 ? O1 2K9 900 X 1 HETATM 2 C C9 2K9 . . . VA 2 158.683 114.963 192.588 1 61.94 ? C9 2K9 900 X 1 HETATM 3 C C5 2K9 . . . VA 2 159.717 113.965 192.123 1 61.41 ? C5 2K9 900 X 1 HETATM 4 N N3 2K9 . . . VA 2 160.763 113.335 192.704 1 61.04 ? N3 2K9 900 X 1 HETATM 5 C C10 2K9 . . . VA 2 161.362 112.525 191.787 1 60.44 ? C10 2K9 900 X 1 HETATM 6 C C6 2K9 . . . VA 2 160.687 112.635 190.59 1 60.56 ? C6 2K9 900 X 1 HETATM 7 N N1 2K9 . . . VA 2 159.727 113.509 190.871 1 61.15 ? N1 2K9 900 X 1 HETATM 8 C C1 2K9 . . . VA 2 158.803 113.951 190.005 1 61.77 ? C1 2K9 900 X 1 HETATM 9 N N2 2K9 . . . VA 2 157.749 115.404 191.716 1 62.34 ? N2 2K9 900 X 1 HETATM 10 C C2 2K9 . . . VA 2 157.783 114.925 190.454 1 62.24 ? C2 2K9 900 X 1 HETATM 11 C C4 2K9 . . . VA 2 156.967 115.181 189.355 1 61.97 ? C4 2K9 900 X 1 HETATM 12 C C8 2K9 . . . VA 2 155.86 116.032 189.262 1 61.17 ? C8 2K9 900 X 1 HETATM 13 C C12 2K9 . . . VA 2 155.204 116.111 188.034 1 60.46 ? C12 2K9 900 X 1 HETATM 14 C C14 2K9 . . . VA 2 155.659 115.363 186.94 1 60.89 ? C14 2K9 900 X 1 HETATM 15 C C11 2K9 . . . VA 2 156.775 114.515 187.033 1 61.15 ? C11 2K9 900 X 1 HETATM 16 C C7 2K9 . . . VA 2 157.424 114.428 188.27 1 61.69 ? C7 2K9 900 X 1 HETATM 17 C C3 2K9 . . . VA 2 158.606 113.605 188.593 1 61.79 ? C3 2K9 900 X 1 HETATM 18 C C13 2K9 . . . VA 2 157.222 113.709 185.854 1 60.64 ? C13 2K9 900 X 1 HETATM 19 C C16 2K9 . . . VA 2 156.278 112.957 185.148 1 60.59 ? C16 2K9 900 X 1 HETATM 20 C C18 2K9 . . . VA 2 156.648 112.181 184.052 1 60.22 ? C18 2K9 900 X 1 HETATM 21 C C19 2K9 . . . VA 2 157.98 112.145 183.661 1 60.14 ? C19 2K9 900 X 1 HETATM 22 C C17 2K9 . . . VA 2 158.928 112.886 184.369 1 60.67 ? C17 2K9 900 X 1 HETATM 23 C C15 2K9 . . . VA 2 158.557 113.67 185.46 1 60.41 ? C15 2K9 900 X 1 # _model_server_stats.io_time_ms 165 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 80 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 23 #