data_4XYP # _model_server_result.job_id JSWo_fJps2zi6y7H4fgixA _model_server_result.datetime_utc '2024-11-24 19:42:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xyp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4XYP # _exptl.entry_id 4XYP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.399 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,7-BIS(DIMETHYLAMINO)PHENOTHIAZIN-5-IUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XYP _cell.length_a 42.874 _cell.length_b 42.874 _cell.length_c 232.245 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 21.437 -37.129973 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 42.874 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H18 N3 S 1' _chem_comp.formula_weight 284.399 _chem_comp.id MBT _chem_comp.mon_nstd_flag . _chem_comp.name 3,7-BIS(DIMETHYLAMINO)PHENOTHIAZIN-5-IUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'METHYLENE BLUE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C14 MBT sing 184 n y C1 N6 MBT doub 185 n y C1 C2 MBT sing 186 n y C2 S3 MBT doub 187 n y C2 C11 MBT sing 188 n y S3 C4 MBT sing 189 n y C4 C7 MBT doub 190 n y C4 C5 MBT sing 191 n y C5 N6 MBT sing 192 n y C5 C10 MBT doub 193 n y C7 C8 MBT sing 194 n y C7 H7 MBT sing 195 n n C8 C9 MBT doub 196 n y C8 N15 MBT sing 197 n n C9 C10 MBT sing 198 n y C9 H9 MBT sing 199 n n C10 H10 MBT sing 200 n n C11 C12 MBT doub 201 n y C11 H11 MBT sing 202 n n C12 N18 MBT sing 203 n n C12 C13 MBT sing 204 n y C13 C14 MBT doub 205 n y C13 H13 MBT sing 206 n n C14 H14 MBT sing 207 n n N15 C16 MBT sing 208 n n N15 C17 MBT sing 209 n n C16 H161 MBT sing 210 n n C16 H162 MBT sing 211 n n C16 H163 MBT sing 212 n n C17 H171 MBT sing 213 n n C17 H172 MBT sing 214 n n C17 H173 MBT sing 215 n n N18 C19 MBT sing 216 n n N18 C20 MBT sing 217 n n C19 H191 MBT sing 218 n n C19 H192 MBT sing 219 n n C19 H193 MBT sing 220 n n C20 H201 MBT sing 221 n n C20 H202 MBT sing 222 n n C20 H203 MBT sing 223 n n # _atom_sites.entry_id 4XYP _atom_sites.fract_transf_matrix[1][1] 0.023324 _atom_sites.fract_transf_matrix[1][2] 0.013466 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MBT A 1 401 1 MBT MBT . C 3 CL A 1 402 2 CL CL . D 3 CL A 1 403 3 CL CL . E 4 HOH A 1 501 1 HOH HOH . E 4 HOH A 2 502 3 HOH HOH . E 4 HOH A 3 503 5 HOH HOH . E 4 HOH A 4 504 6 HOH HOH . E 4 HOH A 5 505 4 HOH HOH . E 4 HOH A 6 506 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MBT . . . B 2 21.766 -14.138 37.037 0.38 33.5 ? C1 MBT 401 A 1 HETATM 2 C C2 MBT . . . B 2 20.753 -15.116 37.238 0.38 38.13 ? C2 MBT 401 A 1 HETATM 3 S S3 MBT . . . B 2 19.1 -14.53 37.375 0.38 46.17 ? S3 MBT 401 A 1 HETATM 4 C C4 MBT . . . B 2 19.035 -12.755 37.299 0.38 33.06 ? C4 MBT 401 A 1 HETATM 5 C C5 MBT . . . B 2 20.271 -12.075 37.096 0.38 34.67 ? C5 MBT 401 A 1 HETATM 6 N N6 MBT . . . B 2 21.571 -12.709 36.964 0.38 35.68 ? N6 MBT 401 A 1 HETATM 7 C C7 MBT . . . B 2 17.81 -12.056 37.424 0.38 37.3 ? C7 MBT 401 A 1 HETATM 8 C C8 MBT . . . B 2 17.812 -10.697 37.337 0.38 38.53 ? C8 MBT 401 A 1 HETATM 9 C C9 MBT . . . B 2 18.989 -10.03 37.142 0.38 39.52 ? C9 MBT 401 A 1 HETATM 10 C C10 MBT . . . B 2 20.214 -10.682 37.015 0.38 34.55 ? C10 MBT 401 A 1 HETATM 11 C C11 MBT . . . B 2 21.063 -16.522 37.298 0.38 38.64 ? C11 MBT 401 A 1 HETATM 12 C C12 MBT . . . B 2 22.355 -16.916 37.148 0.38 36.76 ? C12 MBT 401 A 1 HETATM 13 C C13 MBT . . . B 2 23.349 -15.969 36.959 0.38 38.53 ? C13 MBT 401 A 1 HETATM 14 C C14 MBT . . . B 2 23.09 -14.607 36.898 0.38 33.22 ? C14 MBT 401 A 1 HETATM 15 N N15 MBT . . . B 2 16.538 -9.977 37.484 0.38 35.61 ? N15 MBT 401 A 1 HETATM 16 C C16 MBT . . . B 2 16.525 -8.557 37.544 0.38 35.34 ? C16 MBT 401 A 1 HETATM 17 C C17 MBT . . . B 2 15.321 -10.701 37.632 0.38 38.12 ? C17 MBT 401 A 1 HETATM 18 N N18 MBT . . . B 2 22.672 -18.303 37.211 0.38 39.73 ? N18 MBT 401 A 1 HETATM 19 C C19 MBT . . . B 2 21.64 -19.263 37.555 0.38 35.02 ? C19 MBT 401 A 1 HETATM 20 C C20 MBT . . . B 2 23.96 -18.754 36.978 0.38 37.49 ? C20 MBT 401 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #