data_4XYY
#
_model_server_result.job_id            hALhJ69Y2lea0tjnIYemLQ 
_model_server_result.datetime_utc      '2025-07-16 08:29:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xyy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    4XYY 
#
_exptl.entry_id    4XYY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              60.098 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ETHANE-1,2-DIAMINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XYY 
_cell.length_a            77.232 
_cell.length_b            77.232 
_cell.length_c            37.961 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XYY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
#
_chem_comp.formula           'C2 H8 N2' 
_chem_comp.formula_weight    60.098 
_chem_comp.id                EDN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ETHANE-1,2-DIAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ETHYLENEDIAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NAA CAB EDN sing 92 n n 
CAB CAC EDN sing 93 n n 
CAC NAD EDN sing 94 n n 
NAA HAA1 EDN sing 95 n n 
NAA HAA2 EDN sing 96 n n 
CAB HAB1 EDN sing 97 n n 
CAB HAB2 EDN sing 98 n n 
CAC HAC1 EDN sing 99 n n 
CAC HAC2 EDN sing 100 n n 
NAD HAD1 EDN sing 101 n n 
NAD HAD2 EDN sing 102 n n 
#
_atom_sites.entry_id                     4XYY 
_atom_sites.fract_transf_matrix[1][1]    0.012948 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012948 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026343 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZKG A 1 201 1 ZKG ZKG . 
C 3 DMS A 1 202 1 DMS DMS . 
D 4 EDN A 1 203 1 EDN EDN . 
E 4 EDN A 1 204 2 EDN EDN . 
F 5 HOH A 1 301 153 HOH HOH . 
F 5 HOH A 2 302 92 HOH HOH . 
F 5 HOH A 3 303 81 HOH HOH . 
F 5 HOH A 4 304 123 HOH HOH . 
F 5 HOH A 5 305 66 HOH HOH . 
F 5 HOH A 6 306 61 HOH HOH . 
F 5 HOH A 7 307 132 HOH HOH . 
F 5 HOH A 8 308 151 HOH HOH . 
F 5 HOH A 9 309 100 HOH HOH . 
F 5 HOH A 10 310 140 HOH HOH . 
F 5 HOH A 11 311 91 HOH HOH . 
F 5 HOH A 12 312 68 HOH HOH . 
F 5 HOH A 13 313 43 HOH HOH . 
F 5 HOH A 14 314 45 HOH HOH . 
F 5 HOH A 15 315 13 HOH HOH . 
F 5 HOH A 16 316 27 HOH HOH . 
F 5 HOH A 17 317 88 HOH HOH . 
F 5 HOH A 18 318 34 HOH HOH . 
F 5 HOH A 19 319 134 HOH HOH . 
F 5 HOH A 20 320 152 HOH HOH . 
F 5 HOH A 21 321 102 HOH HOH . 
F 5 HOH A 22 322 57 HOH HOH . 
F 5 HOH A 23 323 73 HOH HOH . 
F 5 HOH A 24 324 113 HOH HOH . 
F 5 HOH A 25 325 53 HOH HOH . 
F 5 HOH A 26 326 124 HOH HOH . 
F 5 HOH A 27 327 64 HOH HOH . 
F 5 HOH A 28 328 120 HOH HOH . 
F 5 HOH A 29 329 119 HOH HOH . 
F 5 HOH A 30 330 20 HOH HOH . 
F 5 HOH A 31 331 95 HOH HOH . 
F 5 HOH A 32 332 49 HOH HOH . 
F 5 HOH A 33 333 9 HOH HOH . 
F 5 HOH A 34 334 162 HOH HOH . 
F 5 HOH A 35 335 14 HOH HOH . 
F 5 HOH A 36 336 58 HOH HOH . 
F 5 HOH A 37 337 83 HOH HOH . 
F 5 HOH A 38 338 5 HOH HOH . 
F 5 HOH A 39 339 65 HOH HOH . 
F 5 HOH A 40 340 106 HOH HOH . 
F 5 HOH A 41 341 26 HOH HOH . 
F 5 HOH A 42 342 48 HOH HOH . 
F 5 HOH A 43 343 90 HOH HOH . 
F 5 HOH A 44 344 2 HOH HOH . 
F 5 HOH A 45 345 39 HOH HOH . 
F 5 HOH A 46 346 141 HOH HOH . 
F 5 HOH A 47 347 15 HOH HOH . 
F 5 HOH A 48 348 59 HOH HOH . 
F 5 HOH A 49 349 98 HOH HOH . 
F 5 HOH A 50 350 128 HOH HOH . 
F 5 HOH A 51 351 19 HOH HOH . 
F 5 HOH A 52 352 44 HOH HOH . 
F 5 HOH A 53 353 11 HOH HOH . 
F 5 HOH A 54 354 31 HOH HOH . 
F 5 HOH A 55 355 37 HOH HOH . 
F 5 HOH A 56 356 36 HOH HOH . 
F 5 HOH A 57 357 104 HOH HOH . 
F 5 HOH A 58 358 130 HOH HOH . 
F 5 HOH A 59 359 50 HOH HOH . 
F 5 HOH A 60 360 33 HOH HOH . 
F 5 HOH A 61 361 1 HOH HOH . 
F 5 HOH A 62 362 149 HOH HOH . 
F 5 HOH A 63 363 4 HOH HOH . 
F 5 HOH A 64 364 136 HOH HOH . 
F 5 HOH A 65 365 56 HOH HOH . 
F 5 HOH A 66 366 142 HOH HOH . 
F 5 HOH A 67 367 18 HOH HOH . 
F 5 HOH A 68 368 16 HOH HOH . 
F 5 HOH A 69 369 89 HOH HOH . 
F 5 HOH A 70 370 111 HOH HOH . 
F 5 HOH A 71 371 29 HOH HOH . 
F 5 HOH A 72 372 62 HOH HOH . 
F 5 HOH A 73 373 147 HOH HOH . 
F 5 HOH A 74 374 139 HOH HOH . 
F 5 HOH A 75 375 35 HOH HOH . 
F 5 HOH A 76 376 52 HOH HOH . 
F 5 HOH A 77 377 17 HOH HOH . 
F 5 HOH A 78 378 42 HOH HOH . 
F 5 HOH A 79 379 131 HOH HOH . 
F 5 HOH A 80 380 3 HOH HOH . 
F 5 HOH A 81 381 77 HOH HOH . 
F 5 HOH A 82 382 41 HOH HOH . 
F 5 HOH A 83 383 32 HOH HOH . 
F 5 HOH A 84 384 47 HOH HOH . 
F 5 HOH A 85 385 12 HOH HOH . 
F 5 HOH A 86 386 8 HOH HOH . 
F 5 HOH A 87 387 21 HOH HOH . 
F 5 HOH A 88 388 10 HOH HOH . 
F 5 HOH A 89 389 63 HOH HOH . 
F 5 HOH A 90 390 25 HOH HOH . 
F 5 HOH A 91 391 46 HOH HOH . 
F 5 HOH A 92 392 135 HOH HOH . 
F 5 HOH A 93 393 137 HOH HOH . 
F 5 HOH A 94 394 40 HOH HOH . 
F 5 HOH A 95 395 23 HOH HOH . 
F 5 HOH A 96 396 101 HOH HOH . 
F 5 HOH A 97 397 125 HOH HOH . 
F 5 HOH A 98 398 51 HOH HOH . 
F 5 HOH A 99 399 118 HOH HOH . 
F 5 HOH A 100 400 6 HOH HOH . 
F 5 HOH A 101 401 115 HOH HOH . 
F 5 HOH A 102 402 103 HOH HOH . 
F 5 HOH A 103 403 75 HOH HOH . 
F 5 HOH A 104 404 159 HOH HOH . 
F 5 HOH A 105 405 7 HOH HOH . 
F 5 HOH A 106 406 30 HOH HOH . 
F 5 HOH A 107 407 24 HOH HOH . 
F 5 HOH A 108 408 107 HOH HOH . 
F 5 HOH A 109 409 109 HOH HOH . 
F 5 HOH A 110 410 22 HOH HOH . 
F 5 HOH A 111 411 99 HOH HOH . 
F 5 HOH A 112 412 129 HOH HOH . 
F 5 HOH A 113 413 114 HOH HOH . 
F 5 HOH A 114 414 28 HOH HOH . 
F 5 HOH A 115 415 54 HOH HOH . 
F 5 HOH A 116 416 127 HOH HOH . 
F 5 HOH A 117 417 60 HOH HOH . 
F 5 HOH A 118 418 112 HOH HOH . 
F 5 HOH A 119 419 105 HOH HOH . 
F 5 HOH A 120 420 126 HOH HOH . 
F 5 HOH A 121 421 148 HOH HOH . 
F 5 HOH A 122 422 143 HOH HOH . 
F 5 HOH A 123 423 163 HOH HOH . 
F 5 HOH A 124 424 155 HOH HOH . 
F 5 HOH A 125 425 87 HOH HOH . 
F 5 HOH A 126 426 154 HOH HOH . 
F 5 HOH A 127 427 97 HOH HOH . 
F 5 HOH A 128 428 94 HOH HOH . 
F 5 HOH A 129 429 150 HOH HOH . 
F 5 HOH A 130 430 156 HOH HOH . 
F 5 HOH A 131 431 96 HOH HOH . 
F 5 HOH A 132 432 79 HOH HOH . 
F 5 HOH A 133 433 71 HOH HOH . 
F 5 HOH A 134 434 74 HOH HOH . 
F 5 HOH A 135 435 157 HOH HOH . 
F 5 HOH A 136 436 85 HOH HOH . 
F 5 HOH A 137 437 161 HOH HOH . 
F 5 HOH A 138 438 72 HOH HOH . 
F 5 HOH A 139 439 122 HOH HOH . 
F 5 HOH A 140 440 146 HOH HOH . 
F 5 HOH A 141 441 160 HOH HOH . 
F 5 HOH A 142 442 138 HOH HOH . 
F 5 HOH A 143 443 108 HOH HOH . 
F 5 HOH A 144 444 82 HOH HOH . 
F 5 HOH A 145 445 67 HOH HOH . 
F 5 HOH A 146 446 117 HOH HOH . 
F 5 HOH A 147 447 69 HOH HOH . 
F 5 HOH A 148 448 133 HOH HOH . 
F 5 HOH A 149 449 80 HOH HOH . 
F 5 HOH A 150 450 116 HOH HOH . 
F 5 HOH A 151 451 110 HOH HOH . 
F 5 HOH A 152 452 144 HOH HOH . 
F 5 HOH A 153 453 70 HOH HOH . 
F 5 HOH A 154 454 145 HOH HOH . 
F 5 HOH A 155 455 78 HOH HOH . 
F 5 HOH A 156 456 55 HOH HOH . 
F 5 HOH A 157 457 84 HOH HOH . 
F 5 HOH A 158 458 93 HOH HOH . 
F 5 HOH A 159 459 86 HOH HOH . 
F 5 HOH A 160 460 38 HOH HOH . 
F 5 HOH A 161 461 158 HOH HOH . 
F 5 HOH A 162 462 164 HOH HOH . 
F 5 HOH A 163 463 76 HOH HOH . 
F 5 HOH A 164 464 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N NAA EDN . . . D 4 11.905 -30.623 -6.081 1 32.16 ? NAA EDN 203 A 1 
HETATM 2 C CAB EDN . . . D 4 11.21 -29.582 -6.782 1 26.98 ? CAB EDN 203 A 1 
HETATM 3 C CAC EDN . . . D 4 12.198 -28.691 -7.482 1 29.86 ? CAC EDN 203 A 1 
HETATM 4 N NAD EDN . . . D 4 12.33 -27.462 -6.792 1 22.73 ? NAD EDN 203 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#