data_4XZ2 # _model_server_result.job_id eJ3Cd5vrwt3BYelcF2a39Q _model_server_result.datetime_utc '2024-11-21 23:45:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":801}' # _entry.id 4XZ2 # _exptl.entry_id 4XZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.96 _cell.angle_gamma 90 _cell.entry_id 4XZ2 _cell.length_a 76.652 _cell.length_b 164.524 _cell.length_c 133.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 N N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4XZ2 _atom_sites.fract_transf_matrix[1][1] 0.013046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 801 803 PO4 PO4 . F 3 FBP A 1 802 802 FBP FBP . G 4 ADP B 1 801 800 ADP ADP . H 3 FBP B 1 802 802 FBP FBP . I 5 F6P B 1 803 801 F6P F6P . J 2 PO4 B 1 804 803 PO4 PO4 . K 2 PO4 B 1 805 804 PO4 PO4 . L 3 FBP C 1 801 802 FBP FBP . M 2 PO4 C 1 802 803 PO4 PO4 . N 4 ADP D 1 801 800 ADP ADP . O 3 FBP D 1 802 802 FBP FBP . P 5 F6P D 1 803 801 F6P F6P . Q 2 PO4 D 1 804 803 PO4 PO4 . R 2 PO4 D 1 805 804 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . N 4 -17.531 213.183 191.016 1 95.31 ? PB ADP 801 D 1 HETATM 2 O O1B ADP . . . N 4 -16.734 213.633 189.81 1 102.53 ? O1B ADP 801 D 1 HETATM 3 O O2B ADP . . . N 4 -17.01 211.963 191.726 1 92.88 ? O2B ADP 801 D 1 HETATM 4 O O3B ADP . . . N 4 -19.027 213.172 190.866 1 98.94 ? O3B ADP 801 D 1 HETATM 5 P PA ADP . . . N 4 -16.242 214.262 193.269 1 92.47 ? PA ADP 801 D 1 HETATM 6 O O1A ADP . . . N 4 -16.317 215.593 193.977 1 92.43 ? O1A ADP 801 D 1 HETATM 7 O O2A ADP . . . N 4 -16.443 212.969 194.025 1 92.5 ? O2A ADP 801 D 1 HETATM 8 O O3A ADP . . . N 4 -17.281 214.396 192.045 1 96.58 ? O3A ADP 801 D 1 HETATM 9 O O5' ADP . . . N 4 -14.812 214.081 192.573 1 85.99 ? O5' ADP 801 D 1 HETATM 10 C C5' ADP . . . N 4 -13.67 214.106 193.428 1 87.21 ? C5' ADP 801 D 1 HETATM 11 C C4' ADP . . . N 4 -12.468 214.593 192.634 1 90.07 ? C4' ADP 801 D 1 HETATM 12 O O4' ADP . . . N 4 -12.82 215.682 191.773 1 90.55 ? O4' ADP 801 D 1 HETATM 13 C C3' ADP . . . N 4 -11.35 215.069 193.551 1 91.26 ? C3' ADP 801 D 1 HETATM 14 O O3' ADP . . . N 4 -10.203 214.273 193.345 1 93.55 ? O3' ADP 801 D 1 HETATM 15 C C2' ADP . . . N 4 -11.022 216.485 193.144 1 91.44 ? C2' ADP 801 D 1 HETATM 16 O O2' ADP . . . N 4 -9.683 216.579 192.646 1 87.98 ? O2' ADP 801 D 1 HETATM 17 C C1' ADP . . . N 4 -12.011 216.833 192.038 1 89.67 ? C1' ADP 801 D 1 HETATM 18 N N9 ADP . . . N 4 -12.858 217.965 192.485 1 88.93 ? N9 ADP 801 D 1 HETATM 19 C C8 ADP . . . N 4 -14.144 217.863 192.882 1 87.16 ? C8 ADP 801 D 1 HETATM 20 N N7 ADP . . . N 4 -14.634 219.083 193.231 1 90.08 ? N7 ADP 801 D 1 HETATM 21 C C5 ADP . . . N 4 -13.639 219.977 193.074 1 86.42 ? C5 ADP 801 D 1 HETATM 22 C C6 ADP . . . N 4 -13.498 221.426 193.271 1 84.7 ? C6 ADP 801 D 1 HETATM 23 N N6 ADP . . . N 4 -14.566 222.113 193.717 1 85.58 ? N6 ADP 801 D 1 HETATM 24 N N1 ADP . . . N 4 -12.301 222.004 193 1 84.39 ? N1 ADP 801 D 1 HETATM 25 C C2 ADP . . . N 4 -11.252 221.272 192.552 1 86.3 ? C2 ADP 801 D 1 HETATM 26 N N3 ADP . . . N 4 -11.317 219.933 192.342 1 84.4 ? N3 ADP 801 D 1 HETATM 27 C C4 ADP . . . N 4 -12.465 219.243 192.58 1 86.22 ? C4 ADP 801 D 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #