data_4XZ2 # _model_server_result.job_id oSXt-BAc5WDpcsymS0OhYA _model_server_result.datetime_utc '2024-11-14 17:06:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":802}' # _entry.id 4XZ2 # _exptl.entry_id 4XZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.96 _cell.angle_gamma 90 _cell.entry_id 4XZ2 _cell.length_a 76.652 _cell.length_b 164.524 _cell.length_c 133.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 L N N ? 3 O N N # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FBP _chem_comp.mon_nstd_flag n _chem_comp.name 1,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-FRUCTOSE-1,6-DIPHOSPHATE;FRUCTOSE-1,6-BISPHOSPHATE;1,6-di-O-phosphono-beta-D-fructose;1,6-di-O-phosphono-D-fructose;1,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FBP doub 156 n n P1 O2P FBP sing 157 n n P1 O3P FBP sing 158 n n P1 O1 FBP sing 159 n n O2P HOP2 FBP sing 160 n n O3P HOP3 FBP sing 161 n n O1 C1 FBP sing 162 n n C1 C2 FBP sing 163 n n C1 H11 FBP sing 164 n n C1 H12 FBP sing 165 n n C2 O2 FBP sing 166 n n C2 C3 FBP sing 167 n n C2 O5 FBP sing 168 n n O2 HO2 FBP sing 169 n n C3 O3 FBP sing 170 n n C3 C4 FBP sing 171 n n C3 H3 FBP sing 172 n n O3 HO3 FBP sing 173 n n C4 O4 FBP sing 174 n n C4 C5 FBP sing 175 n n C4 H4 FBP sing 176 n n O4 HO4 FBP sing 177 n n C5 O5 FBP sing 178 n n C5 C6 FBP sing 179 n n C5 H5 FBP sing 180 n n C6 O6 FBP sing 181 n n C6 H61 FBP sing 182 n n C6 H62 FBP sing 183 n n O6 P2 FBP sing 184 n n P2 O4P FBP doub 185 n n P2 O5P FBP sing 186 n n P2 O6P FBP sing 187 n n O5P HOP5 FBP sing 188 n n O6P HOP6 FBP sing 189 n n # _pdbx_chem_comp_identifier.comp_id FBP _pdbx_chem_comp_identifier.identifier b-D-Fruf1PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4XZ2 _atom_sites.fract_transf_matrix[1][1] 0.013046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 801 803 PO4 PO4 . F 3 FBP A 1 802 802 FBP FBP . G 4 ADP B 1 801 800 ADP ADP . H 3 FBP B 1 802 802 FBP FBP . I 5 F6P B 1 803 801 F6P F6P . J 2 PO4 B 1 804 803 PO4 PO4 . K 2 PO4 B 1 805 804 PO4 PO4 . L 3 FBP C 1 801 802 FBP FBP . M 2 PO4 C 1 802 803 PO4 PO4 . N 4 ADP D 1 801 800 ADP ADP . O 3 FBP D 1 802 802 FBP FBP . P 5 F6P D 1 803 801 F6P F6P . Q 2 PO4 D 1 804 803 PO4 PO4 . R 2 PO4 D 1 805 804 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FBP . . . F 3 -19.424 160.667 140.994 1 44.67 ? P1 FBP 802 A 1 HETATM 2 O O1P FBP . . . F 3 -20.277 159.978 139.948 1 43.18 ? O1P FBP 802 A 1 HETATM 3 O O2P FBP . . . F 3 -18.99 159.636 141.994 1 44.93 ? O2P FBP 802 A 1 HETATM 4 O O3P FBP . . . F 3 -20.175 161.74 141.707 1 44.59 ? O3P FBP 802 A 1 HETATM 5 O O1 FBP . . . F 3 -18.149 161.394 140.317 1 43.5 ? O1 FBP 802 A 1 HETATM 6 C C1 FBP . . . F 3 -18.246 162.548 139.482 1 44.01 ? C1 FBP 802 A 1 HETATM 7 C C2 FBP . . . F 3 -16.95 162.813 138.67 1 43.53 ? C2 FBP 802 A 1 HETATM 8 O O2 FBP . . . F 3 -16.123 163.857 139.295 1 39.81 ? O2 FBP 802 A 1 HETATM 9 C C3 FBP . . . F 3 -17.051 163.428 137.294 1 46.14 ? C3 FBP 802 A 1 HETATM 10 O O3 FBP . . . F 3 -16.066 164.45 137.186 1 43.98 ? O3 FBP 802 A 1 HETATM 11 C C4 FBP . . . F 3 -16.795 162.38 136.224 1 43.88 ? C4 FBP 802 A 1 HETATM 12 O O4 FBP . . . F 3 -17.932 161.967 135.511 1 43.78 ? O4 FBP 802 A 1 HETATM 13 C C5 FBP . . . F 3 -16.337 161.209 137.017 1 41.56 ? C5 FBP 802 A 1 HETATM 14 O O5 FBP . . . F 3 -16.383 161.546 138.393 1 42.65 ? O5 FBP 802 A 1 HETATM 15 C C6 FBP . . . F 3 -14.923 160.898 136.625 1 41.9 ? C6 FBP 802 A 1 HETATM 16 O O6 FBP . . . F 3 -14.299 160.47 137.788 1 40.33 ? O6 FBP 802 A 1 HETATM 17 P P2 FBP . . . F 3 -12.796 160.794 137.957 1 36.29 ? P2 FBP 802 A 1 HETATM 18 O O4P FBP . . . F 3 -12.125 159.948 136.926 1 40.25 ? O4P FBP 802 A 1 HETATM 19 O O5P FBP . . . F 3 -12.449 160.388 139.371 1 36.95 ? O5P FBP 802 A 1 HETATM 20 O O6P FBP . . . F 3 -12.527 162.263 137.698 1 37.73 ? O6P FBP 802 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #